![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#16926 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000001f4d70840 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 54)
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{
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"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,6",
"coalitionID" : 1758,
"osVersion" : {
"train" : "macOS 15.3",
"build" : "24D60",
"releaseType" : "User"
},
"captureTime" : "2025-02-19 16:20:34.7667 +0900",
"codeSigningMonitor" : 1,
"incident" : "3C59485A-FD6F-429A-9BBC-51F3D06D93C4",
"pid" : 23327,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-02-19 13:29:05.6231 +0900",
"procStartAbsTime" : 3860999079077,
"procExitAbsTime" : 4105927192598,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"0D9DF10A-200C-5378-80BD-FAFC22B09513","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "7BBC0ECE-6E8A-EF23-8FB1-C7951B8AEE77",
"lowPowerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "DA265300-EB9E-4B3D-BD22-3FFF6F940A93",
"wakeTime" : 1997,
"sleepWakeUUID" : "FBA8343D-5042-4485-9551-FF98834DE480",
"sip" : "enabled",
"vmRegionInfo" : "0x73f4a1a53c88 is not in any region. Bytes after previous region: 21940822310025 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n owned unmapped memory unmapped-unmapped [ 43.6M] rw-\/rw- SM=PRV owned physical footprint (unmapped)\n---> \n UNUSED SPACE AT END",
"exception" : {"codes":"0x0000000000000001, 0x000073f4a1a53c88","rawCodes":[1,127494521175176],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x000073f4a1a53c88"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":23327},
"vmregioninfo" : "0x73f4a1a53c88 is not in any region. Bytes after previous region: 21940822310025 \n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n owned unmapped memory unmapped-unmapped [ 43.6M] rw-\/rw- SM=PRV owned physical footprint (unmapped)\n---> \n UNUSED SPACE AT END",
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/acsl4_amp_coa/seed-1_sample-1/model.cif
Chain information for model.cif #1
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> select ::name="AMP"::name="COA"
71 atoms, 75 bonds, 2 residues, 1 model selected
> color sel byelement
> style sel ball
Changed 71 atom styles
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> select ligand
71 atoms, 75 bonds, 2 residues, 1 model selected
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> ui tool show "Side View"
> select #4/A:572
Nothing selected
> select #4/A:572
Nothing selected
> select #4/A:572
Nothing selected
> select #1/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel light steel blue
> color sel byhetero
> color sel light steel blue
> color sel powder blue
> color sel light blue
> color sel light steel blue
> color sel byhetero
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> color sel dark sea green
> color sel byhetero
> color sel light coral
> color sel byhetero
> color sel dark sea green
> color sel byhetero
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> select #1/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> rename #1 acsl4.cif
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/acsl4_3ix/seed-1_sample-0/model.cif
Chain information for model.cif #2
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> ui tool show "Render/Select by Attribute"
> ui tool show Matchmaker
> matchmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 3691.9
RMSD between 549 pruned atom pairs is 0.525 angstroms; (across all 711 pairs:
10.353)
> hide #1 models
> color #2 dim gray
> select ::name="3IX"::name="AMP"::name="COA"
140 atoms, 146 bonds, 3 residues, 2 models selected
> color (#2 & sel) byelement
> style sel & #2 ball
Changed 69 atom styles
> select #1/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> select #2/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> color sel dark sea green
> select add #2
5622 atoms, 5738 bonds, 712 residues, 1 model selected
> select subtract #2
Nothing selected
> style #2 ball
Changed 5622 atom styles
> color #2 byhetero
> close #2
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/fatp2_amp_coa/seed-1_sample-1/model.cif
Chain information for model.cif #2
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> ui tool show Matchmaker
> matchmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
> select #2/A
4958 atoms, 5073 bonds, 620 residues, 1 model selected
> color sel wheat
> color sel byhetero
> select ::name="AMP"::name="COA"
142 atoms, 150 bonds, 4 residues, 2 models selected
> color (#2 & sel) byelement
> style sel & #2 ball
Changed 71 atom styles
> select add #1
5695 atoms, 5817 bonds, 715 residues, 2 models selected
> select subtract #1
71 atoms, 75 bonds, 2 residues, 1 model selected
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> select subtract #2
Nothing selected
> select #2/A
4958 atoms, 5073 bonds, 620 residues, 1 model selected
> color sel tan
> show #1 models
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> select subtract #2
Nothing selected
> hide #1 models
> color #2 byhetero
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #2 models
> show #2 models
> hide #1 models
> hide #2 models
> show #1 models
> select #1/A:690
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #1
5624 atoms, 5742 bonds, 713 residues, 1 model selected
> select subtract #1
Nothing selected
> show #2 models
> hide #1 models
> select #2/A:690
Nothing selected
> select #2/A:572
9 atoms, 8 bonds, 1 residue, 1 model selected
> ui tool show Matchmaker
> matchmaker #2 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
> show #1 models
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> select subtract #2
Nothing selected
> hide #1 models
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/fatp2_amp_coa/seed-1_sample-2/model.cif
Chain information for model.cif #3
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> ui tool show Matchmaker
> matchmaker #2-3 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#3), sequence
alignment score = 553.4
RMSD between 248 pruned atom pairs is 1.213 angstroms; (across all 564 pairs:
12.918)
> close #3
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/fatp2_amp_coa/seed-1_sample-1/model.cif
Chain information for model.cif #3
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> ui tool show Matchmaker
> matchmaker #2-3 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#3), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
> show #1 models
> hide #1 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> close #3
> open /Users/mk16/works/acyl-
> CoA_synthetase/AF3_local/output/fatp2_3ix/seed-1_sample-1/model.cif
Chain information for model.cif #3
---
Chain | Description
A | .
No chain in structure corresponds to chain ID given in local score info (chain
'B')
Computing secondary structure
> ui tool show Matchmaker
> matchmaker #2-3 to #1
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#2), sequence
alignment score = 551
RMSD between 243 pruned atom pairs is 1.200 angstroms; (across all 564 pairs:
13.035)
Matchmaker acsl4.cif, chain A (#1) with model.cif, chain A (#3), sequence
alignment score = 531.8
RMSD between 248 pruned atom pairs is 1.237 angstroms; (across all 564 pairs:
13.076)
> hide #3 models
> show #3 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> close #3
> select #2/A:293,295,291,88,318,265,312
54 atoms, 49 bonds, 7 residues, 1 model selected
> select #2/A:293,295,291,88,318,265,312,488
63 atoms, 57 bonds, 8 residues, 1 model selected
> select #2/A:
Expected an objects specifier or a keyword
> select #2/A
4958 atoms, 5073 bonds, 620 residues, 1 model selected
> select #2/A:293,295,291,88,318,265,312,488,268
73 atoms, 67 bonds, 9 residues, 1 model selected
> color sel dark sea green
> color sel byhetero
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> select subtract #2
Nothing selected
> show #1 models
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> select #1/A:293,295,291,88,318,265,312,488,268
71 atoms, 64 bonds, 9 residues, 1 model selected
> select #1/A:196-201
46 atoms, 46 bonds, 6 residues, 1 model selected
> select #1/A:190-196
52 atoms, 52 bonds, 7 residues, 1 model selected
> select #1/A:185-196
86 atoms, 86 bonds, 12 residues, 1 model selected
> select #1/A:180-196
126 atoms, 127 bonds, 17 residues, 1 model selected
> hide sel cartoons
> select #2/A:150-179
220 atoms, 221 bonds, 30 residues, 1 model selected
> select #2/A:140-150
84 atoms, 85 bonds, 11 residues, 1 model selected
> select #2/A:135-150
131 atoms, 133 bonds, 16 residues, 1 model selected
> hide sel cartoons
> select #1/A:190-224
268 atoms, 270 bonds, 35 residues, 1 model selected
> hide sel cartoons
> select #2/A:151-179
214 atoms, 215 bonds, 29 residues, 1 model selected
> hide sel cartoons
> select #2/A:293,295,291,88,318,265,312,488,268
73 atoms, 67 bonds, 9 residues, 1 model selected
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> hide #1 models
> select #2/A:293,295,291,88,318,265,312,488,268
73 atoms, 67 bonds, 9 residues, 1 model selected
> show #1 models
> hide #2 models
> select #2/A:293,295,291,88,318,265,312,488,268
73 atoms, 67 bonds, 9 residues, 1 model selected
> show #2 models
> hide #1 models
> select add #2
5029 atoms, 5148 bonds, 622 residues, 1 model selected
> select subtract #2
Nothing selected
> select #2/A:293,295,291,88,318,265,312,488,268
73 atoms, 67 bonds, 9 residues, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select add #2
5029 atoms, 5148 bonds, 622 residues, 2 models selected
> select subtract #2
Nothing selected
> show #1 models
> hide #!2 models
> select #1/A:113,664,115,353,380,345,320,377,374,323
87 atoms, 81 bonds, 10 residues, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select add #1
5624 atoms, 5742 bonds, 713 residues, 2 models selected
> select subtract #1
Nothing selected
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,6
Model Number: MRX43J/A
Chip: Apple M3 Pro
Total Number of Cores: 12 (6 performance and 6 efficiency)
Memory: 18 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.1 (24D70)
Kernel Version: Darwin 24.3.0
Time since boot: 23時間 23分
Graphics/Displays:
Apple M3 Pro:
Chipset Model: Apple M3 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 18
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Studio Display:
Display Type: Retina LCD
Resolution: 5120 x 2880 Retina
Display Serial Number: KCR2L4HL0M
Display Firmware Version: Version 17.0 (Build 21A329)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 8 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 8 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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