![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#16816 closed defect (can't reproduce)
Crash during mouse drag
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.2-x86_64-i386-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 4500000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "iMac19,2",
"coalitionID" : 64645,
"osVersion" : {
"train" : "macOS 15.2",
"build" : "24C101",
"releaseType" : "User"
},
"captureTime" : "2025-02-08 18:43:38.0442 -0600",
"codeSigningMonitor" : 0,
"incident" : "990F9976-3CE2-4A59-90C4-359AC892557B",
"pid" : 95809,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-02-08 15:34:38.9124 -0600",
"procStartAbsTime" : 4505401687878143,
"procExitAbsTime" : 4516740617075438,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"99944F6A-37A8-58DB-831B-5301C3E6B1CE","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "55419026-ED34-B735-1CB6-C04017336767",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"bootSessionUUID" : "A72EEBEC-729C-4B53-8C40-30419709A3B3",
"sip" : "enabled",
"vmRegionInfo" : "0x8 is not in any region. Bytes before following region: 4346081272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1030bf000-1030c3000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":95809},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0x8 is not in any region. Bytes before following region: 4346081272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 1030bf000-1030c3000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
"threads" : 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"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
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"arch" : "x86_64",
"base" : 5303336960,
"size" : 32768,
"uuid" : "6174b67e-2ac1-346b-ad21-d6fb32060963",
"path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
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"size" : 245760,
"uuid" : "907f6ba6-6b4b-39d3-ba4b-d1f4244b50bc",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
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"arch" : "x86_64",
"base" : 140703402364928,
"size" : 49152,
"uuid" : "7324bb8c-37ad-3a44-becd-969f31077819",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
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"uuid" : "83c4abe1-cf0a-3460-80c9-123e8ecd53ae",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
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"arch" : "x86_64",
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"size" : 40936,
"uuid" : "ef3470c5-81fd-34e4-9165-a70bf7a6c6e8",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
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{
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"source" : "A",
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"size" : 21983230,
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"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
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"path" : "\/usr\/lib\/libobjc.A.dylib",
"name" : "libobjc.A.dylib"
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Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/Sessions/B1apo_sapA_nano.cxs
Opened relion_locres_filtered342.mrc as #2, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened B1nanoAPO_PP52.mrc as #5, grid size 360,360,360, pixel 0.889, shown at
level 0.005, step 2, values float32
Opened relion_locres_filtered342.mrc 0 as #6.1, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 1 as #6.2, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 2 as #6.3, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened B1nanoAPO_PP52.mrc 0 as #7.1, grid size 360,360,360, pixel 0.889, shown
at level 0.00663, step 1, values float32
Opened B1nanoAPO_PP52.mrc 1 as #7.2, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 2 as #7.3, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Log from Sat Feb 8 19:16:03 2025 Startup Messages
---
warnings | Replacing fetcher for 'ngff' and format OME-Zarr from OME-Zarr bundle with that from OME-Zarr bundle
Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with
that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Volumes/AAlam/B1paper/PDB_MAPS/NEW_workingFILES/ABCB1_PDBs_upload/ABCB1_apo/B1sapoapo_RSRA6_20240722.pdb
Chain information for B1sapoapo_RSRA6_20240722.pdb #1
---
Chain | Description
A | No description available
> open
> /Volumes/AAlam/B1paper/PDB_MAPS/NEW_workingFILES/ABCB1_PDBs_upload/ABCB1_apo/relion_locres_filtered342.mrc
Opened relion_locres_filtered342.mrc as #2, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
> set bgColor white
> ui tool show "Scale Bar"
> scalebar
> scalebar thickness 5
> name tm1 /a:44-88
> name tm2 /a:100-158
> name tm3 /a:167-211
> name tm4 /a:212-260
> name tm5 /a:269-324
> name tm6 /a:325-373
> name tm7 /a:706-742
> name tm8 /a:743-799
> name tm9 /a:810-854
> name tm10 /a:855-902
> name tm11 /a:912-967
> name tm12 /a:968-1014
> name NBD1 /a:374-690
> name NBD2 /a:1015-1280
> name EH1 /a:1-43
> name EH2 /a:690-705
> name CH1 /a:159-166
> name CH2 /a:261-268
> name CH3 /a:800-809
> name CH4 /a:903-911
> name TMD1 /a:27-373
> name TMD2 /a:696-1014
> ui tool show "Basic Actions"
> scalebar 105
> select add #3
2 models selected
> scalebar ypos 0.2
> scalebar ypos 0.5
> scalebar xpos 0.5
> scalebar xpos 0.3
> open
> /Volumes/AAlam/B1paper/B1nanoAPOmapsPDB/ABCB1nano_apo_RSR42_real_space_refined_232-coot-0.pdb
Chain information for ABCB1nano_apo_RSR42_real_space_refined_232-coot-0.pdb #4
---
Chain | Description
A | No description available
> open /Volumes/AAlam/B1paper/B1nanoAPOmapsPDB/B1nanoAPO_PP52.mrc
Opened B1nanoAPO_PP52.mrc as #5, grid size 360,360,360, pixel 0.889, shown at
level 0.005, step 2, values float32
> surface dust #2 size 9.96
> surface dust #5 size 8.89
> select subtract #3
Nothing selected
> select add #4
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 2 models selected
> select add #5
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 4 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #4,1,0,0,29.109,0,1,0,-83.702,0,0,1,-104.61,#5,1,0,0,29.109,0,1,0,-83.702,0,0,1,-104.61
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.22273,0.71114,-0.66683,206.65,-0.75499,0.30691,0.57948,48.777,0.61675,0.63252,0.46855,-214.17,#5,-0.22273,0.71114,-0.66683,206.65,-0.75499,0.30691,0.57948,48.777,0.61675,0.63252,0.46855,-214.17
> view matrix models
> #4,0.30215,-0.65867,-0.68909,353.83,-0.92182,-0.017781,-0.3872,284.06,0.24279,0.75222,-0.61255,-1.2865,#5,0.30215,-0.65867,-0.68909,353.83,-0.92182,-0.017781,-0.3872,284.06,0.24279,0.75222,-0.61255,-1.2865
> view matrix models
> #4,0.16979,-0.71676,-0.67633,381.22,-0.92884,0.11293,-0.35286,258.26,0.3293,0.68812,-0.64658,1.6035,#5,0.16979,-0.71676,-0.67633,381.22,-0.92884,0.11293,-0.35286,258.26,0.3293,0.68812,-0.64658,1.6035
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.16979,-0.71676,-0.67633,375.03,-0.92884,0.11293,-0.35286,252.93,0.3293,0.68812,-0.64658,-2.2125,#5,0.16979,-0.71676,-0.67633,375.03,-0.92884,0.11293,-0.35286,252.93,0.3293,0.68812,-0.64658,-2.2125
> view matrix models
> #4,0.16979,-0.71676,-0.67633,374.47,-0.92884,0.11293,-0.35286,255.77,0.3293,0.68812,-0.64658,0.91606,#5,0.16979,-0.71676,-0.67633,374.47,-0.92884,0.11293,-0.35286,255.77,0.3293,0.68812,-0.64658,0.91606
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.12748,-0.74471,-0.6551,381.96,-0.89961,0.19132,-0.39255,245.05,0.41767,0.63938,-0.64556,-4.6754,#5,0.12748,-0.74471,-0.6551,381.96,-0.89961,0.19132,-0.39255,245.05,0.41767,0.63938,-0.64556,-4.6754
> view matrix models
> #4,0.27524,0.70061,0.65832,-89.177,-0.4467,-0.51316,0.73288,108.18,0.85129,-0.49579,0.17172,-18.436,#5,0.27524,0.70061,0.65832,-89.177,-0.4467,-0.51316,0.73288,108.18,0.85129,-0.49579,0.17172,-18.436
> view matrix models
> #4,-0.19213,0.41735,0.88821,-9.8427,-0.37772,-0.86679,0.32558,221.54,0.90577,-0.27294,0.32418,-87.726,#5,-0.19213,0.41735,0.88821,-9.8427,-0.37772,-0.86679,0.32558,221.54,0.90577,-0.27294,0.32418,-87.726
> view matrix models
> #4,0.15291,0.54111,0.82693,-72.162,-0.40658,-0.72823,0.55171,166.58,0.90073,-0.42058,0.10865,-27.887,#5,0.15291,0.54111,0.82693,-72.162,-0.40658,-0.72823,0.55171,166.58,0.90073,-0.42058,0.10865,-27.887
> view matrix models
> #4,0.35537,-0.72254,-0.593,333.81,-0.85683,0.0017406,-0.5156,289.45,0.37357,0.69133,-0.61847,-10.869,#5,0.35537,-0.72254,-0.593,333.81,-0.85683,0.0017406,-0.5156,289.45,0.37357,0.69133,-0.61847,-10.869
> view matrix models
> #4,0.02136,-0.82837,-0.55977,396.11,-0.83364,0.29432,-0.46736,230.49,0.5519,0.47663,-0.68428,7.8179,#5,0.02136,-0.82837,-0.55977,396.11,-0.83364,0.29432,-0.46736,230.49,0.5519,0.47663,-0.68428,7.8179
> view matrix models
> #4,0.075925,-0.80451,-0.58907,388.74,-0.8924,0.20872,-0.40008,242.36,0.44482,0.55606,-0.70209,13.975,#5,0.075925,-0.80451,-0.58907,388.74,-0.8924,0.20872,-0.40008,242.36,0.44482,0.55606,-0.70209,13.975
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.075925,-0.80451,-0.58907,388.78,-0.8924,0.20872,-0.40008,241.12,0.44482,0.55606,-0.70209,12.663,#5,0.075925,-0.80451,-0.58907,388.78,-0.8924,0.20872,-0.40008,241.12,0.44482,0.55606,-0.70209,12.663
> view matrix models
> #4,0.075925,-0.80451,-0.58907,390.38,-0.8924,0.20872,-0.40008,235.42,0.44482,0.55606,-0.70209,6.2551,#5,0.075925,-0.80451,-0.58907,390.38,-0.8924,0.20872,-0.40008,235.42,0.44482,0.55606,-0.70209,6.2551
> select subtract #4
2 models selected
> select subtract #5
Nothing selected
> select add #1
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 2 models selected
> select add #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 4 models selected
> view matrix models
> #1,1,0,0,-7.2891,0,1,0,5.5311,0,0,1,7.7965,#2,1,0,0,-7.2891,0,1,0,5.5311,0,0,1,7.7965
> select clear
> select add #1
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 2 models selected
> select add #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 4 models selected
> select add #3
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 6 models selected
> select add #4
17640 atoms, 17943 bonds, 4 pseudobonds, 2268 residues, 8 models selected
> select add #5
17640 atoms, 17943 bonds, 4 pseudobonds, 2268 residues, 10 models selected
> select clear
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/Sessions/B1apo_sapA_nano.cxs
> ui tool show "Color Zone"
> select TMD1
4952 atoms, 5060 bonds, 2 pseudobonds, 640 residues, 4 models selected
> ui tool show "Color Actions"
> color sel dodger blue
> hide #!5 models
> hide #!2 models
> select TMD1
4952 atoms, 5060 bonds, 2 pseudobonds, 640 residues, 4 models selected
> select TMD2
4945 atoms, 5052 bonds, 638 residues, 2 models selected
> color sel yellow
> select NBD2
3669 atoms, 3721 bonds, 478 residues, 2 models selected
> color sel yellow
> select NBD1
3797 atoms, 3842 bonds, 490 residues, 2 models selected
> color sel dodger blue
> select TMD1
4952 atoms, 5060 bonds, 2 pseudobonds, 640 residues, 4 models selected
> color sel dodger blue
> select clear
> show #!2 models
> show #!5 models
> color zone #2 near #1 distance 2.5
> volume splitbyzone #2
Opened relion_locres_filtered342.mrc 0 as #6.1, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 1 as #6.2, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 2 as #6.3, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 3 as #6.4, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 4 as #6.5, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 5 as #6.6, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
> color zone #5 near #4 distance 2.5
> volume splitbyzone #5
Opened B1nanoAPO_PP52.mrc 0 as #7.1, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 1 as #7.2, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 2 as #7.3, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 3 as #7.4, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 4 as #7.5, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 5 as #7.6, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
> surface dust #6.1 size 9.96
> surface dust #6.2 size 9.96
> surface dust #6.3 size 9.96
> surface dust #6.4 size 9.96
> surface dust #6.5 size 9.96
> surface dust #6.6 size 9.96
> surface dust #7.1 size 8.89
> surface dust #7.2 size 8.89
> surface dust #7.3 size 8.89
> surface dust #7.4 size 8.89
> surface dust #7.5 size 8.89
> surface dust #7.6 size 8.89
> hide #!6.1 models
> show #!6.1 models
> color #6.1 #d6d6d6ff models
> color #6.4 #d6d6d6ff models
> color #6.5 #d6d6d6ff models
> color #6.3 #d6d6d6ff models
> color #6.6 #d6d6d6ff models
> undo
[Repeated 1 time(s)]
> color yellow
> hide #!1 models
> show #!1 models
> select TMD1
4952 atoms, 5060 bonds, 2 pseudobonds, 640 residues, 4 models selected
> hide #!6 models
> hide #!7 models
> color sel dodger blue
> select NBD1
3797 atoms, 3842 bonds, 490 residues, 2 models selected
> color sel dodger blue
> select NBD2
3669 atoms, 3721 bonds, 478 residues, 2 models selected
> color sel yellow
> select TMD2
4945 atoms, 5052 bonds, 638 residues, 2 models selected
> color sel yellow
[Repeated 1 time(s)]
> select add #1
11117 atoms, 11311 bonds, 2 pseudobonds, 1421 residues, 3 models selected
> select subtract #1
2453 atoms, 2505 bonds, 319 residues, 1 model selected
> select add #4
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 2 models selected
> select subtract #4
Nothing selected
> close #7
> close #6
> show #!2 models
> show #!5 models
> hide #!5 models
> hide #!4 models
> hide #!3 models
> show #!3 models
> color #2 #d6d6d6ff models
> color #5 #d6d6d6ff models
> color zone #2 near #1 distance 2.5
> volume splitbyzone #2
Opened relion_locres_filtered342.mrc 0 as #6.1, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 1 as #6.2, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
Opened relion_locres_filtered342.mrc 2 as #6.3, grid size 256,256,256, pixel
0.996, shown at level 0.00545, step 1, values float32
> hide #!1 models
> hide #!3 models
> hide #!6 models
> show #!4 models
> show #!5 models
> color zone #5 near #4 distance 2.5
> volume splitbyzone #5
Opened B1nanoAPO_PP52.mrc 0 as #7.1, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 1 as #7.2, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
Opened B1nanoAPO_PP52.mrc 2 as #7.3, grid size 360,360,360, pixel 0.889, shown
at level 0.005, step 1, values float32
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!4 models
> show #!1 models
> hide #!1 models
> show #!6 models
> color #6.1 #d6d6d680 models
> color #7.1 #d6d6d680 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> volume #7.1 level 0.007213
> surface dust #6.1 size 9.96
> surface dust #6.2 size 9.96
> surface dust #6.3 size 9.96
> surface dust #7.1 size 8.89
> surface dust #7.2 size 8.89
> surface dust #7.3 size 8.89
> hide #!7 models
> show #!7 models
> show #!3 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!1 models
> select add #1
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 2 models selected
> select add #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 4 models selected
> select add #6
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 11 models selected
> view matrix models
> #1,1,0,0,14.422,0,1,0,9.903,0,0,1,7.4792,#2,1,0,0,14.422,0,1,0,9.903,0,0,1,7.4792,#6,1,0,0,21.711,0,1,0,4.3719,0,0,1,-0.31724
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99883,-0.010493,0.047296,10.174,0.016061,0.99277,-0.11895,23.526,-0.045706,0.11957,0.99177,-2.0737,#2,0.99883,-0.010493,0.047296,10.174,0.016061,0.99277,-0.11895,23.526,-0.045706,0.11957,0.99177,-2.0737,#6,0.99883,-0.010493,0.047296,17.144,0.016061,0.99277,-0.11895,19.079,-0.045706,0.11957,0.99177,-10.801
> view matrix models
> #1,-0.74079,-0.63655,-0.21455,343.64,0.21421,0.078863,-0.9736,228.24,0.63666,-0.76719,0.077932,146.06,#2,-0.74079,-0.63655,-0.21455,343.64,0.21421,0.078863,-0.9736,228.24,0.63666,-0.76719,0.077932,146.06,#6,-0.74079,-0.63655,-0.21455,343.44,0.21421,0.078863,-0.9736,236.95,0.63666,-0.76719,0.077932,154.33
> view matrix models
> #1,-0.64386,-0.76234,-0.065382,330.33,-0.0024247,0.087483,-0.99616,256.76,0.76514,-0.64123,-0.058175,129.73,#2,-0.64386,-0.76234,-0.065382,330.33,-0.0024247,0.087483,-0.99616,256.76,0.76514,-0.64123,-0.058175,129.73,#6,-0.64386,-0.76234,-0.065382,330.37,-0.0024247,0.087483,-0.99616,264.03,0.76514,-0.64123,-0.058175,139.3
> view matrix models
> #1,-0.7878,-0.59381,0.16358,297.15,-0.19155,-0.016199,-0.98135,292.53,0.58539,-0.80444,-0.10098,179.51,#2,-0.7878,-0.59381,0.16358,297.15,-0.19155,-0.016199,-0.98135,292.53,0.58539,-0.80444,-0.10098,179.51,#6,-0.7878,-0.59381,0.16358,293.42,-0.19155,-0.016199,-0.98135,298.88,0.58539,-0.80444,-0.10098,189.01
> view matrix models
> #1,-0.77892,-0.60672,0.15868,298.4,-0.2344,0.046984,-0.971,288,0.58167,-0.79353,-0.17881,188.06,#2,-0.77892,-0.60672,0.15868,298.4,-0.2344,0.046984,-0.971,288,0.58167,-0.79353,-0.17881,188.06,#6,-0.77892,-0.60672,0.15868,294.84,-0.2344,0.046984,-0.971,293.6,0.58167,-0.79353,-0.17881,198.08
> view matrix models
> #1,-0.80523,-0.54025,0.24441,282.09,-0.30299,0.020575,-0.95277,297.87,0.50971,-0.84125,-0.18026,203.67,#2,-0.80523,-0.54025,0.24441,282.09,-0.30299,0.020575,-0.95277,297.87,0.50971,-0.84125,-0.18026,203.67,#6,-0.80523,-0.54025,0.24441,277.3,-0.30299,0.020575,-0.95277,302.97,0.50971,-0.84125,-0.18026,213.44
> view matrix models
> #1,-0.8023,-0.54953,0.2331,284.38,-0.33086,0.08436,-0.9399,291.08,0.49684,-0.8312,-0.2495,212.42,#2,-0.8023,-0.54953,0.2331,284.38,-0.33086,0.08436,-0.9399,291.08,0.49684,-0.8312,-0.2495,212.42,#6,-0.8023,-0.54953,0.2331,279.75,-0.33086,0.08436,-0.9399,295.53,0.49684,-0.8312,-0.2495,222.58
> ui mousemode right "translate selected models"
> view matrix models
> #1,-0.8023,-0.54953,0.2331,287.05,-0.33086,0.08436,-0.9399,292.38,0.49684,-0.8312,-0.2495,213.21,#2,-0.8023,-0.54953,0.2331,287.05,-0.33086,0.08436,-0.9399,292.38,0.49684,-0.8312,-0.2495,213.21,#6,-0.8023,-0.54953,0.2331,282.43,-0.33086,0.08436,-0.9399,296.83,0.49684,-0.8312,-0.2495,223.37
> hide #!2 models
> view matrix models
> #1,-0.8023,-0.54953,0.2331,287.35,-0.33086,0.08436,-0.9399,292.79,0.49684,-0.8312,-0.2495,213.61,#2,-0.8023,-0.54953,0.2331,287.35,-0.33086,0.08436,-0.9399,292.79,0.49684,-0.8312,-0.2495,213.61,#6,-0.8023,-0.54953,0.2331,282.72,-0.33086,0.08436,-0.9399,297.24,0.49684,-0.8312,-0.2495,223.77
> ui mousemode right "rotate selected models"
> view matrix models
> #1,-0.80196,-0.54614,0.24204,285.75,-0.31421,0.041044,-0.94847,297.53,0.50806,-0.83669,-0.20452,207.37,#2,-0.80196,-0.54614,0.24204,285.75,-0.31421,0.041044,-0.94847,297.53,0.50806,-0.83669,-0.20452,207.37,#6,-0.80196,-0.54614,0.24204,281.04,-0.31421,0.041044,-0.94847,302.4,0.50806,-0.83669,-0.20452,217.29
> view matrix models
> #1,-0.80633,-0.52999,0.26255,281.62,-0.33045,0.035518,-0.94315,299.64,0.49054,-0.84726,-0.20378,210.87,#2,-0.80633,-0.52999,0.26255,281.62,-0.33045,0.035518,-0.94315,299.64,0.49054,-0.84726,-0.20378,210.87,#6,-0.80633,-0.52999,0.26255,276.62,-0.33045,0.035518,-0.94315,304.38,0.49054,-0.84726,-0.20378,220.72
> select subtract #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 9 models selected
> select subtract #1
7 models selected
> hide #!1 models
> show #!4 models
> show #!5 models
> select add #4
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 9 models selected
> select add #5
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 11 models selected
> select subtract #6
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 4 models selected
> select add #7
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 11 models selected
> hide #!5 models
> select add #6
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 18 models selected
> view matrix models
> #4,0.096929,-0.79849,-0.59416,386.87,-0.89694,0.18867,-0.39988,240.13,0.4314,0.57168,-0.69791,4.3863,#5,0.096929,-0.79849,-0.59416,386.87,-0.89694,0.18867,-0.39988,240.13,0.4314,0.57168,-0.69791,4.3863,#6,-0.79305,-0.54418,0.27375,275.56,-0.34954,0.038484,-0.93613,304.45,0.49889,-0.83808,-0.22074,221.57,#7,0.99975,-0.015452,0.016262,0.12479,0.015669,0.99979,-0.013311,-1.2659,-0.016053,0.013562,0.99978,1.2066
> select subtract #6
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 11 models selected
> view matrix models
> #4,0.081062,-0.79928,-0.59547,389.64,-0.91197,0.18158,-0.36788,238.35,0.40216,0.57287,-0.7142,11.334,#5,0.081062,-0.79928,-0.59547,389.64,-0.91197,0.18158,-0.36788,238.35,0.40216,0.57287,-0.7142,11.334,#7,0.99995,-0.00093488,0.0096809,-0.56069,0.0013832,0.99892,-0.046405,2.9361,-0.0096271,0.046416,0.99888,-2.0832
> view matrix models
> #4,0.21997,-0.74685,-0.62755,365.09,-0.87172,0.13825,-0.47009,256.02,0.43785,0.65046,-0.62064,-22.137,#5,0.21997,-0.74685,-0.62755,365.09,-0.87172,0.13825,-0.47009,256.02,0.43785,0.65046,-0.62064,-22.137,#7,0.98722,-0.10111,0.12315,2.7268,0.099502,0.99485,0.019165,-17.147,-0.12445,-0.0066666,0.9922,21.811
> view matrix models
> #4,0.21604,-0.77594,-0.59266,364.72,-0.86133,0.13439,-0.48994,258.32,0.45982,0.61632,-0.63931,-16.858,#5,0.21604,-0.77594,-0.59266,364.72,-0.86133,0.13439,-0.48994,258.32,0.45982,0.61632,-0.63931,-16.858,#7,0.98977,-0.11764,0.080728,5.525,0.11509,0.99272,0.035583,-20.538,-0.084326,-0.025927,0.9961,15.934
> view matrix models
> #4,0.057822,-0.25378,-0.96553,364.72,-0.83892,0.51193,-0.18479,143.22,0.54118,0.82069,-0.1833,-137.37,#5,0.057822,-0.25378,-0.96553,364.72,-0.83892,0.51193,-0.18479,143.22,0.54118,0.82069,-0.1833,-137.37,#7,0.77732,0.28172,0.5625,-8.5745,-0.36669,0.92943,0.041242,67.307,-0.51118,-0.23832,0.82577,113.12
> view matrix models
> #4,0.074397,-0.36355,-0.9286,374.07,-0.85038,0.46325,-0.24949,163.53,0.52088,0.80823,-0.27469,-117.25,#5,0.074397,-0.36355,-0.9286,374.07,-0.85038,0.46325,-0.24949,163.53,0.52088,0.80823,-0.27469,-117.25,#7,0.84514,0.22924,0.4829,-12.843,-0.29029,0.95539,0.054502,51.598,-0.44886,-0.18624,0.87398,96.352
> view matrix models
> #4,0.083298,-0.33905,-0.93708,370.09,-0.90808,0.36147,-0.2115,182.76,0.41043,0.86855,-0.27777,-109.72,#5,0.083298,-0.33905,-0.93708,370.09,-0.90808,0.36147,-0.2115,182.76,0.41043,0.86855,-0.27777,-109.72,#7,0.83109,0.2298,0.50644,-11.617,-0.23516,0.97043,-0.054432,46.45,-0.50397,-0.073856,0.86056,99.028
> view matrix models
> #4,-0.06363,-0.41129,-0.90928,399.81,-0.8066,0.55772,-0.19582,132.6,0.58766,0.72097,-0.36723,-98.04,#5,-0.06363,-0.41129,-0.90928,399.81,-0.8066,0.55772,-0.19582,132.6,0.58766,0.72097,-0.36723,-98.04,#7,0.86168,0.33472,0.3814,-17.755,-0.39458,0.91456,0.088823,70.778,-0.31908,-0.22703,0.92013,74.212
> volume #7.1 level 0.006631
> view matrix models
> #4,0.059525,-0.41935,-0.90587,381.97,-0.75059,0.57945,-0.31757,140.67,0.65808,0.69884,-0.28027,-119.4,#5,0.059525,-0.41935,-0.90587,381.97,-0.75059,0.57945,-0.31757,140.67,0.65808,0.69884,-0.28027,-119.4,#7,0.87551,0.22177,0.4293,-14.703,-0.33609,0.91782,0.2113,54.483,-0.34716,-0.32928,0.8781,88.149
> select clear
> hide #!7 models
> hide #!6 models
> show #!7 models
> show #!6 models
> hide #!6.2 models
> hide #!6.3 models
> hide #!7.2 models
> hide #!7.3 models
> show #!1 models
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/Sessions/B1apo_sapA_nano.cxs
> ui tool show "Side View"
> select add #1
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 2 models selected
> select add #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 4 models selected
> select add #6
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 12 models selected
> view matrix models
> #1,-0.77287,-0.55615,0.30556,275.45,-0.32487,-0.066867,-0.94339,312.53,0.5451,-0.82839,-0.129,192.06,#2,-0.77287,-0.55615,0.30556,275.45,-0.32487,-0.066867,-0.94339,312.53,0.5451,-0.82839,-0.129,192.06,#6,-0.75835,-0.5702,0.31586,269.48,-0.34245,-0.063801,-0.93737,317.98,0.55464,-0.81902,-0.14688,202.49
> select subtract #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 10 models selected
> select subtract #1
8 models selected
> select add #4
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 10 models selected
> select add #5
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 12 models selected
> select subtract #6
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 4 models selected
> select add #7
8976 atoms, 9137 bonds, 2 pseudobonds, 1166 residues, 12 models selected
> view matrix models
> #4,0.011424,-0.42161,-0.90671,389.74,-0.77438,0.56994,-0.27477,138.76,0.63262,0.70528,-0.31997,-110.06,#5,0.011424,-0.42161,-0.90671,389.74,-0.77438,0.56994,-0.27477,138.76,0.63262,0.70528,-0.31997,-110.06,#7,0.87417,0.26456,0.40723,-16.343,-0.35546,0.91995,0.16538,59.918,-0.33088,-0.28932,0.89823,81.605
> view matrix models
> #4,-0.0529,-0.44102,-0.89594,400.85,-0.76209,0.59761,-0.24917,128.16,0.64531,0.6696,-0.36771,-98.272,#5,-0.0529,-0.44102,-0.89594,400.85,-0.76209,0.59761,-0.24917,128.16,0.64531,0.6696,-0.36771,-98.272,#7,0.87856,0.3136,0.36027,-18.2,-0.39186,0.90451,0.16826,67.147,-0.2731,-0.289,0.91755,70.636
> hide #!7 models
> hide #!6 models
> select clear
> select add #1
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 2 models selected
> select add #2
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 4 models selected
> select add #6
8664 atoms, 8806 bonds, 2 pseudobonds, 1102 residues, 11 models selected
> view matrix models
> #1,-0.7704,-0.55833,0.30782,275.2,-0.32649,-0.069214,-0.94266,312.96,0.54763,-0.82672,-0.12897,191.53,#2,-0.7704,-0.55833,0.30782,275.2,-0.32649,-0.069214,-0.94266,312.96,0.54763,-0.82672,-0.12897,191.53,#6,-0.75581,-0.57237,0.31805,269.24,-0.34402,-0.066178,-0.93663,318.4,0.55714,-0.81732,-0.14689,201.98
> view matrix models
> #1,-0.7363,-0.65463,0.17125,301.05,-0.21799,-0.01011,-0.9759,296.32,0.64058,-0.75589,-0.13526,171.82,#2,-0.7363,-0.65463,0.17125,301.05,-0.21799,-0.01011,-0.9759,296.32,0.64058,-0.75589,-0.13526,171.82,#6,-0.723,-0.66699,0.18001,297.06,-0.23709,-0.0051799,-0.97147,302.63,0.64889,-0.74505,-0.15439,182.71
> view matrix models
> #1,-0.70859,-0.68304,0.17707,301.14,-0.30263,0.067485,-0.95072,292.19,0.63743,-0.72725,-0.25453,182.47,#2,-0.70859,-0.68304,0.17707,301.14,-0.30263,0.067485,-0.95072,292.19,0.63743,-0.72725,-0.25453,182.47,#6,-0.69476,-0.69503,0.18503,297.5,-0.32235,0.070926,-0.94396,297.12,0.64296,-0.71547,-0.27332,194.16
> view matrix models
> #1,-0.78147,-0.60826,0.139,303.62,-0.20151,0.035208,-0.97885,288.49,0.5905,-0.79296,-0.15008,184.47,#2,-0.78147,-0.60826,0.139,303.62,-0.20151,0.035208,-0.97885,288.49,0.5905,-0.79296,-0.15008,184.47,#6,-0.76948,-0.62103,0.14905,299.25,-0.22135,0.040403,-0.97436,294.71,0.59908,-0.78274,-0.16855,195.26
> select clear
> show #!2 models
> show #!5 models
> show #!6 models
> show #!7 models
> hide #!5 models
> hide #!2 models
> hide #!6 models
> hide #!7 models
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/B1_apo_sapo_nano_cartoon.png width
> 3600 height 3600 transparentBackground true
> show #!6 models
> show #!7 models
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/B1_apo_sapo_nano_cartoon_beltmap.png
> width 3600 height 3600 transparentBackground true
> show #!6.2 models
> show #!6.3 models
> show #!7.2 models
> show #!7.3 models
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/B1_apo_sapo_nano_cartoon_surface.png
> width 3600 height 3600 transparentBackground true
> hide #!3 models
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/B1_apo_sapo_nano_cartoon_surface_2.png
> width 3600 height 3600 transparentBackground true
> save /Users/aa-
> lab/Desktop/B1paper_20240221/MSP1D1_SapA/Sessions/B1apo_sapA_nano.cxs
——— End of log from Sat Feb 8 19:16:03 2025 ———
opened ChimeraX session
OpenGL version: 4.1 ATI-6.1.13
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac19,2
Processor Name: 6-Core Intel Core i5
Processor Speed: 3 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Memory: 8 GB
System Firmware Version: 2069.0.0.0.0
OS Loader Version: 582~2898
SMC Version (system): 2.47f3
Software:
System Software Overview:
System Version: macOS 15.2 (24C101)
Kernel Version: Darwin 24.2.0
Time since boot: 52 days, 22 hours, 44 minutes
Graphics/Displays:
Radeon Pro 560X:
Chipset Model: Radeon Pro 560X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c2
ROM Revision: 113-C981AA-042
VBIOS Version: 113-C9819A1X-009
EFI Driver Version: 01.B1.042
Metal Support: Metal 2
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 4096 x 2304 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P3221D:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 59.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 89STZ13
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 8 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash during mouse drag |
comment:2 by , 8 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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