![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 9 months ago
Closed 9 months ago
#16825 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
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{
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"procRole" : "Background",
"version" : 2,
"userID" : 1441484248,
"deployVersion" : 210,
"modelCode" : "Mac16,5",
"coalitionID" : 1287,
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"build" : "24D60",
"releaseType" : "User"
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"captureTime" : "2025-02-10 16:42:06.8972 +0100",
"codeSigningMonitor" : 2,
"incident" : "97D5C57B-02DB-459D-8719-3815CFA7A6B8",
"pid" : 19923,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-02-10 08:33:17.0808 +0100",
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"procExitAbsTime" : 14865402016892,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 69413,
"coalitionName" : "com.apple.Terminal",
"crashReporterKey" : "463002AC-9A46-E5A5-7692-EE5859975FF9",
"responsiblePid" : 1746,
"responsibleProc" : "Terminal",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
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Log:
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_1-200_1101-1342_mre11_1_500>_dimer_31aa5/predictions/hrad50_1-200_1101-1312_mre11_1_500_dimeres/models/rad50_rif2bat_trf2iDDR_analyse_250210.cxs
Log from Mon Feb 10 16:14:30 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_002_alphafold2_multimer_v3_model_1_seed_85090.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_85088.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_004_alphafold2_multimer_v3_model_2_seed_85089.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_005_alphafold2_multimer_v3_model_4_seed_85088.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_48c50/predictions/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30/models/scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_85090.pdb
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb
#1
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_002_alphafold2_multimer_v3_model_1_seed_85090.pdb
#2
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_85088.pdb
#3
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_004_alphafold2_multimer_v3_model_2_seed_85089.pdb
#4
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_005_alphafold2_multimer_v3_model_4_seed_85088.pdb
#5
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_85090.pdb
#6
---
Chain | Description
A | No description available
B | No description available
C | No description available
Computing secondary structure
[Repeated 5 time(s)]
> set bgColor white
> mmaker #5 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_005_alphafold2_multimer_v3_model_4_seed_85088.pdb,
chain B (#5), sequence alignment score = 1102.4
RMSD between 209 pruned atom pairs is 0.395 angstroms; (across all 210 pairs:
0.421)
> mmaker #2 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_002_alphafold2_multimer_v3_model_1_seed_85090.pdb,
chain B (#2), sequence alignment score = 1102.4
RMSD between 210 pruned atom pairs is 0.149 angstroms; (across all 210 pairs:
0.149)
> mmaker #3 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_85088.pdb,
chain B (#3), sequence alignment score = 1102.4
RMSD between 210 pruned atom pairs is 0.294 angstroms; (across all 210 pairs:
0.294)
> mmaker #4 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_004_alphafold2_multimer_v3_model_2_seed_85089.pdb,
chain B (#4), sequence alignment score = 1102.4
RMSD between 210 pruned atom pairs is 0.291 angstroms; (across all 210 pairs:
0.291)
> color /A cornflower blue
> color /B cornflower blue
> mmaker #6 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_006_alphafold2_multimer_v3_model_2_seed_85090.pdb,
chain B (#6), sequence alignment score = 1102.4
RMSD between 210 pruned atom pairs is 0.263 angstroms; (across all 210 pairs:
0.263)
> select /C
1422 atoms, 1434 bonds, 180 residues, 6 models selected
> rainbow sel
> close #6
> graphics silhouettes true
> lighting soft
> open
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_c46a6/predictions/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478/models/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_c46a6/predictions/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478/models/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_19649.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_c46a6/predictions/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478/models/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_19648.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_c46a6/predictions/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478/models/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_19647.pdb
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_c46a6/predictions/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478/models/hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_19647.pdb
Chain information for
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb
#6
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_19649.pdb
#7
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_19648.pdb
#8
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_19647.pdb
#9
---
Chain | Description
A | No description available
B | No description available
C | No description available
Chain information for
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_19647.pdb
#10
---
Chain | Description
A | No description available
B | No description available
C | No description available
Computing secondary structure
[Repeated 4 time(s)]
> mmaker #7 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_19649.pdb,
chain B (#7), sequence alignment score = 1085.2
RMSD between 212 pruned atom pairs is 0.153 angstroms; (across all 212 pairs:
0.153)
> mmaker #8 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_19648.pdb,
chain B (#8), sequence alignment score = 1088.2
RMSD between 212 pruned atom pairs is 0.256 angstroms; (across all 212 pairs:
0.256)
> mmaker #6 to #1
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6), sequence alignment score = 686.3
RMSD between 138 pruned atom pairs is 0.755 angstroms; (across all 204 pairs:
2.900)
> mmaker #7 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_19649.pdb,
chain B (#7), sequence alignment score = 1085.2
RMSD between 212 pruned atom pairs is 0.153 angstroms; (across all 212 pairs:
0.153)
> mmaker #8 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_003_alphafold2_multimer_v3_model_2_seed_19648.pdb,
chain B (#8), sequence alignment score = 1088.2
RMSD between 212 pruned atom pairs is 0.256 angstroms; (across all 212 pairs:
0.256)
> mmaker #9 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_19647.pdb,
chain B (#9), sequence alignment score = 1075.6
RMSD between 205 pruned atom pairs is 0.391 angstroms; (across all 212 pairs:
0.720)
> mmaker #10 to #6
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb,
chain B (#6) with
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_19647.pdb,
chain B (#10), sequence alignment score = 1081.6
RMSD between 200 pruned atom pairs is 0.444 angstroms; (across all 212 pairs:
0.872)
> select #6-10/A/B
16495 atoms, 16710 bonds, 2060 residues, 5 models selected
> ui tool show "Color Actions"
> color sel royal blue
> select clear
> select #6-10/C
1175 atoms, 1200 bonds, 145 residues, 5 models selected
> rainbow sel
> hide #6 models
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> save
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/Super_scRad50_rif2Bat_1_30_5bestStr.png
> width 1152 height 812 supersample 3
> show #6 models
> show #7 models
> show #8 models
> show #9 models
> show #10 models
> hide #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> save
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/Super_hRad50_trf2iDDR_448_478_5bestStr.png
> width 1152 height 812 supersample 3
> select clear
> save
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/Super_hRad50_trf2iDDR_448_478_5bestStr.png
> width 1152 height 812 supersample 3
> hide #7 models
> hide #8 models
> hide #9 models
> hide #10 models
> show #1 models
> hide #1 models
> select #6/C
235 atoms, 240 bonds, 29 residues, 1 model selected
> show sel atoms
> show #1 models
> select #1/C
237 atoms, 239 bonds, 30 residues, 1 model selected
> show sel atoms
> color #1/C gold
> color #1/C green
> color #6/C orange
> style sel ball
Changed 237 atom styles
> color sel byhetero
> select #6/C
235 atoms, 240 bonds, 29 residues, 1 model selected
> style sel ball
Changed 235 atom styles
> color sel byhetero
Alignment identifier is 6/C
> renumber #6/C start 448
29 residues renumbered
> select zone #1/C 4.0 #1/A/B residues true
Selected 269 atoms
> show sel atoms
> hide #6 models
> style sel ball
Changed 269 atom styles
> color sel byhetero
> select zone #6/C 4.0 #6/A/B residues true
Selected 235 atoms
> show #6 models
> hide #1 models
> show sel atoms
> style sel ball
Changed 235 atom styles
> color sel byhetero
> renumber #1/A start 1
0 residues renumbered
> renumber #1/B start 1101
210 residues renumbered
> renumber #6/B start 1101
212 residues renumbered
> select #6/A/B
3299 atoms, 3342 bonds, 412 residues, 1 model selected
Alignment identifier is 6/A
Alignment identifier is 6/B
> ui mousemode right label
> label #6/C:452
> label #6/B:1274
> label #6/B:1307
> label #6/B:1309
> label #6/B:1286
> label #6/C:452
> label #6/C:451
> label #6/B:1275
> label #6/B:1288
> ui mousemode right select
> select #6/C:454@CB
1 atom, 1 residue, 1 model selected
> view sel
> ui tool show "Side View"
> select #6/B:1290@NZ
1 atom, 1 residue, 1 model selected
> ui mousemode right label
> label #6/B:1290
> label #6/C:459
> label #6/C:460
> label #6/B:1301
> label #6/C:461
> label #6/B:1298
> ui mousemode right translate
> ui mousemode right distance
> distance #6/C:462@OE1 #6/B:1287@OH
Distance between
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb
#6/C GLU 462 OE1 and /B TYR 1287 OH: 2.800Å
> ui mousemode right label
> label #6/C:462
> label #6/B:1287
> label #6/A:46
> label delete residues
> label #6/A:46
> label delete residues
[Repeated 1 time(s)]
> label #6/A:46
> label #6/C:462
> ui mousemode right translate
> ui mousemode right label
> label #6/C:464
> label #6/A:24
> label #6/C:470
> ui mousemode right distance
> distance #6/C:464@NE1 #6/A:85@OE1
Distance between
hrad50_monomer_1-200_1101-1312_trf2IDDR_448_478_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_19647.pdb
#6/C TRP 464 NE1 and /A GLN 85 OE1: 3.304Å
> ui mousemode right label
> label #6/A:6
> label #6/A:83
> label #6/C:471
> label #6/A:95
> label #6/A:119
> label #6/A:117
> label #6/A:5
> show #1 models
> label #6/A:34
> ui mousemode right translate
> select #1,6/C
472 atoms, 479 bonds, 59 residues, 2 models selected
> show sel atoms
> hide sel atoms
> select clear
> select #1,6/A,B
6574 atoms, 6669 bonds, 822 residues, 2 models selected
> hide sel atoms
> select clear
> save
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/super_rf2bat_trf2iddr_on_hRad50-scRad50.png
> width 1152 height 812 supersample 3
> hide #1 models
> show #1 models
> hide #!6 models
> select #1/C
237 atoms, 239 bonds, 30 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 237 atom styles
> select zone #1/C 4.0 #/A/B residue t
Expected an objects specifier or a keyword
> select zone #1/C 4.0 #1/A/B residues true
Selected 269 atoms
> show sel atoms
> style sel ball
Changed 269 atom styles
> color sel byhetero
> select clear
> ui mousemode right label
> label #1/C:24
> label #1/B:1277
> label #1/A:33
> label #1/C:23
> label #1/B:1289
> label #1/B:1307
> show #!6 models
> select #6/C
235 atoms, 240 bonds, 29 residues, 1 model selected
> show sel atoms
> label #1/C:17
> hide #!6 models
> label #1/C:12
> label #1/B:1301
> label #1/C:11
> label #1/B:1302
> label #1/C:8
> label #1/A:119
> label #1/A:83
> label #1/A:81
> label #1/A:6
> label #1/A:5
> label #1/B:1266
> ui mousemode right translate
> ui mousemode right select
> ui mousemode right label
> label #1/A:6
> label #1/A:93
> label #1/C:4
> label #1/C:5
> label #1/A:6
> label #1/C:7
> label #1/A:125
> select #6/C
235 atoms, 240 bonds, 29 residues, 1 model selected
> select #1/C
237 atoms, 239 bonds, 30 residues, 1 model selected
> hide sel atoms
> select #1/A/B
3275 atoms, 3327 bonds, 410 residues, 1 model selected
> hide sel atoms
> ~label sel residues
[Repeated 1 time(s)]
> select #1/A/B/C
3512 atoms, 3566 bonds, 440 residues, 1 model selected
> ~label sel residues
> open
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_1-200_1101-1342_mre11_1_500>_dimer_31aa5/predictions/hrad50_1-200_1101-1312_mre11_1_500_dimeres/models/hrad50_1-200_1101-1312_mre11_1_500_dimeres_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_15394.pdb
Chain information for
hrad50_1-200_1101-1312_mre11_1_500_dimeres_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_15394.pdb
#12
---
Chain | Description
A B | No description available
C D | No description available
E F | No description available
> hide sel atoms
> hide #!11 models
> hide #11.1 models
> hide #1 models
> show #1 models
> hide sel atoms
> select #12
14694 atoms, 14950 bonds, 1824 residues, 1 model selected
> hide sel atoms
> show sel cartoons
Computing secondary structure
> hide #1 models
> mmaker #12/C to #1/A
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain A (#1) with
hrad50_1-200_1101-1312_mre11_1_500_dimeres_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_15394.pdb,
chain C (#12), sequence alignment score = 50.1
RMSD between 17 pruned atom pairs is 0.828 angstroms; (across all 55 pairs:
18.780)
> show #1 models
> hide #12 models
> show #12 models
> mmaker #12/C to #1/B
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain B (#1) with
hrad50_1-200_1101-1312_mre11_1_500_dimeres_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_15394.pdb,
chain C (#12), sequence alignment score = 689.1
RMSD between 113 pruned atom pairs is 0.801 angstroms; (across all 204 pairs:
3.649)
> mmaker #12/A to #1/A
Computing secondary structure
[Repeated 1 time(s)] Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
scrad50_monomer_1_200_1100_1312_rif2Bat_1_30_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_85088.pdb,
chain A (#1) with
hrad50_1-200_1101-1312_mre11_1_500_dimeres_unrelaxed_rank_001_alphafold2_multimer_v3_model_1_seed_15394.pdb,
chain A (#12), sequence alignment score = 632.4
RMSD between 160 pruned atom pairs is 0.787 angstroms; (across all 198 pairs:
2.110)
> label #12/C:202
> ui mousemode right translate
> hide #1 models
> show #1 models
> hide #1 models
> hide #!12 models
> show #!12 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> select #12/A:204-212
Nothing selected
> select #12/A:204-212
Nothing selected
> select #12/C:204-212
67 atoms, 68 bonds, 9 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 67 atom styles
> color sel byhetero
> select zone #12/C:204-212 4.0 #12/E/F
Selected 12 atoms
> show sel atoms
> style sel ball
Changed 12 atom styles
> select zone #12/C:204-212 4.0 #12/E/F byresi
Expected a keyword
> select zone #12/C:204-212 4.0 #12/E/residue ti
Expected a keyword
> show sel atoms
> select zone #12/C:204-212 4.0 #12/E/residue t
Expected a keyword
> show sel atoms
> select zone #12/C:204-212 4.0 #12/E/F residues true
Selected 26 atoms
> show sel atoms
> style sel ball
Changed 26 atom styles
> color sel byhetero
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> select #12/A/C
3299 atoms, 3342 bonds, 412 residues, 1 model selected
> color sel cornlower blue
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color sel cornflower blue
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #1 models
> select #12
14694 atoms, 14950 bonds, 1824 residues, 2 models selected
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
> select #12/C-D:1
18 atoms, 16 bonds, 2 residues, 1 model selected
> select #12/C-D:1-2
36 atoms, 34 bonds, 4 residues, 1 model selected
> renumber #1/C start 1101
30 residues renumbered
> renumber #1/D start 1101
No residues specified
> renumber #1/C start 1
30 residues renumbered
> renumber #12/C start 1101
212 residues renumbered
> renumber #12/D start 1101
212 residues renumbered
> save
> /Users/pc126390/Integrative_Modelling/Projet_scRad50_rif2BAT/ALphaFold2_I2BC/hrad50_1-200_1101-1342_mre11_1_500>_dimer_31aa5/predictions/hrad50_1-200_1101-1312_mre11_1_500_dimeres/models/rad50_rif2bat_trf2iDDR_analyse_250210.cxs
——— End of log from Mon Feb 10 16:14:30 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M4 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac16,5
Model Number: Z1FV000H9FN/A
Chip: Apple M4 Max
Total Number of Cores: 14 (10 performance and 4 efficiency)
Memory: 36 GB
System Firmware Version: 11881.81.2
OS Loader Version: 11881.81.2
Software:
System Software Overview:
System Version: macOS 15.3 (24D60)
Kernel Version: Darwin 24.3.0
Time since boot: 13 jours, 5 heures et 41 minutes
Graphics/Displays:
Apple M4 Max:
Chipset Model: Apple M4 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 32
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Cinema HD:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 9 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 9 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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