![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Sep 6, 2022:
- 2:23 PM ChangeLog edited by
- (diff)
- 1:16 PM Ticket #7553 (draw selection: glDrawBuffer: invalid operation) closed by
- can't reproduce: Graphics worked for a long time, then failed. Not clear why. May be …
- 1:00 PM Ticket #7559 (Hide cartoon: Cylinder end point, radii or rotation array not contiguous) closed by
- duplicate: This bug was fixed a month ago. Get a new ChimeraX daily build or …
- 12:56 PM 2022-9-8 created by
- 12:55 PM DeveloperMeetings edited by
- (diff)
- 12:54 PM DeveloperMeetings edited by
- (diff)
- 10:27 AM Ticket #7560 (Crash using QFileDialog.getSaveFileName) closed by
- can't reproduce: 1.3
- 9:59 AM Ticket #7558 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:58 AM Ticket #7557 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate
- 9:57 AM Ticket #7556 (Mismatch between Cocoa and Carbon for virtual key) closed by
- can't reproduce
- 9:54 AM Ticket #7555 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.4 before Python upgrade
- 9:52 AM Ticket #7554 (Restore new session in old version) closed by
- duplicate
Sep 5, 2022:
- 2:52 PM Ticket #7560 (Crash using QFileDialog.getSaveFileName) created by
- […]
- 12:48 AM Ticket #7559 (Hide cartoon: Cylinder end point, radii or rotation array not contiguous) created by
- […]
Sep 4, 2022:
- 11:32 PM Ticket #7558 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:15 PM Ticket #7557 (Basic Actions: 'QEventLoop' object has no attribute 'exec_') created by
- […]
- 7:49 PM Ticket #7556 (Mismatch between Cocoa and Carbon for virtual key) created by
- […]
- 11:36 AM Ticket #7555 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:41 AM Ticket #7554 (Restore new session in old version) created by
- […]
Sep 3, 2022:
Sep 2, 2022:
- 5:20 PM Ticket #7551 (RFE: Handle the args from PyCharm's debugger) closed by
- fixed
- 5:05 PM Ticket #7552 (Make exported GLTF atom and ribbon colors work in Enduvo VR) created by
- Want Enduvo VR to be able to show atom and ribbon colors from GLTF …
- 3:15 PM Ticket #7550 (Surface transparency for surfaces meshes not working) closed by
- fixed: Fixed in tonight's ChimeraX build. Here's a tricky way to set the …
- 1:05 PM Ticket #7549 (Restore new session in old version) closed by
- duplicate
- 1:01 PM Ticket #7547 (Crash in QFileDialog.getOpenFileNames()) closed by
- can't reproduce: Duplicate of #7535
- 12:48 PM Ticket #7551 (RFE: Handle the args from PyCharm's debugger) created by
- I've been experimenting with PyCharm and find that it greatly enhances …
- 11:41 AM Ticket #7550 (Surface transparency for surfaces meshes not working) created by
- […]
- 11:37 AM Ticket #7549 (Restore new session in old version) created by
- […]
- 11:16 AM Ticket #7548 (Auto-style on 4 chain 120,000 atoms looks bad) created by
- […]
- 9:55 AM Ticket #7537 (Print statements not going to log) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/5735712d4c45def6b058739c8e4fc1 …
- 9:45 AM Ticket #7547 (Crash in QFileDialog.getOpenFileNames()) created by
- […]
- 9:28 AM Ticket #7546 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:12 AM Ticket #7546 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650) created by
- […]
Sep 1, 2022:
- 5:34 PM Ticket #7542 ("zoom" with negative scale factor: math domain error) closed by
- fixed: Fixed. Required zoom factor to be positive.
- 4:25 PM Ticket #7541 (Crash in _calculate_contour_surface) closed by
- can't reproduce: Possibly contouring a map with more than 2 Gvoxels. This was fixed a …
- 4:24 PM Ticket #7528 (chimerax-users subscription) closed by
- fixed: That's great! --Eric
- 4:22 PM Ticket #7539 (Segger session restore: KeyError: 'ijk_to_xyz_transform') closed by
- fixed: Fixed. Changed in Segger in ChimeraX 1.4 made session restore from …
- 4:21 PM Ticket #7543 (Crash at exit) closed by
- can't reproduce
- 3:52 PM Ticket #7538 (Mismatch between Cocoa and Carbon for virtual key) closed by
- can't reproduce: Again, crash is in NSTextInputContext()
- 2:43 PM 2022-9-1 edited by
- (diff)
- 2:40 PM Ticket #7358 (Update AlphaFold database sequence searches for July 2022 release of ...) closed by
- fixed: Done. More details #7346.
- 2:00 PM NIAID2022 edited by
- (diff)
- 1:58 PM NIAID2022 edited by
- (diff)
- 1:56 PM NIAID2022 edited by
- (diff)
- 1:28 PM NIAID2022 edited by
- (diff)
- 12:15 PM Ticket #7544 (ChimeraX crashes on start-up) created by
- Begin forwarded message: From: 胡玉霞 via ChimeraX-users …
- 12:06 PM Ticket #7543 (Crash at exit) created by
- […]
- 8:59 AM Ticket #7542 ("zoom" with negative scale factor: math domain error) created by
- […]
- 4:46 AM Ticket #7541 (Crash in _calculate_contour_surface) created by
- […]
- 1:52 AM Ticket #7540 (QObject::~QObject: Timers cannot be stopped from another thread) created by
- […]
- 12:19 AM Ticket #7539 (Segger session restore: KeyError: 'ijk_to_xyz_transform') created by
- […]
- 12:09 AM Ticket #7538 (Mismatch between Cocoa and Carbon for virtual key) created by
- […]
Aug 31, 2022:
- 8:14 PM Ticket #7537 (Print statements not going to log) created by
- […]
- 5:32 PM ChangeLog edited by
- (diff)
- 3:51 PM Ticket #7534 (Crash in QFileDialog.getOpenFileNames()) closed by
- duplicate: Duplicate of #7535
- 12:14 PM Ticket #7536 (_ArrayMemoryError reading MD coordinates in netcdf format, 34 Gbytes) created by
- […]
- 12:02 PM Ticket #7535 (Crash in QFileDialog.getOpenFileNames()) created by
- […]
- 12:02 PM Ticket #7534 (Crash in QFileDialog.getOpenFileNames()) created by
- […]
- 11:57 AM Ticket #7533 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: pre-Python 3.9.11
- 11:50 AM Ticket #7533 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 11:32 AM Ticket #7532 (Crash running dialog sub-event loop) closed by
- can't reproduce: No Python backtrace
- 11:13 AM Ticket #7530 (ISOLDE requirements) closed by
- limitation: Hi Dmitry, It looks like you installed the UI bundle from the …
- 11:08 AM Ticket #7013 (DICOM: RTSTRUCT not within the proper study in models hierarchy) closed by
- fixed: This will be fixed when I merge my DICOM metadata browser.
- 10:49 AM Ticket #7529 (Crash/abort at startup) closed by
- can't reproduce
- 6:10 AM Ticket #7532 (Crash running dialog sub-event loop) created by
- […]
- 4:30 AM Ticket #7531 (Menus obscured) created by
- […] snapshot.PNG
- 4:06 AM Ticket #7530 (ISOLDE requirements) created by
- […]
Aug 30, 2022:
- 11:31 PM Ticket #7529 (Crash/abort at startup) created by
- […]
- 7:12 PM Ticket #7528 (chimerax-users subscription) created by
- […]
- 1:05 PM Ticket #7458 (update uniref databases for blast protein) closed by
- duplicate
- 11:13 AM Ticket #7527 (Did not find any connected LookingGlass display) closed by
- nonchimerax: As the error message says, ChimeraX didn't find any LookingGlass …
- 10:54 AM Ticket #7526 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 10:49 AM Ticket #7525 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:42 AM Ticket #7346 (Make alphafold fetch and pae commands work with version 3 of the ...) closed by
- fixed: Done. ChimeraX daily builds now fetch from EBI Alphafold database …
- 10:08 AM 2022-9-1 created by
- 10:06 AM DeveloperMeetings edited by
- (diff)
- 7:10 AM Ticket #7527 (Did not find any connected LookingGlass display) created by
- […]
- 3:45 AM Ticket #7526 (Crash in QMainWindow::removeDockWidget) created by
- […]
Aug 29, 2022:
- 4:38 PM Dev2022-8-29 edited by
- (diff)
- 3:24 PM Ticket #7525 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:48 PM Ticket #7524 (Save image to desktop: permission denied) created by
- […]
- 1:36 PM ChangeLog edited by
- (diff)
- 10:51 AM Dev2022-8-29 created by
- 10:49 AM DeveloperMeetings edited by
- (diff)
- 10:01 AM Ticket #7521 (Graphics crash, macOS 10.15.5, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 8:57 AM Ticket #7523 (Error reading pbonds file) closed by
- duplicate: This was changed into a UserError awhile ago.
- 8:54 AM Ticket #7522 (Restore new session in old version) closed by
- not a bug
- 7:26 AM Ticket #7523 (Error reading pbonds file) created by
- […]
Aug 28, 2022:
Aug 26, 2022:
- 6:12 PM Ticket #7521 (Graphics crash, macOS 10.15.5, Intel Iris Plus Graphics 640) created by
- […]
- 6:10 PM Ticket #7520 (Copy html instead of plain text selection from Log with Mac Cmd+C) closed by
- fixed: Fixed. There was obsolete code in ChimeraX to work around some Qt 5.6 …
- 6:08 PM Ticket #7520 (Copy html instead of plain text selection from Log with Mac Cmd+C) created by
- […]
- 4:23 PM Ticket #7519 (Mismatch between Cocoa and Carbon for virtual key) closed by
- can't reproduce
- 2:36 PM Ticket #7519 (Mismatch between Cocoa and Carbon for virtual key) created by
- […]
- 2:18 PM Ticket #7517 (Can't write command history: No space left on device) closed by
- nonchimerax
- 2:17 PM Ticket #7516 (Can't write command history: No space left on device) closed by
- nonchimerax
- 2:16 PM Ticket #7515 (Can't write command history: No space left on device) closed by
- nonchimerax
- 2:14 PM Ticket #7514 (Can't write command history: No space left on device) closed by
- nonchimerax
- 2:09 PM Ticket #7513 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:05 PM WebJobInfo created by
- 2:00 PM WikiStart edited by
- (diff)
- 1:56 PM Ticket #7518 (Modeller web service errors not reported) created by
- Modeling a loop where the loop residues aren't provided fails but …
- 12:58 PM Ticket #7517 (Can't write command history: No space left on device) created by
- […]
- 12:57 PM Ticket #7516 (Can't write command history: No space left on device) created by
- […]
- 11:33 AM Ticket #7515 (Can't write command history: No space left on device) created by
- […]
- 11:32 AM Ticket #7514 (Can't write command history: No space left on device) created by
- […]
- 10:33 AM Ticket #7512 (Tautomers in alt locs) closed by
- limitation: Hi Tristan, In ChimeraX, alt locs are not designed for situations …
- 10:20 AM Ticket #7510 (Mac two displays with side view: glClear: invalid framebuffer operation) closed by
- can't reproduce: Probably Mac OpenGL graphics driver problem. User had two displays …
- 9:50 AM Ticket #7513 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) created by
- […]
- 9:05 AM Ticket #7511 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:02 AM Ticket #7509 (Crash in event loop) closed by
- can't reproduce
- 8:58 AM Ticket #7508 (Opening new session in old ChimeraX) closed by
- not a bug: Hi Nitesh, ChimeraX session files are forwards compatible (can be …
- 7:02 AM Ticket #7512 (Tautomers in alt locs) created by
- […]
- 7:00 AM Ticket #7511 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:09 AM Ticket #7510 (Mac two displays with side view: glClear: invalid framebuffer operation) created by
- […]
Aug 25, 2022:
- 10:29 PM Ticket #7509 (Crash in event loop) created by
- […]
- 6:30 PM Ticket #7508 (Opening new session in old ChimeraX) created by
- […]
- 6:07 PM ChangeLog edited by
- (diff)
- 4:42 PM ChangeLog edited by
- (diff)
- 4:02 PM 2022-8-25 edited by
- (diff)
- 3:38 PM Ticket #7507 (vop resample: glClear: invalid framebuffer operation) closed by
- nonchimerax: This appears to be a Qt bug on Mac related to dual displays, …
- 1:49 PM Dev2022-8-22 edited by
- (diff)
- 10:49 AM Ticket #7506 (Crash/hang showing Rapid Access at startup) closed by
- can't reproduce
- 10:48 AM Ticket #7505 (Crash destroying tool) closed by
- can't reproduce: Was using 19.9 GB at the time.
- 10:41 AM Ticket #7503 (Mismatch between Cocoa and Carbon for virtual key) closed by
- can't reproduce: Second report of this we've seen (#7445)
- 10:20 AM Ticket #7502 (Open new session in old ChimeraX) closed by
- not a bug
- 9:16 AM Ticket #7507 (vop resample: glClear: invalid framebuffer operation) created by
- […]
- 8:41 AM Ticket #7506 (Crash/hang showing Rapid Access at startup) created by
- […]
- 7:20 AM Ticket #7505 (Crash destroying tool) created by
- […]
- 6:26 AM Ticket #7504 (ISOLDE Deleting symmetry model: 'AtomicStructure' object has no ...) created by
- […]
- 12:13 AM Ticket #7503 (Mismatch between Cocoa and Carbon for virtual key) created by
- […]
Aug 24, 2022:
- 11:35 PM 2022-8-25 edited by
- (diff)
- 4:51 PM ChangeLog edited by
- (diff)
- 4:37 PM Ticket #7501 (Atom typing wrong) closed by
- fixed: Was actually addh changing the type. Fix: …
- 1:45 PM Ticket #7502 (Open new session in old ChimeraX) created by
- […] 6MEOCD4mutanalysisV4.cxs
- 11:26 AM Ticket #7501 (Atom typing wrong) created by
- In 3fx2 residue FMN, N10 is being typed as N2+ and N1 as N2, The …
- 11:16 AM Ticket #7500 (Make matchmaker command use nucleic matrix by default for RNA/DNA) created by
- […]
- 10:09 AM Ticket #7498 (_ArrayMemoryError resampling volume) closed by
- not a bug: The error message seems clear enough. Out of memory trying to …
- 10:03 AM Ticket #7499 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:00 AM Ticket #7497 (Unknown crash) closed by
- can't reproduce: Was using 10.1 GB at the time
- 5:05 AM Ticket #7499 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:51 AM Ticket #7498 (_ArrayMemoryError resampling volume) created by
- […]
- 1:13 AM Ticket #7497 (Unknown crash) created by
- […]
Aug 23, 2022:
- 8:12 PM Ticket #7496 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 4:52 PM Ticket #7496 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) created by
- […]
- 1:50 PM Ticket #7474 (allow user to specify job name (folder name) for alphafold predict) closed by
- fixed: Done. I added a "Results directory" entry field to the AlphaFold GUI …
- 11:54 AM Ticket #7495 (Make bundle_builder set MACOSX_DEPLOYMENT_TARGET) created by
- Tristan asks in ticket #4663 (Mac M1 port) comment 70 whether he needs …
- 10:49 AM 2022-8-25 created by
- 10:47 AM DeveloperMeetings edited by
- (diff)
- 9:24 AM Ticket #3667 (non-terminal O3' should not get protonated) closed by
- fixed: Fix: …
- 8:55 AM Ticket #7494 (set_pbgroup_py_instance: symbol not found) closed by
- duplicate
- 8:27 AM Ticket #7494 (set_pbgroup_py_instance: symbol not found) created by
- […]
- 7:11 AM Ticket #7493 (Unknown crash) created by
- […]
Aug 22, 2022:
- 10:02 PM Ticket #7419 (Drag select blacks out graphics) closed by
- fixed: Fixed. It is not clear if this is an OpenGL driver bug. When the …
- 6:57 PM Ticket #7486 (Crash computing ribbons) closed by
- can't reproduce: Appears it was in the C++ ribbon_extrusions() code called by …
- 6:22 PM Ticket #7482 (Operation not permitted opening file from HTML link) closed by
- not a bug: Yep, looks like the user clicked a recent file thumbnail image and did …
- 6:08 PM Ticket #7488 (make BILD transparency work) closed by
- limitation: Ticket #3838 explains that we do not have the resources (funding / …
- 5:54 PM Ticket #7492 (Can ChimeraX with Qt 6 run on Debian 9?) closed by
- not a bug: Just noting the GitHub discussion in Trac so we can easily find it.
- 5:53 PM Ticket #7492 (Can ChimeraX with Qt 6 run on Debian 9?) created by
- Looks like Debian 9 Linux distro based on glibc 2.24 is too old to run …
- 5:51 PM Ticket #7342 (Axes/Planes/Centroids tool) closed by
- fixed
- 4:41 PM Dev2022-8-22 edited by
- (diff)
- 4:37 PM Dev2022-8-22 created by
- 4:28 PM DeveloperMeetings edited by
- (diff)
- 12:10 PM Ticket #7490 (read CASTp) closed by
- duplicate: Hi Andrea, Chimera and ChimeraX are different programs. Chimera has …
- 12:06 PM Ticket #7491 (Make --cmd startup option behave like executing a script in its ...) closed by
- fixed: Fixed. Made the commands given with the --cmd option run as if they …
- 12:04 PM Ticket #7491 (Make --cmd startup option behave like executing a script in its ...) created by
- Christian noted that the shell --cmd option in ChimeraX where several …
- 11:38 AM Ticket #7485 (Surface.vertices is None) closed by
- duplicate: Duplicate of #7466
- 11:34 AM Ticket #7490 (read CASTp) created by
- […]
- 11:30 AM Ticket #7487 (H-bonds: cannot import name 'report_exception' from 'chimerax.core.logger') closed by
- fixed: Fix: …
- 11:26 AM Ticket #7466 (Coloring surface: self.vertices is None) closed by
- fixed: Fixed. This error in color command was caused by the previous failed …
- 11:15 AM Ticket #7484 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 11:14 AM Ticket #7483 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.2.5
- 10:57 AM Ticket #7489 (Test if ticket assigned to tic20 uses Tristan's old or new email address) closed by
- not a bug
- 10:53 AM Ticket #7489 (Test if ticket assigned to tic20 uses Tristan's old or new email address) created by
- 10:42 AM Ticket #7480 (Opening new session in old ChimeraX) closed by
- duplicate
- 10:41 AM Ticket #7479 (Crash draining NSAutoreleasePool during dialog exec) closed by
- can't reproduce: Supposedly happens when an object is released more times that it's …
- 10:20 AM Ticket #7430 (why does this script show DICOM as surface style?) closed by
- fixed: Forgot to commit the fix to the git code repository. I guess I was in …
- 10:19 AM Ticket #7431 ("close session" does not reset volume model color rotation) closed by
- fixed
- 9:24 AM Ticket #7488 (make BILD transparency work) created by
- From Francois Berenger: In the old Chimera (not X), if I put two …
- 7:52 AM Ticket #7487 (H-bonds: cannot import name 'report_exception' from 'chimerax.core.logger') created by
- […]
- 3:04 AM Ticket #7486 (Crash computing ribbons) created by
- […]
- 1:48 AM Ticket #7485 (Surface.vertices is None) created by
- […]
- 1:13 AM Ticket #7484 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Aug 21, 2022:
- 11:49 PM Ticket #7483 (Crash using File→Open on Windows) created by
- […]
- 1:27 PM Ticket #7482 (Operation not permitted opening file from HTML link) created by
- […]
- 5:30 AM Ticket #7481 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
Aug 20, 2022:
Aug 19, 2022:
- 11:07 AM Ticket #7479 (Crash draining NSAutoreleasePool during dialog exec) created by
- […]
- 9:21 AM Ticket #7478 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:20 AM Ticket #7477 (Crash during SMILES translation) closed by
- can't reproduce
- 9:17 AM Ticket #7476 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:12 AM Ticket #7475 (No symmetries for 2bbv) closed by
- duplicate: Asked and answered on the chimerax-users list.
- 6:18 AM Ticket #7478 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:26 AM Ticket #7477 (Crash during SMILES translation) created by
- […]
- 12:36 AM Ticket #7476 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Aug 18, 2022:
- 6:20 PM Ticket #7475 (No symmetries for 2bbv) created by
- […] 2bbv practice.cxs
- 4:30 PM Ticket #7473 (name 'notImplemented' is not defined) closed by
- fixed
- 3:40 PM Ticket #7471 (Incomplete secondary structure) closed by
- duplicate: Asked and answered on the chimerax-users list.
- 3:20 PM Ticket #7474 (allow user to specify job name (folder name) for alphafold predict) created by
- Elaine: paraphrase of conversation with Phil during NIAID zoom …
- 1:42 PM NIAID2022 edited by
- (diff)
- 12:13 PM Ticket #7473 (name 'notImplemented' is not defined) created by
- […]
- 8:35 AM Ticket #7472 (Crash or hang at startup) created by
- […]
Aug 17, 2022:
- 4:02 PM Ticket #7471 (Incomplete secondary structure) created by
- […] Screen Shot 2022-08-15 at 10.54.07 PM.png
- 1:38 PM Ticket #7470 (Start simulation: openmm.OpenMMException: Error compiling kernel: ...) created by
- […]
- 10:43 AM Ticket #7469 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by
- limitation: The Ubuntu and RHEL packages have dependencies that pull this in. So …
- 10:31 AM Ticket #7468 (Hang/crash at startup) closed by
- can't reproduce
Aug 16, 2022:
- 4:56 PM Ticket #7469 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 3:01 PM Ticket #7468 (Hang/crash at startup) created by
- […]
- 11:34 AM Ticket #7440 (Emulate Chimera per-helix coloring) closed by
- fixed: Available in next daily build
- 10:53 AM Ticket #7452 (Problem reading ORCA output file) closed by
- fixed
- 10:29 AM Ticket #7467 (Coloring surface: self.vertices is None) closed by
- duplicate: Duplicate of #7466
- 9:38 AM Ticket #7464 (Session save: seg fault appending to unprocessed list) closed by
- can't reproduce: Hi Shayan, Thanks for reporting this problem. I would recommend that …
- 9:32 AM Ticket #7460 (FindHBond: accPhiPsi() takes exactly 8 arguments (9 given)) closed by
- can't reproduce: Probably something hinky about the structure
- 7:57 AM Ticket #7467 (Coloring surface: self.vertices is None) created by
- […]
- 7:57 AM Ticket #7466 (Coloring surface: self.vertices is None) created by
- […]
- 4:40 AM Ticket #7465 (Crash showing Rapid Access at startup) created by
- […]
Aug 15, 2022:
- 8:58 PM Ticket #7464 (Session save: seg fault appending to unprocessed list) created by
- […]
- 3:40 PM Ticket #7463 (Additional phenix/douse enhancements) created by
- limit density values to 3 significant digits (Rotamers too) reveal map …
- 3:32 PM Ticket #7462 (Sequence Viewer context menu "blast" should provide more options) created by
- ... instead of always just using defaults, which prevents blasting …
- 3:10 PM Ticket #7461 (Blast Results dialog: add buttons for same actions as in context menu) created by
- The context menu actions are not very discoverable by people who don't …
- 2:55 PM Ticket #7460 (FindHBond: accPhiPsi() takes exactly 8 arguments (9 given)) created by
- […]
- 2:44 PM Ticket #7431 ("close session" does not reset volume model color rotation) reopened by
- Also the following does not reset volume coloring, so I'm pretty sure …
- 2:35 PM Ticket #7430 (why does this script show DICOM as surface style?) reopened by
- This is not fixed... tested in UCSF ChimeraX version: …
- 2:16 PM Ticket #7459 (Cannot fetch mmCIF: Network is down) closed by
- fixed: Great! --Eric
- 1:40 PM Ticket #7459 (Cannot fetch mmCIF: Network is down) created by
- […]
- 11:56 AM Ticket #7457 ("move label" mouse mode broken) closed by
- fixed: Squirrel away PickedTriangle as attribute of PickedModel for code …
- 11:32 AM Ticket #7458 (update uniref databases for blast protein) created by
- I am told that we are using versions from 2012 (yikes) and that there …
- 11:01 AM Ticket #7457 ("move label" mouse mode broken) created by
- […]
- 9:46 AM Ticket #7447 (Newer-version check failure) closed by
- limitation: Then this was a bug during the web services upgrade process that …
- 9:20 AM Ticket #7456 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:19 AM Ticket #7455 (Crash in fork) closed by
- nonchimerax: Was using 9.0GB at the time
- 9:17 AM Ticket #7454 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics) closed by
- can't reproduce: Possible graphics driver bug
- 9:16 AM Ticket #7453 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) closed by
- can't reproduce: Hi Naeyma, Thanks for reporting this problem. I recommend you …
- 9:04 AM Ticket #7450 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:55 AM Ticket #7449 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:53 AM Ticket #7448 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 8:45 AM Ticket #7445 (Mismatch between Cocoa and Carbon for virtual key) closed by
- can't reproduce: Crash in text-input handling, possibly while trying to input an …
- 8:35 AM Ticket #7444 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 645) closed by
- can't reproduce: Graphics driver bug?
- 8:22 AM Ticket #7456 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:18 AM Ticket #7455 (Crash in fork) created by
- […]
- 6:01 AM Ticket #7454 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics) created by
- […]
- 12:31 AM Ticket #7453 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) created by
- […]
Aug 14, 2022:
- 7:37 AM Ticket #7452 (Problem reading ORCA output file) created by
- […] c3po-opt-freq-casscf-tz.out
- 7:30 AM Ticket #7451 (Problem reading ORCA output file) created by
- […]
Aug 13, 2022:
- 6:21 PM Ticket #7450 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:56 PM Ticket #7449 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:39 PM Ticket #7448 (Crash using File→Open on Windows) created by
- […]
- 12:52 AM Ticket #7447 (Newer-version check failure) created by
- […]
- 12:03 AM Ticket #7446 (Crash recording movie) created by
- […]
Aug 12, 2022:
- 10:08 PM Ticket #7445 (Mismatch between Cocoa and Carbon for virtual key) created by
- […]
- 6:52 PM Ticket #7444 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 645) created by
- […]
- 4:50 PM Ticket #7443 (Make easy shadowed transparent surface mode) created by
- It is common to show transparent surfaces (cryoEM or molecular) with …
- 3:40 PM Ticket #7441 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 3:36 PM Ticket #7407 (ArtiaX error after closing all models and opening new particle list) closed by
- fixed: I'll close this ticket since you don't have an account on our system …
- 3:30 PM Ticket #7442 (Toolshed web server logs are mostly missing after May 2022) created by
- It looks like the Toolshed web server logs are mostly missing from May …
- 2:46 PM Ticket #7437 (Crash starting ISOLDE simulation) closed by
- can't reproduce: Crashed in numpy making a triangulation for an atom sphere (a few …
- 10:49 AM Ticket #7435 (Speed up Blast Protein search by using 4 threads) closed by
- fixed: I've made the change. :) Glad you found a way to make this faster.
- 10:34 AM Ticket #7439 (Crash in AtomSearchTree) closed by
- duplicate: Probable duplicate of #7256
- 10:11 AM Ticket #7441 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics 655) created by
- […]
- 9:50 AM Ticket #7440 (Emulate Chimera per-helix coloring) created by
- In Chimera if you rainbow the ribbon and then make perhelix axes, they …
- 9:32 AM Ticket #7439 (Crash in AtomSearchTree) created by
- […]
- 9:14 AM Ticket #7436 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Early 1.4, before moving to the fixed version of Python
- 9:11 AM Ticket #7434 (Crash or hang at startup) closed by
- can't reproduce
- 8:08 AM Ticket #7438 (Toolshed bot traffic?) created by
- […]
Aug 11, 2022:
- 9:01 PM Ticket #7437 (Crash starting ISOLDE simulation) created by
- […]
- 7:47 PM Ticket #7436 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:01 PM Ticket #7435 (Speed up Blast Protein search by using 4 threads) created by
- Have blastp use 4 threads instead of the default 1 thread when running …
- 5:08 PM Ticket #7434 (Crash or hang at startup) created by
- […]
- 4:42 PM Ticket #7433 (Destruction of status bar during session restore: wrapped C/C++ object ...) closed by
- duplicate: Hi Maria, Thanks for reporting this problem. It has been fixed in …
- 4:36 PM Ticket #7432 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 4:33 PM Ticket #7429 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Maybe, maybe not.
- 4:28 PM Ticket #7427 (QMainWindowLayout::tabPosition called with out-of-bounds value) closed by
- can't reproduce: Seemed to occur after "Destroying pre-existing alignment with …
- 3:07 PM Ticket #7433 (Destruction of status bar during session restore: wrapped C/C++ object ...) created by
- […]
- 2:33 PM 2022-8-11 edited by
- (diff)
- 2:26 PM DeveloperMeetings edited by
- (diff)
- 2:03 PM Ticket #7431 ("close session" does not reset volume model color rotation) closed by
- fixed: Fixed. I made it reset the volume colors whenever you open a volume …
- 1:46 PM Ticket #7430 (why does this script show DICOM as surface style?) closed by
- fixed: Fixed. The code that made volumes update surfaces immediately in …
- 11:18 AM Ticket #7432 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 10:41 AM ChangeLog edited by
- (diff)
- 10:10 AM Ticket #7431 ("close session" does not reset volume model color rotation) created by
- If I open a map, then use "close session", then reopen the map, it is …
- 10:08 AM Ticket #7430 (why does this script show DICOM as surface style?) created by
- In older versions of ChimeraX (e.g. 0.9) this short script given …
- 5:05 AM Ticket #7429 (Crash showing Rapid Access at startup) created by
- […]
- 1:49 AM Ticket #7428 (Inconsistent stack trace information) created by
- […]
Aug 10, 2022:
- 1:39 PM Ticket #7427 (QMainWindowLayout::tabPosition called with out-of-bounds value) created by
- […]
- 11:29 AM Ticket #7426 (BlastProtein giving a warning when an error should be reported) created by
- […]
- 11:04 AM Dev2022-8-8 edited by
- (diff)
- 10:47 AM Ticket #7424 (ISOLDE color button: __init__() got an unexpected keyword argument ...) closed by
- duplicate: This is another instance of #7381. The ChimeraX 1.5.dev... daily …
- 10:34 AM Ticket #7423 (Crash deleting structures) closed by
- can't reproduce
- 10:33 AM Ticket #7422 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- can't reproduce: I'm not sure how this is possible. The user restores a session and …
- 10:13 AM Ticket #7425 (SEQCROW: wrapped C/C++ object of type DelayForcePrint has been deleted) closed by
- fixed
- 10:09 AM Ticket #7425 (SEQCROW: wrapped C/C++ object of type DelayForcePrint has been deleted) created by
- […]
- 9:08 AM Ticket #7418 (BLAST AlphaFold database version 3: Bad Request) closed by
- fixed: Bumped the allowable database versions on webservices; should be good …
- 2:25 AM Ticket #7424 (ISOLDE color button: __init__() got an unexpected keyword argument ...) created by
- […]
Aug 9, 2022:
- 9:05 PM Ticket #7423 (Crash deleting structures) created by
- […]
- 1:34 PM Ticket #7422 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 12:38 PM 2022-8-11 created by
- 12:37 PM DeveloperMeetings edited by
- (diff)
- 12:16 PM Ticket #7410 (Crash creating SEQCROW QMenuBar in ARM tech preview) closed by
- fixed: Sounds like your fake menus are a reasonable work-around. It might be …
- 10:30 AM Dev2022-8-8 edited by
- (diff)
- 10:23 AM Ticket #7360 (Crash in atom-spec parser) closed by
- can't reproduce: We intend to change our command parser anyway, which will probably …
- 9:57 AM Ticket #7421 ([ChimeraX] error) created by
- […]
- 9:16 AM Ticket #7420 (Scrollable Segger segment saving?) created by
- […]
Aug 8, 2022:
- 8:30 PM Ticket #7015 (DICOM: was "airways" preset always so dim?) closed by
- not a bug: The VR dicom lung image you link to appears to be maybe 5 or more …
- 7:53 PM Ticket #7205 (Morph: index out of bounds) closed by
- can't reproduce: No response from reporter.
- 7:52 PM Ticket #7239 (Log link to associated EMDB entry when PDB model opened) closed by
- fixed
- 7:51 PM Ticket #7290 (Crash loading dylib) closed by
- can't reproduce: No response from reporter.
- 7:50 PM Ticket #7296 (Crash loading dylib) closed by
- can't reproduce: No response from reporter.
- 7:49 PM Ticket #7309 (volume sel step 1: index out of range for ImageJ TIFF stack) closed by
- can't reproduce: No response from reporter.
- 7:48 PM Ticket #7069 (Surface session restore: updaters is None) closed by
- duplicate
- 7:46 PM Ticket #7405 (Revert rotate independent mouse mode to normal rotation when models closed) closed by
- fixed
- 7:10 PM Ticket #7414 (develop example bundles: missing bundle_api for bundle) closed by
- not a bug: Glad I could help. If there's anything of general utility we can do …
- 6:14 PM phenix-8-11-22 edited by
- (diff)
- 6:12 PM phenix-8-11-22 edited by
- (diff)
- 6:03 PM phenix-8-11-22 edited by
- (diff)
- 5:50 PM phenix-8-11-22 edited by
- (diff)
- 5:30 PM Ticket #7419 (Drag select blacks out graphics) created by
- […]
- 5:28 PM phenix-8-11-22 created by
- 5:25 PM Features edited by
- (diff)
- 5:19 PM Ticket #7418 (BLAST AlphaFold database version 3: Bad Request) created by
- […]
- 4:19 PM Dev2022-8-8 created by
- 4:18 PM Ticket #7417 ("cofr" info misleading) created by
- […]
- 4:13 PM ChangeLog edited by
- (diff)
- 4:11 PM DeveloperMeetings edited by
- (diff)
- 3:42 PM Ticket #7416 (SEQCROW: crash in Tools / Quantum Chemistry / Build QM Input) created by
- […]
- 3:22 PM Ticket #7415 (SEQCROW: argument 2 has unexpected type 'MatchFlag') created by
- […]
- 2:37 PM Ticket #7414 (develop example bundles: missing bundle_api for bundle) created by
- […]
- 1:55 PM Ticket #7395 (Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with ...) closed by
- nonchimerax: I tried pressing all manner of modifier keys and home, and other non …
- 1:53 PM Ticket #7412 (Crash in set_matrix after sym command) closed by
- can't reproduce: Maybe a graphics driver crash. Was setting a shader variable which …
- 1:26 PM Ticket #7402 (Crash at startup showing Rapid Access) closed by
- can't reproduce: The formats that ViewDockX can read are near the top of its Help page: …
- 11:21 AM Ticket #7411 (Timeout for Opal model-loops web service) closed by
- can't reproduce: Working now.
- 11:19 AM Ticket #7408 (Graphics crash, macOS 12.5, AMD Radeon R9 M395) closed by
- nonchimerax: Apple Intel graphics driver crash.
Aug 7, 2022:
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