![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 months ago
Closed 9 months ago
#16771 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.6.1-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff857bebdc0 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, psutil._psutil_osx, psutil._psutil_posix, chimerax.atom_search.ast, chimerax.chem_group._chem_group, PIL._imagingmath (total: 63)
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{
"uptime" : 24000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 1819576877,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,2",
"coalitionID" : 2473,
"osVersion" : {
"train" : "macOS 14.6.1",
"build" : "23G93",
"releaseType" : "User"
},
"captureTime" : "2025-02-03 16:01:07.5088 +0000",
"codeSigningMonitor" : 0,
"incident" : "B9324EA7-92C7-4A2C-8A30-404FD5C030D5",
"pid" : 24471,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-02-03 15:12:40.7469 +0000",
"procStartAbsTime" : 21321047714491,
"procExitAbsTime" : 24227788301815,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"8836D6A7-3E5D-5229-B0B5-E061EA40C7CE","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "3EE4C452-DC64-6367-4FDC-85C8665D4F90",
"lowPowerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"bridgeVersion" : {"build":"21P6074","train":"8.6"},
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4485832704\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10b606000-10b60a000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x000000000000000d, 0x0000000000000000","rawCodes":[13,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"UNKNOWN_0xD at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":24471},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4485832704\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10b606000-10b60a000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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"arch" : "x86_64h",
"base" : 140703471538176,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4829181,
"uuid" : "c5e5acb6-9e44-3aa3-bd21-0a5b4a2eee5e",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "2602"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703650234368,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 2732020,
"uuid" : "2aa738bf-9f72-3227-8bba-7eae7b9f080b",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703467397120,
"size" : 591904,
"uuid" : "18f658dd-20f3-324d-b7ac-8a9c60b574b3",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703470280704,
"size" : 503796,
"uuid" : "69eca28c-bfb7-35bf-ad4f-1bece712d239",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
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"arch" : "x86_64",
"base" : 140703468007424,
"size" : 294910,
"uuid" : "de6f07c9-7000-3dd2-a6e4-27a108381bcb",
"path" : "\/usr\/lib\/system\/libxpc.dylib",
"name" : "libxpc.dylib"
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"arch" : "x86_64",
"base" : 140712539488256,
"size" : 20480,
"uuid" : "61eff708-35c6-31f4-980c-698ef1a16e5d",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Libraries\/libCoreVMClient.dylib",
"name" : "libCoreVMClient.dylib"
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{
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"arch" : "x86_64",
"base" : 140712539574272,
"size" : 12288,
"uuid" : "913d5f5d-a62f-39fc-884f-daf2dea11fd9",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Libraries\/libCVMSPluginSupport.dylib",
"name" : "libCVMSPluginSupport.dylib"
}
],
"sharedCache" : {
"base" : 140703466700800,
"size" : 25769803776,
"uuid" : "b8509d0f-c366-3716-9a03-efa00b40318a"
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)\nWritable regions: Total=866.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=866.4M(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG backing stores 3152K 1 \nCG image 148K 31 \nColorSync 252K 31 \nCoreAnimation 636K 111 \nCoreGraphics 24K 4 \nCoreUI image data 2648K 35 \nDispatch continuations 64.0M 1 \nFoundation 56K 3 \nIOKit 15.5M 2 \nKernel Alloc Once 8K 1 \nMALLOC 400.6M 598 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 132K 33 \nStack 159.8M 34 \nStack Guard 56.0M 1 \nVM_ALLOCATE 234.6M 237 \n__CTF 824 1 \n__DATA 45.1M 795 \n__DATA_CONST 53.2M 460 \n__DATA_DIRTY 1842K 230 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 212.2M 159 \n__OBJC_RO 71.9M 1 \n__OBJC_RW 2201K 2 \n__TEXT 1.0G 804 \ndyld private memory 32K 1 \nmapped file 532.3M 87 \nshared memory 3644K 32 \n=========== ======= ======= \nTOTAL 2.8G 3715 \nTOTAL, minus reserved VM space 2.8G 3715 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
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},
"logWritingSignature" : "e33c0d776e33c966292a854423227e70d93b2cae",
"trialInfo" : {
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/Ub
> Loaded with densitity 1.cxs" format session
Opened J358_emready_map.mrc as #2, grid size 296,296,296, pixel 0.95, shown at
level 4.89, step 2, values float32
opened ChimeraX session
> hide #!2 models
> select /A:854
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /A:854
14 atoms, 13 bonds, 1 residue, 1 model selected
> show sel atoms
> view /A:854
> delete H
> color sel byhetero
> ui tool show H-Bonds
> hbonds sel radius 0.085 distSlop 0.6 angleSlop 22.0 saltOnly true intraRes
> false reveal true
0 hydrogen bonds found
> ui tool show Distances
> ui tool show Contacts
> contacts sel ignoreHiddenModels true
11 contacts
> select /C:74
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:73-74
19 atoms, 18 bonds, 2 residues, 1 model selected
> color sel byhetero
> color sel byelement
> ui tool show "Side View"
> save /Users/huberj/Desktop/image3.png supersample 3
> contacts delete
> select clear
> save /Users/huberj/Desktop/T854.png width 1344 height 918 supersample 3
> transparentBackground true
> close session
> open "/Users/huberj/Desktop/Presentations/Final Ub loaded.cxs" format
> session
Opened postprocess_J271_emready.mrc as #1, grid size 296,296,296, pixel 0.95,
shown at level 5, step 1, values float32
opened ChimeraX session
> select /A:819
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:819
9 atoms, 8 bonds, 1 residue, 1 model selected
> view /A:819
> show sel atoms
> ui tool show Contacts
> contacts sel ignoreHiddenModels true
3 contacts
> ui tool show H-Bonds
> hbonds sel radius 0.085 distSlop 0.6 angleSlop 22.0 saltOnly true intraRes
> false reveal true
0 hydrogen bonds found
> view clip false
> select /C:76
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /C
602 atoms, 608 bonds, 76 residues, 1 model selected
> show sel atoms
> ui tool show Contacts
> contacts sel ignoreHiddenModels true
323 contacts
> ui tool show H-Bonds
> hbonds sel radius 0.085 distSlop 0.6 angleSlop 22.0 saltOnly true intraRes
> false reveal true
9 hydrogen bonds found
> close session
> open "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/Ub
> Loaded with densitity 1.cxs" format session
Opened J358_emready_map.mrc as #2, grid size 296,296,296, pixel 0.95, shown at
level 4.89, step 2, values float32
opened ChimeraX session
> hide #!2 models
> select /C:75
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /C
1223 atoms, 1229 bonds, 75 residues, 1 model selected
> show sel atoms
> ui tool show Contacts
> contacts sel ignoreHiddenModels true
551 contacts
> select /A:859
14 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:706-859
2451 atoms, 2479 bonds, 154 residues, 1 model selected
> show sel atoms
> select /A:705
22 atoms, 21 bonds, 1 residue, 1 model selected
> select /A:705-859
2473 atoms, 2501 bonds, 155 residues, 1 model selected
> hide sel atoms
> select /A:716-767
821 atoms, 827 bonds, 52 residues, 1 model selected
> select /A:452-767
4982 atoms, 5041 bonds, 316 residues, 1 model selected
> show sel atoms
> delete H
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /C
597 atoms, 603 bonds, 176 pseudobonds, 75 residues, 2 models selected
> hide sel atoms
> select /C:68-69
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /C:68-69
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /C:68-69
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /C:68-69
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:68-69
18 atoms, 18 bonds, 2 residues, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A:859
14 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:400-859
3699 atoms, 3791 bonds, 460 residues, 1 model selected
> hide sel atoms
> select /A:479
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:479
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> view /A:479
> ui tool show "Side View"
> save /Users/huberj/Desktop/image4.png supersample 3
> contacts delete
> select clear
> lighting simple
> save "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/N
> lobe1.png" width 1344 height 918 supersample 3 transparentBackground true
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:479
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:68
10 atoms, 10 bonds, 1 residue, 1 model selected
> color sel byhetero
> select /A:479
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:479
11 atoms, 10 bonds, 1 residue, 1 model selected
> color sel byhetero
> select clear
> save "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/N
> lobe1.png" width 1344 height 918 supersample 3
> select /A:546
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:546
8 atoms, 7 bonds, 1 residue, 1 model selected
> view /A:546
> show sel atoms
> color sel byhetero
> view clip false
> select /C:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /C
597 atoms, 603 bonds, 75 residues, 1 model selected
> hide sel atoms
> select /A:547
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:547-859
2478 atoms, 2535 bonds, 313 residues, 1 model selected
> hide sel atoms
> select /A:540
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:262-540
2271 atoms, 2320 bonds, 279 residues, 1 model selected
> hide sel atoms
> select ::name="AYE"
4 atoms, 3 bonds, 1 residue, 1 model selected
> show sel atoms
> select /C:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> select /C:75
4 atoms, 3 bonds, 1 residue, 1 model selected
> show sel atoms
> select /A:823
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:823
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> select /C:74
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:74
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero
> ui mousemode right select
> view /A:546
> select
> /A:13-32,38-41,123-130,178-186,201-208,216-229,258-263,300-302,382-384,387-392,394-396,401-426,436-440,443-448,452-463,478-486,498-505,543-555,573-577,595-610,621-628,637-640,643-653,657-663,686-688,694-708,712-725,728-733,736-744,751-757,768-779,782-793,835-848
2495 atoms, 2509 bonds, 306 residues, 1 model selected
> select /A:790
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:790
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> view clip false
> ui tool show "Side View"
> view /A:790
> hide sel atoms
> contacts delete
> select clear
> lighting simple
> save /Users/huberj/Desktop/image5.png supersample 3
> save /Users/huberj/Desktop/image6.png supersample 3
> save "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/D546
> 1.png" width 1344 height 918 supersample 3 transparentBackground true
> save "/Users/huberj/Desktop/HECTD3 paper/New figures layout/Figure4/D546
> 2.png" width 1344 height 918 supersample 3
> select /C:74
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /C:74
11 atoms, 10 bonds, 1 residue, 1 model selected
> hide sel atoms
> select /A:546@CG
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:546@OD2
1 atom, 1 residue, 1 model selected
> select /A:546@OD2
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:546@OD1
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:546@CB
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select /A:822
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:822-823
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:821
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:821-824
25 atoms, 24 bonds, 4 residues, 1 model selected
> show sel atoms
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-22.5.11
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0)
OS Loader Version: 580.140.1~8
Software:
System Software Overview:
System Version: macOS 14.6.1 (23G93)
Kernel Version: Darwin 23.6.0
Time since boot: 11 hours, 12 minutes
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG UltraFine:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 9 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 9 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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