![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7494 closed defect (duplicate)
set_pbgroup_py_instance: symbol not found
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Saving a session
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/martinpacesa/Downloads/C6.cxs
Opened cryosparc_P65_J28_002_volume_map.mrc as #1, grid size 160,160,160,
pixel 1.85, shown at level 0.121, step 1, values float32
Log from Tue Aug 23 13:26:26 2022
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> lighting soft
> set bgColor white
> distance style color black
[Repeated 1 time(s)]
> distance style decimalPlaces 1
[Repeated 1 time(s)]
> distance style dashes 7
[Repeated 1 time(s)]
> distance style symbol false
[Repeated 1 time(s)]
> style stick
Changed 0 atom styles
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/martinpacesa/Downloads/cryosparc_P65_J28_002_volume_map.mrc
Opened cryosparc_P65_J28_002_volume_map.mrc as #1, grid size 160,160,160,
pixel 1.85, shown at level 0.121, step 1, values float32
> open /Users/martinpacesa/Downloads/P0A6H6_V1_3_c6.pdb
Chain information for P0A6H6_V1_3_c6.pdb #2
---
Chain | Description
A B C D E F | No description available
> hide atoms
> show cartoons
> ui tool show "Fit in Map"
> fitmap #2 inMap #1
Fit molecule P0A6H6_V1_3_c6.pdb (#2) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 16884 atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 16884, contour level = 0.121
Position of P0A6H6_V1_3_c6.pdb (#2) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
> ui mousemode right rotate
> select add #2
16884 atoms, 17034 bonds, 42 pseudobonds, 2136 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.071606,-0.70161,-0.70896,21.116,-0.31904,0.68955,-0.65018,11.881,0.94503,0.17963,-0.27322,5.5656
> view matrix models
> #2,-0.31257,-0.78293,-0.53789,21.654,-0.46722,0.61974,-0.63057,13.302,0.82705,0.054215,-0.55951,10.544
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,20.262,-0.065695,0.46298,-0.88393,18.228,0.85292,-0.43371,-0.29055,18.525
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,144.23,-0.065695,0.46298,-0.88393,104.52,0.85292,-0.43371,-0.29055,122.71
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,178.32,-0.065695,0.46298,-0.88393,142.69,0.85292,-0.43371,-0.29055,180.59
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,177.25,-0.065695,0.46298,-0.88393,141.49,0.85292,-0.43371,-0.29055,179.26
> select subtract #2
Nothing selected
> select add #2
16884 atoms, 17034 bonds, 42 pseudobonds, 2136 residues, 2 models selected
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,182.14,-0.065695,0.46298,-0.88393,144.11,0.85292,-0.43371,-0.29055,143.77
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,179.72,-0.065695,0.46298,-0.88393,146.85,0.85292,-0.43371,-0.29055,144.28
> view matrix models
> #2,-0.51789,-0.77301,-0.36639,181.89,-0.065695,0.46298,-0.88393,148.38,0.85292,-0.43371,-0.29055,144.35
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.51945,-0.81701,-0.25034,181.89,-0.13611,0.36833,-0.91968,150.69,0.84359,-0.44366,-0.30253,144.66
> view matrix models
> #2,-0.52815,-0.80316,-0.27567,181.81,-0.11691,0.39033,-0.91322,150.17,0.84106,-0.4501,-0.30005,144.78
> select subtract #2
Nothing selected
> open 6PXI
Summary of feedback from opening 6PXI fetched from pdb
---
notes | Fetching compressed mmCIF 6pxi from
http://files.rcsb.org/download/6pxi.cif
Fetching CCD SO4 from http://ligand-expo.rcsb.org/reports/S/SO4/SO4.cif
Fetching CCD ADP from http://ligand-expo.rcsb.org/reports/A/ADP/ADP.cif
6pxi title:
The crystal structure of a singly capped HslUV complex with an axial pore plug
and a HslU E257Q mutation [more info...]
Chain information for 6pxi #3
---
Chain | Description | UniProt
A B C D | ATP-dependent protease subunit HslV | A0A0E0U6N7_ECOLX
E F | ATP-dependent protease ATPase subunit HslU | C3SIX7_ECOLX
Non-standard residues in 6pxi #3
---
ADP — adenosine-5'-diphosphate
SO4 — sulfate ion
6pxi mmCIF Assemblies
---
1| author_defined_assembly
> hide atoms
> show cartoons
> ui tool show Matchmaker
> matchmaker #!3 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with 6pxi, chain E (#3), sequence
alignment score = 1607
RMSD between 297 pruned atom pairs is 0.821 angstroms; (across all 344 pairs:
2.250)
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!1 models
> show #!1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JCX0_V1_3_c6.pdb
Chain information for A0A0H3JCX0_V1_3_c6.pdb #4
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JDD9_V1_3_c6.pdb
Chain information for A0A0H3JDD9_V1_3_c6.pdb #5
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JDT4_V1_4_c6.pdb
Chain information for A0A0H3JDT4_V1_4_c6.pdb #6
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JDX9_V1_3_c6.pdb
Chain information for A0A0H3JDX9_V1_3_c6.pdb #7
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JE69_V1_3_c6.pdb
Chain information for A0A0H3JE69_V1_3_c6.pdb #8
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JE71_V1_2_c6.pdb
Chain information for A0A0H3JE71_V1_2_c6.pdb #9
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JG53_V1_3_c6.pdb
Chain information for A0A0H3JG53_V1_3_c6.pdb #10
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JGT1_V1_4_c6.pdb
Chain information for A0A0H3JGT1_V1_4_c6.pdb #11
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JGY4_V1_3_c6.pdb
Chain information for A0A0H3JGY4_V1_3_c6.pdb #12
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JJ52_V1_4_c6.pdb
Chain information for A0A0H3JJ52_V1_4_c6.pdb #13
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JK24_V1_2_c6.pdb
Chain information for A0A0H3JK24_V1_2_c6.pdb #14
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A0H3JRB9_V1_2_c6.pdb
Chain information for A0A0H3JRB9_V1_2_c6.pdb #15
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A120LVA1_V1_4_c6.pdb
Chain information for A0A120LVA1_V1_4_c6.pdb #16
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A0A152UUM3_V1_4_c6.pdb
Chain information for A0A152UUM3_V1_4_c6.pdb #17
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A7UQW2_V1_3_c6.pdb
Chain information for A7UQW2_V1_3_c6.pdb #18
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A8B1I8_V1_2_c6.pdb
Chain information for A8B1I8_V1_2_c6.pdb #19
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/A8MWD9_V1_3_c6.pdb
Chain information for A8MWD9_V1_3_c6.pdb #20
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/C9JCN9_V1_2_c6.pdb
Chain information for C9JCN9_V1_2_c6.pdb #21
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O14818_V1_3_c6.pdb
Chain information for O14818_V1_3_c6.pdb #22
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O15381_V1_5_c6.pdb
Chain information for O15381_V1_5_c6.pdb #23
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O60220_V1_1_c6.pdb
Chain information for O60220_V1_1_c6.pdb #24
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O74700_V1_2_c6.pdb
Chain information for O74700_V1_2_c6.pdb #25
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O75351_V1_3_c6.pdb
Chain information for O75351_V1_3_c6.pdb #26
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O75712_V1_2_c6.pdb
Chain information for O75712_V1_2_c6.pdb #27
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O76031_V1_2_c6.pdb
Chain information for O76031_V1_2_c6.pdb #28
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O82884_V1_3_c6.pdb
Chain information for O82884_V1_3_c6.pdb #29
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O95377_V1_3_c6.pdb
Chain information for O95377_V1_3_c6.pdb #30
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/O95452_V1_4_c6.pdb
Chain information for O95452_V1_4_c6.pdb #31
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A6A1_V1_3_c6.pdb
Chain information for P0A6A1_V1_3_c6.pdb #32
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A6H3_V1_3_c6.pdb
Chain information for P0A6H3_V1_3_c6.pdb #33
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A6H6_V1_3_c6.pdb
Chain information for P0A6H6_V1_3_c6.pdb #34
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A6X5_V1_4_c6.pdb
Chain information for P0A6X5_V1_4_c6.pdb #35
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A9K2_V1_4_c6.pdb
Chain information for P0A9K2_V1_4_c6.pdb #36
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0A813_V1_2_c6.pdb
Chain information for P0A813_V1_2_c6.pdb #37
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0AAZ6_V1_3_c6.pdb
Chain information for P0AAZ6_V1_3_c6.pdb #38
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0ABB6_V1_1_c6.pdb
Chain information for P0ABB6_V1_1_c6.pdb #39
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0AC06_V1_3_c6.pdb
Chain information for P0AC06_V1_3_c6.pdb #40
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0AC99_V1_5_c6.pdb
Chain information for P0AC99_V1_5_c6.pdb #41
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0ACY5_V1_3_c6.pdb
Chain information for P0ACY5_V1_3_c6.pdb #42
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P0AFV1_V1_4_c6.pdb
Chain information for P0AFV1_V1_4_c6.pdb #43
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P06576_V1_3_c6.pdb
Chain information for P06576_V1_3_c6.pdb #44
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P23639_V1_3_c6.pdb
Chain information for P23639_V1_3_c6.pdb #45
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P25613_V1_4_c6.pdb
Chain information for P25613_V1_4_c6.pdb #46
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P32794_V1_4_c6.pdb
Chain information for P32794_V1_4_c6.pdb #47
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P32795_V1_5_c6.pdb
Chain information for P32795_V1_5_c6.pdb #48
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P32830_V1_5_c6.pdb
Chain information for P32830_V1_5_c6.pdb #49
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P32907_V1_1_c6.pdb
Chain information for P32907_V1_1_c6.pdb #50
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P35249_V1_3_c6.pdb
Chain information for P35249_V1_3_c6.pdb #51
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P35250_V1_4_c6.pdb
Chain information for P35250_V1_4_c6.pdb #52
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P36775_V1_4_c6.pdb
Chain information for P36775_V1_4_c6.pdb #53
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P36776_V1_4_c6.pdb
Chain information for P36776_V1_4_c6.pdb #54
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P38323_V1_2_c6.pdb
Chain information for P38323_V1_2_c6.pdb #55
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P38629_V1_3_c6.pdb
Chain information for P38629_V1_3_c6.pdb #56
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P38911_V1_5_c6.pdb
Chain information for P38911_V1_5_c6.pdb #57
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P39925_V1_3_c6.pdb
Chain information for P39925_V1_3_c6.pdb #58
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40046_V1_1_c6.pdb
Chain information for P40046_V1_1_c6.pdb #59
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40089_V1_1_c6.pdb
Chain information for P40089_V1_1_c6.pdb #60
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40339_V1_4_c6.pdb
Chain information for P40339_V1_4_c6.pdb #61
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40341_V1_3_c6.pdb
Chain information for P40341_V1_3_c6.pdb #62
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40348_V1_5_c6.pdb
Chain information for P40348_V1_5_c6.pdb #63
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P40937_V1_3_c6.pdb
Chain information for P40937_V1_3_c6.pdb #64
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P41212_V1_4_c6.pdb
Chain information for P41212_V1_4_c6.pdb #65
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P43321_V1_5_c6.pdb
Chain information for P43321_V1_5_c6.pdb #66
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P43545_V1_4_c6.pdb
Chain information for P43545_V1_4_c6.pdb #67
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P53299_V1_3_c6.pdb
Chain information for P53299_V1_3_c6.pdb #68
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P53824_V1_4_c6.pdb
Chain information for P53824_V1_4_c6.pdb #69
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P57744_V1_4_c6.pdb
Chain information for P57744_V1_4_c6.pdb #70
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P62072_V1_3_c6.pdb
Chain information for P62072_V1_3_c6.pdb #71
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P62304_V1_4_c6.pdb
Chain information for P62304_V1_4_c6.pdb #72
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Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P63145_V1_5_c6.pdb
Chain information for P63145_V1_5_c6.pdb #73
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P64425_V1_3_c6.pdb
Chain information for P64425_V1_3_c6.pdb #74
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P64605_V1_5_c6.pdb
Chain information for P64605_V1_5_c6.pdb #75
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/P81413_V1_2_c6.pdb
Chain information for P81413_V1_2_c6.pdb #76
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q5T2N8_V1_5_c6.pdb
Chain information for Q5T2N8_V1_5_c6.pdb #77
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q5T9A4_V1_4_c6.pdb
Chain information for Q5T9A4_V1_4_c6.pdb #78
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q5T442_V1_5_c6.pdb
Chain information for Q5T442_V1_5_c6.pdb #79
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q5TDP6_V1_3_c6.pdb
Chain information for Q5TDP6_V1_3_c6.pdb #80
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q6PEY0_V1_4_c6.pdb
Chain information for Q6PEY0_V1_4_c6.pdb #81
---
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A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q6ZWB6_V1_5_c6.pdb
Chain information for Q6ZWB6_V1_5_c6.pdb #82
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q7DB56_V1_5_c6.pdb
Chain information for Q7DB56_V1_5_c6.pdb #83
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q7DB71_V1_3_c6.pdb
Chain information for Q7DB71_V1_3_c6.pdb #84
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8IYT4_V1_4_c6.pdb
Chain information for Q8IYT4_V1_4_c6.pdb #85
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8N144_V1_1_c6.pdb
Chain information for Q8N144_V1_1_c6.pdb #86
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8N228_V1_4_c6.pdb
Chain information for Q8N228_V1_4_c6.pdb #87
---
Chain | Description
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> open /Users/martinpacesa/Downloads/ananas_C6/Q8TH07_V1_1_c6.pdb
Chain information for Q8TH07_V1_1_c6.pdb #88
---
Chain | Description
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> open /Users/martinpacesa/Downloads/ananas_C6/Q8TH09_V1_3_c6.pdb
Chain information for Q8TH09_V1_3_c6.pdb #89
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TH14_V1_4_c6.pdb
Chain information for Q8TH14_V1_4_c6.pdb #90
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TH16_V1_3_c6.pdb
Chain information for Q8TH16_V1_3_c6.pdb #91
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TZF9_V1_5_c6.pdb
Chain information for Q8TZF9_V1_5_c6.pdb #92
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TZT8_V1_3_c6.pdb
Chain information for Q8TZT8_V1_3_c6.pdb #93
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TZU3_V1_3_c6.pdb
Chain information for Q8TZU3_V1_3_c6.pdb #94
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8TZX8_V1_3_c6.pdb
Chain information for Q8TZX8_V1_3_c6.pdb #95
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U0N8_V1_1_c6.pdb
Chain information for Q8U0N8_V1_1_c6.pdb #96
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U0Q6_V1_4_c6.pdb
Chain information for Q8U0Q6_V1_4_c6.pdb #97
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U3F1_V1_5_c6.pdb
Chain information for Q8U3F1_V1_5_c6.pdb #98
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U3N9_V1_3_c6.pdb
Chain information for Q8U3N9_V1_3_c6.pdb #99
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U3Q1_V1_3_c6.pdb
Chain information for Q8U3Q1_V1_3_c6.pdb #100
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U4C6_V1_3_c6.pdb
Chain information for Q8U4C6_V1_3_c6.pdb #101
---
Chain | Description
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> open /Users/martinpacesa/Downloads/ananas_C6/Q8U4I5_V1_5_c6.pdb
Chain information for Q8U4I5_V1_5_c6.pdb #102
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U186_V1_3_c6.pdb
Chain information for Q8U186_V1_3_c6.pdb #103
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U187_V1_3_c6.pdb
Chain information for Q8U187_V1_3_c6.pdb #104
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8U211_V1_3_c6.pdb
Chain information for Q8U211_V1_3_c6.pdb #105
---
Chain | Description
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> open /Users/martinpacesa/Downloads/ananas_C6/Q8X5E6_V1_4_c6.pdb
Chain information for Q8X5E6_V1_4_c6.pdb #106
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X6E2_V1_3_c6.pdb
Chain information for Q8X6E2_V1_3_c6.pdb #107
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X6F1_V1_3_c6.pdb
Chain information for Q8X6F1_V1_3_c6.pdb #108
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X7D4_V1_3_c6.pdb
Chain information for Q8X7D4_V1_3_c6.pdb #109
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X7G9_V1_5_c6.pdb
Chain information for Q8X7G9_V1_5_c6.pdb #110
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X9L0_V1_3_c6.pdb
Chain information for Q8X9L0_V1_3_c6.pdb #111
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X613_V1_5_c6.pdb
Chain information for Q8X613_V1_5_c6.pdb #112
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X755_V1_3_c6.pdb
Chain information for Q8X755_V1_3_c6.pdb #113
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X860_V1_3_c6.pdb
Chain information for Q8X860_V1_3_c6.pdb #114
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X871_V1_4_c6.pdb
Chain information for Q8X871_V1_4_c6.pdb #115
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X905_V1_3_c6.pdb
Chain information for Q8X905_V1_3_c6.pdb #116
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8X975_V1_3_c6.pdb
Chain information for Q8X975_V1_3_c6.pdb #117
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XAC1_V1_2_c6.pdb
Chain information for Q8XAC1_V1_2_c6.pdb #118
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XAV5_V1_5_c6.pdb
Chain information for Q8XAV5_V1_5_c6.pdb #119
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XBF5_V1_5_c6.pdb
Chain information for Q8XBF5_V1_5_c6.pdb #120
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XBG4_V1_3_c6.pdb
Chain information for Q8XBG4_V1_3_c6.pdb #121
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XBI2_V1_2_c6.pdb
Chain information for Q8XBI2_V1_2_c6.pdb #122
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XBX4_V1_4_c6.pdb
Chain information for Q8XBX4_V1_4_c6.pdb #123
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XCK1_V1_3_c6.pdb
Chain information for Q8XCK1_V1_3_c6.pdb #124
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XD46_V1_5_c6.pdb
Chain information for Q8XD46_V1_5_c6.pdb #125
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XDA0_V1_4_c6.pdb
Chain information for Q8XDA0_V1_4_c6.pdb #126
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q8XDK1_V1_3_c6.pdb
Chain information for Q8XDK1_V1_3_c6.pdb #127
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9BQ13_V1_5_c6.pdb
Chain information for Q9BQ13_V1_5_c6.pdb #128
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9BRQ5_V1_5_c6.pdb
Chain information for Q9BRQ5_V1_5_c6.pdb #129
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9BW62_V1_3_c6.pdb
Chain information for Q9BW62_V1_3_c6.pdb #130
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9H078_V1_3_c6.pdb
Chain information for Q9H078_V1_3_c6.pdb #131
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9NTQ9_V1_3_c6.pdb
Chain information for Q9NTQ9_V1_3_c6.pdb #132
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9NVI7_V1_2_c6.pdb
Chain information for Q9NVI7_V1_2_c6.pdb #133
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9UBP0_V1_4_c6.pdb
Chain information for Q9UBP0_V1_4_c6.pdb #134
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9UQ90_V1_3_c6.pdb
Chain information for Q9UQ90_V1_3_c6.pdb #135
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y4W6_V1_3_c6.pdb
Chain information for Q9Y4W6_V1_3_c6.pdb #136
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y5J7_V1_1_c6.pdb
Chain information for Q9Y5J7_V1_1_c6.pdb #137
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y5J9_V1_1_c6.pdb
Chain information for Q9Y5J9_V1_1_c6.pdb #138
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y230_V1_3_c6.pdb
Chain information for Q9Y230_V1_3_c6.pdb #139
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y265_V1_3_c6.pdb
Chain information for Q9Y265_V1_3_c6.pdb #140
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q9Y603_V1_5_c6.pdb
Chain information for Q9Y603_V1_5_c6.pdb #141
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q68DU8_V1_3_c6.pdb
Chain information for Q68DU8_V1_3_c6.pdb #142
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q96BY9_V1_2_c6.pdb
Chain information for Q96BY9_V1_2_c6.pdb #143
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q96KN9_V1_5_c6.pdb
Chain information for Q96KN9_V1_5_c6.pdb #144
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q96RR1_V1_3_c6.pdb
Chain information for Q96RR1_V1_3_c6.pdb #145
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q96SN7_V1_3_c6.pdb
Chain information for Q96SN7_V1_3_c6.pdb #146
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q96TA2_V1_4_c6.pdb
Chain information for Q96TA2_V1_4_c6.pdb #147
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q03148_V1_5_c6.pdb
Chain information for Q03148_V1_5_c6.pdb #148
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q03900_V1_3_c6.pdb
Chain information for Q03900_V1_3_c6.pdb #149
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q03940_V1_3_c6.pdb
Chain information for Q03940_V1_3_c6.pdb #150
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q05648_V1_3_c6.pdb
Chain information for Q05648_V1_3_c6.pdb #151
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q12330_V1_1_c6.pdb
Chain information for Q12330_V1_1_c6.pdb #152
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q12359_V1_5_c6.pdb
Chain information for Q12359_V1_5_c6.pdb #153
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q12464_V1_5_c6.pdb
Chain information for Q12464_V1_5_c6.pdb #154
---
Chain | Description
A B C D E F | No description available
> open /Users/martinpacesa/Downloads/ananas_C6/Q99928_V1_3_c6.pdb
Chain information for Q99928_V1_3_c6.pdb #155
---
Chain | Description
A B C D E F | No description available
> hide #21,87,122#!2,4-20,22-86,88-121,123-155 atoms
[Repeated 1 time(s)]
> show #21,87,122#!2,4-20,22-86,88-121,123-155 cartoons
> ui tool show Matchmaker
> matchmaker #21,87,122#!3-20,22-86,88-121,123-155 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with C9JCN9_V1_2_c6.pdb, chain A
(#21), sequence alignment score = 60.6
RMSD between 6 pruned atom pairs is 1.076 angstroms; (across all 46 pairs:
6.301)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8N228_V1_4_c6.pdb, chain A
(#87), sequence alignment score = 60.3
RMSD between 3 pruned atom pairs is 0.482 angstroms; (across all 70 pairs:
24.296)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XBI2_V1_2_c6.pdb, chain A
(#122), sequence alignment score = 39.4
RMSD between 9 pruned atom pairs is 1.214 angstroms; (across all 80 pairs:
13.477)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with 6pxi, chain E (#3), sequence
alignment score = 1607
RMSD between 297 pruned atom pairs is 0.821 angstroms; (across all 344 pairs:
2.250)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JCX0_V1_3_c6.pdb, chain
A (#4), sequence alignment score = 4.7
Fewer than 3 residues aligned; cannot match P0A6H6_V1_3_c6.pdb, chain A with
A0A0H3JCX0_V1_3_c6.pdb, chain A
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JDD9_V1_3_c6.pdb, chain
A (#5), sequence alignment score = 175.9
RMSD between 8 pruned atom pairs is 1.250 angstroms; (across all 286 pairs:
23.960)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JDT4_V1_4_c6.pdb, chain
A (#6), sequence alignment score = 2.9
RMSD between 3 pruned atom pairs is 0.440 angstroms; (across all 3 pairs:
0.440)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JDX9_V1_3_c6.pdb, chain
A (#7), sequence alignment score = 145.7
RMSD between 6 pruned atom pairs is 1.068 angstroms; (across all 289 pairs:
26.460)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JE69_V1_3_c6.pdb, chain
A (#8), sequence alignment score = 4.2
RMSD between 10 pruned atom pairs is 1.092 angstroms; (across all 23 pairs:
13.224)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JE71_V1_2_c6.pdb, chain
A (#9), sequence alignment score = 34.2
RMSD between 4 pruned atom pairs is 0.696 angstroms; (across all 64 pairs:
19.963)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JG53_V1_3_c6.pdb, chain
A (#10), sequence alignment score = 119.4
RMSD between 9 pruned atom pairs is 1.207 angstroms; (across all 270 pairs:
28.525)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JGT1_V1_4_c6.pdb, chain
A (#11), sequence alignment score = 67.2
RMSD between 11 pruned atom pairs is 0.754 angstroms; (across all 202 pairs:
37.382)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JGY4_V1_3_c6.pdb, chain
A (#12), sequence alignment score = 34.5
RMSD between 8 pruned atom pairs is 1.263 angstroms; (across all 52 pairs:
16.021)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JJ52_V1_4_c6.pdb, chain
A (#13), sequence alignment score = 73.5
RMSD between 7 pruned atom pairs is 1.471 angstroms; (across all 99 pairs:
19.590)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JK24_V1_2_c6.pdb, chain
A (#14), sequence alignment score = 0.6
RMSD between 6 pruned atom pairs is 0.393 angstroms; (across all 10 pairs:
11.804)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JRB9_V1_2_c6.pdb, chain
A (#15), sequence alignment score = 50.4
RMSD between 16 pruned atom pairs is 0.323 angstroms; (across all 67 pairs:
20.826)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A120LVA1_V1_4_c6.pdb, chain
A (#16), sequence alignment score = 55.4
RMSD between 22 pruned atom pairs is 1.080 angstroms; (across all 262 pairs:
22.121)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A152UUM3_V1_4_c6.pdb, chain
A (#17), sequence alignment score = 146.9
RMSD between 91 pruned atom pairs is 1.308 angstroms; (across all 232 pairs:
14.392)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A7UQW2_V1_3_c6.pdb, chain A
(#18), sequence alignment score = 9.9
RMSD between 3 pruned atom pairs is 0.266 angstroms; (across all 3 pairs:
0.266)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A8B1I8_V1_2_c6.pdb, chain A
(#19), sequence alignment score = 18.9
RMSD between 7 pruned atom pairs is 0.710 angstroms; (across all 65 pairs:
19.648)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A8MWD9_V1_3_c6.pdb, chain A
(#20), sequence alignment score = 4.7
Fewer than 3 residues aligned; cannot match P0A6H6_V1_3_c6.pdb, chain A with
A8MWD9_V1_3_c6.pdb, chain A
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O14818_V1_3_c6.pdb, chain A
(#22), sequence alignment score = 66.5
RMSD between 4 pruned atom pairs is 0.915 angstroms; (across all 159 pairs:
25.453)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O15381_V1_5_c6.pdb, chain A
(#23), sequence alignment score = 153.8
RMSD between 8 pruned atom pairs is 1.209 angstroms; (across all 169 pairs:
27.700)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O60220_V1_1_c6.pdb, chain A
(#24), sequence alignment score = 62
RMSD between 20 pruned atom pairs is 0.632 angstroms; (across all 60 pairs:
24.201)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O74700_V1_2_c6.pdb, chain A
(#25), sequence alignment score = 53.5
RMSD between 4 pruned atom pairs is 1.350 angstroms; (across all 53 pairs:
24.933)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O75351_V1_3_c6.pdb, chain A
(#26), sequence alignment score = 173.3
RMSD between 6 pruned atom pairs is 1.434 angstroms; (across all 227 pairs:
29.316)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O75712_V1_2_c6.pdb, chain A
(#27), sequence alignment score = 58.4
RMSD between 6 pruned atom pairs is 1.218 angstroms; (across all 103 pairs:
22.535)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O76031_V1_2_c6.pdb, chain A
(#28), sequence alignment score = 456.8
RMSD between 179 pruned atom pairs is 0.820 angstroms; (across all 241 pairs:
3.731)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O82884_V1_3_c6.pdb, chain A
(#29), sequence alignment score = 54.1
RMSD between 5 pruned atom pairs is 1.219 angstroms; (across all 201 pairs:
34.689)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O95377_V1_3_c6.pdb, chain A
(#30), sequence alignment score = 97
RMSD between 5 pruned atom pairs is 1.382 angstroms; (across all 157 pairs:
33.235)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O95452_V1_4_c6.pdb, chain A
(#31), sequence alignment score = 72.8
RMSD between 4 pruned atom pairs is 1.588 angstroms; (across all 138 pairs:
28.548)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6A1_V1_3_c6.pdb, chain A
(#32), sequence alignment score = 105.3
RMSD between 7 pruned atom pairs is 1.509 angstroms; (across all 290 pairs:
33.192)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6H3_V1_3_c6.pdb, chain A
(#33), sequence alignment score = 517.5
RMSD between 205 pruned atom pairs is 0.891 angstroms; (across all 249 pairs:
7.259)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6H6_V1_3_c6.pdb, chain A
(#34), sequence alignment score = 1823.9
RMSD between 356 pruned atom pairs is 0.000 angstroms; (across all 356 pairs:
0.000)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6X5_V1_4_c6.pdb, chain A
(#35), sequence alignment score = 19.8
RMSD between 12 pruned atom pairs is 1.370 angstroms; (across all 13 pairs:
1.518)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A9K2_V1_4_c6.pdb, chain A
(#36), sequence alignment score = 76.3
RMSD between 5 pruned atom pairs is 1.065 angstroms; (across all 151 pairs:
21.749)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A813_V1_2_c6.pdb, chain A
(#37), sequence alignment score = 199.4
RMSD between 86 pruned atom pairs is 1.123 angstroms; (across all 214 pairs:
11.797)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0AAZ6_V1_3_c6.pdb, chain A
(#38), sequence alignment score = 171.5
RMSD between 43 pruned atom pairs is 1.177 angstroms; (across all 192 pairs:
26.753)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0ABB6_V1_1_c6.pdb, chain A
(#39), sequence alignment score = 71.7
RMSD between 12 pruned atom pairs is 1.330 angstroms; (across all 174 pairs:
22.622)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0AC06_V1_3_c6.pdb, chain A
(#40), sequence alignment score = 105.1
RMSD between 8 pruned atom pairs is 1.566 angstroms; (across all 128 pairs:
18.683)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0AC99_V1_5_c6.pdb, chain A
(#41), sequence alignment score = 70.8
RMSD between 14 pruned atom pairs is 0.947 angstroms; (across all 151 pairs:
28.041)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0ACY5_V1_3_c6.pdb, chain A
(#42), sequence alignment score = 153.3
RMSD between 37 pruned atom pairs is 1.340 angstroms; (across all 333 pairs:
25.885)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0AFV1_V1_4_c6.pdb, chain A
(#43), sequence alignment score = 121.9
RMSD between 22 pruned atom pairs is 1.052 angstroms; (across all 263 pairs:
49.757)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P06576_V1_3_c6.pdb, chain A
(#44), sequence alignment score = 98.8
RMSD between 25 pruned atom pairs is 1.126 angstroms; (across all 284 pairs:
29.842)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P23639_V1_3_c6.pdb, chain A
(#45), sequence alignment score = 66.7
RMSD between 5 pruned atom pairs is 1.322 angstroms; (across all 156 pairs:
28.441)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P25613_V1_4_c6.pdb, chain A
(#46), sequence alignment score = 48.1
RMSD between 5 pruned atom pairs is 0.944 angstroms; (across all 79 pairs:
13.369)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P32794_V1_4_c6.pdb, chain A
(#47), sequence alignment score = 169.2
RMSD between 16 pruned atom pairs is 0.619 angstroms; (across all 266 pairs:
29.407)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P32795_V1_5_c6.pdb, chain A
(#48), sequence alignment score = 203.4
RMSD between 4 pruned atom pairs is 0.790 angstroms; (across all 303 pairs:
37.098)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P32830_V1_5_c6.pdb, chain A
(#49), sequence alignment score = 54.6
RMSD between 13 pruned atom pairs is 0.554 angstroms; (across all 44 pairs:
24.299)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P32907_V1_1_c6.pdb, chain A
(#50), sequence alignment score = 54.6
RMSD between 11 pruned atom pairs is 1.519 angstroms; (across all 85 pairs:
14.200)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P35249_V1_3_c6.pdb, chain A
(#51), sequence alignment score = 158.8
RMSD between 44 pruned atom pairs is 1.089 angstroms; (across all 210 pairs:
29.593)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P35250_V1_4_c6.pdb, chain A
(#52), sequence alignment score = 154.8
RMSD between 9 pruned atom pairs is 0.802 angstroms; (across all 255 pairs:
24.712)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P36775_V1_4_c6.pdb, chain A
(#53), sequence alignment score = 168.5
RMSD between 87 pruned atom pairs is 1.171 angstroms; (across all 233 pairs:
14.443)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P36776_V1_4_c6.pdb, chain A
(#54), sequence alignment score = 142.8
RMSD between 91 pruned atom pairs is 1.255 angstroms; (across all 228 pairs:
17.819)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P38323_V1_2_c6.pdb, chain A
(#55), sequence alignment score = 472.4
RMSD between 211 pruned atom pairs is 0.824 angstroms; (across all 258 pairs:
8.999)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P38629_V1_3_c6.pdb, chain A
(#56), sequence alignment score = 193.5
RMSD between 44 pruned atom pairs is 0.998 angstroms; (across all 214 pairs:
30.464)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P38911_V1_5_c6.pdb, chain A
(#57), sequence alignment score = 1.7
Fewer than 3 residues aligned; cannot match P0A6H6_V1_3_c6.pdb, chain A with
P38911_V1_5_c6.pdb, chain A
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P39925_V1_3_c6.pdb, chain A
(#58), sequence alignment score = 237.4
RMSD between 7 pruned atom pairs is 1.489 angstroms; (across all 304 pairs:
36.454)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40046_V1_1_c6.pdb, chain A
(#59), sequence alignment score = 62.5
RMSD between 9 pruned atom pairs is 1.244 angstroms; (across all 79 pairs:
25.734)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40089_V1_1_c6.pdb, chain A
(#60), sequence alignment score = 7.1
RMSD between 7 pruned atom pairs is 0.474 angstroms; (across all 8 pairs:
2.176)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40339_V1_4_c6.pdb, chain A
(#61), sequence alignment score = 155.8
RMSD between 42 pruned atom pairs is 1.236 angstroms; (across all 230 pairs:
28.616)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40341_V1_3_c6.pdb, chain A
(#62), sequence alignment score = 231.4
RMSD between 5 pruned atom pairs is 1.295 angstroms; (across all 294 pairs:
32.104)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40348_V1_5_c6.pdb, chain A
(#63), sequence alignment score = 157.2
RMSD between 37 pruned atom pairs is 1.031 angstroms; (across all 190 pairs:
28.467)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P40937_V1_3_c6.pdb, chain A
(#64), sequence alignment score = 183.1
RMSD between 44 pruned atom pairs is 1.072 angstroms; (across all 220 pairs:
31.358)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P41212_V1_4_c6.pdb, chain A
(#65), sequence alignment score = 43.7
RMSD between 6 pruned atom pairs is 1.469 angstroms; (across all 57 pairs:
10.709)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P43321_V1_5_c6.pdb, chain A
(#66), sequence alignment score = 6.3
RMSD between 7 pruned atom pairs is 0.413 angstroms; (across all 7 pairs:
0.413)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P43545_V1_4_c6.pdb, chain A
(#67), sequence alignment score = 110.1
RMSD between 16 pruned atom pairs is 1.215 angstroms; (across all 181 pairs:
28.293)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P53299_V1_3_c6.pdb, chain A
(#68), sequence alignment score = 62.9
RMSD between 23 pruned atom pairs is 0.409 angstroms; (across all 69 pairs:
16.213)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P53824_V1_4_c6.pdb, chain A
(#69), sequence alignment score = 101.2
RMSD between 16 pruned atom pairs is 1.217 angstroms; (across all 185 pairs:
28.022)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P57744_V1_4_c6.pdb, chain A
(#70), sequence alignment score = 38.2
RMSD between 15 pruned atom pairs is 0.433 angstroms; (across all 32 pairs:
16.168)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P62072_V1_3_c6.pdb, chain A
(#71), sequence alignment score = 71.7
RMSD between 17 pruned atom pairs is 0.460 angstroms; (across all 67 pairs:
15.467)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P62304_V1_4_c6.pdb, chain A
(#72), sequence alignment score = 8.2
RMSD between 9 pruned atom pairs is 0.897 angstroms; (across all 12 pairs:
4.409)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P63145_V1_5_c6.pdb, chain A
(#73), sequence alignment score = 85.3
RMSD between 6 pruned atom pairs is 1.468 angstroms; (across all 143 pairs:
28.552)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P64425_V1_3_c6.pdb, chain A
(#74), sequence alignment score = 105.3
RMSD between 17 pruned atom pairs is 0.645 angstroms; (across all 152 pairs:
27.009)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P64605_V1_5_c6.pdb, chain A
(#75), sequence alignment score = 20.8
RMSD between 11 pruned atom pairs is 0.409 angstroms; (across all 13 pairs:
1.317)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P81413_V1_2_c6.pdb, chain A
(#76), sequence alignment score = 145
RMSD between 49 pruned atom pairs is 1.134 angstroms; (across all 218 pairs:
18.866)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5T2N8_V1_5_c6.pdb, chain A
(#77), sequence alignment score = 151.4
RMSD between 70 pruned atom pairs is 0.976 angstroms; (across all 220 pairs:
17.856)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5T9A4_V1_4_c6.pdb, chain A
(#78), sequence alignment score = 166.6
RMSD between 73 pruned atom pairs is 0.986 angstroms; (across all 213 pairs:
14.054)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5T442_V1_5_c6.pdb, chain A
(#79), sequence alignment score = 80.9
RMSD between 6 pruned atom pairs is 1.511 angstroms; (across all 132 pairs:
33.036)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5TDP6_V1_3_c6.pdb, chain A
(#80), sequence alignment score = 42.5
RMSD between 8 pruned atom pairs is 1.280 angstroms; (across all 105 pairs:
22.060)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q6PEY0_V1_4_c6.pdb, chain A
(#81), sequence alignment score = 87.9
RMSD between 16 pruned atom pairs is 0.423 angstroms; (across all 142 pairs:
34.392)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q6ZWB6_V1_5_c6.pdb, chain A
(#82), sequence alignment score = 29.6
RMSD between 6 pruned atom pairs is 1.138 angstroms; (across all 80 pairs:
15.330)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q7DB56_V1_5_c6.pdb, chain A
(#83), sequence alignment score = 88.8
RMSD between 5 pruned atom pairs is 1.469 angstroms; (across all 168 pairs:
34.070)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q7DB71_V1_3_c6.pdb, chain A
(#84), sequence alignment score = 109.1
RMSD between 9 pruned atom pairs is 1.323 angstroms; (across all 256 pairs:
26.968)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8IYT4_V1_4_c6.pdb, chain A
(#85), sequence alignment score = 156.7
RMSD between 8 pruned atom pairs is 1.353 angstroms; (across all 195 pairs:
30.068)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8N144_V1_1_c6.pdb, chain A
(#86), sequence alignment score = 52.2
RMSD between 13 pruned atom pairs is 1.300 angstroms; (across all 129 pairs:
27.936)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH07_V1_1_c6.pdb, chain A
(#88), sequence alignment score = 7.5
RMSD between 4 pruned atom pairs is 1.344 angstroms; (across all 15 pairs:
7.208)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH09_V1_3_c6.pdb, chain A
(#89), sequence alignment score = 146.9
RMSD between 7 pruned atom pairs is 1.535 angstroms; (across all 257 pairs:
23.421)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH14_V1_4_c6.pdb, chain A
(#90), sequence alignment score = 134.6
RMSD between 20 pruned atom pairs is 1.350 angstroms; (across all 245 pairs:
26.707)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH16_V1_3_c6.pdb, chain A
(#91), sequence alignment score = 137.1
RMSD between 23 pruned atom pairs is 1.286 angstroms; (across all 270 pairs:
28.117)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZF9_V1_5_c6.pdb, chain A
(#92), sequence alignment score = 99
RMSD between 11 pruned atom pairs is 1.232 angstroms; (across all 175 pairs:
30.016)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZT8_V1_3_c6.pdb, chain A
(#93), sequence alignment score = 83.5
RMSD between 16 pruned atom pairs is 1.100 angstroms; (across all 162 pairs:
22.551)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZU3_V1_3_c6.pdb, chain A
(#94), sequence alignment score = 59.7
RMSD between 7 pruned atom pairs is 1.265 angstroms; (across all 184 pairs:
24.476)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZX8_V1_3_c6.pdb, chain A
(#95), sequence alignment score = 269.5
RMSD between 73 pruned atom pairs is 1.269 angstroms; (across all 242 pairs:
19.025)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U0N8_V1_1_c6.pdb, chain A
(#96), sequence alignment score = 70.5
RMSD between 25 pruned atom pairs is 1.325 angstroms; (across all 257 pairs:
30.358)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U0Q6_V1_4_c6.pdb, chain A
(#97), sequence alignment score = 104.3
RMSD between 13 pruned atom pairs is 0.936 angstroms; (across all 214 pairs:
27.760)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U3F1_V1_5_c6.pdb, chain A
(#98), sequence alignment score = 180.4
RMSD between 19 pruned atom pairs is 1.148 angstroms; (across all 249 pairs:
30.057)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U3N9_V1_3_c6.pdb, chain A
(#99), sequence alignment score = 175
RMSD between 22 pruned atom pairs is 0.737 angstroms; (across all 247 pairs:
29.116)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U3Q1_V1_3_c6.pdb, chain A
(#100), sequence alignment score = 195.9
RMSD between 13 pruned atom pairs is 1.421 angstroms; (across all 248 pairs:
28.378)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U4C6_V1_3_c6.pdb, chain A
(#101), sequence alignment score = 66.3
RMSD between 6 pruned atom pairs is 1.414 angstroms; (across all 127 pairs:
19.808)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U4I5_V1_5_c6.pdb, chain A
(#102), sequence alignment score = 53.3
RMSD between 6 pruned atom pairs is 1.251 angstroms; (across all 131 pairs:
27.195)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U186_V1_3_c6.pdb, chain A
(#103), sequence alignment score = 93.4
RMSD between 6 pruned atom pairs is 1.465 angstroms; (across all 162 pairs:
25.125)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U187_V1_3_c6.pdb, chain A
(#104), sequence alignment score = 73.4
RMSD between 4 pruned atom pairs is 0.759 angstroms; (across all 144 pairs:
24.307)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8U211_V1_3_c6.pdb, chain A
(#105), sequence alignment score = 37.4
RMSD between 17 pruned atom pairs is 0.639 angstroms; (across all 163 pairs:
23.918)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X5E6_V1_4_c6.pdb, chain A
(#106), sequence alignment score = 54
RMSD between 6 pruned atom pairs is 1.057 angstroms; (across all 79 pairs:
14.736)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X6E2_V1_3_c6.pdb, chain A
(#107), sequence alignment score = 82.8
RMSD between 13 pruned atom pairs is 1.203 angstroms; (across all 244 pairs:
28.534)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X6F1_V1_3_c6.pdb, chain A
(#108), sequence alignment score = 97.3
RMSD between 13 pruned atom pairs is 1.211 angstroms; (across all 150 pairs:
27.471)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X7D4_V1_3_c6.pdb, chain A
(#109), sequence alignment score = 145.2
RMSD between 31 pruned atom pairs is 1.248 angstroms; (across all 266 pairs:
19.091)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X7G9_V1_5_c6.pdb, chain A
(#110), sequence alignment score = 130.2
RMSD between 64 pruned atom pairs is 0.984 angstroms; (across all 191 pairs:
17.497)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X9L0_V1_3_c6.pdb, chain A
(#111), sequence alignment score = 226.9
RMSD between 6 pruned atom pairs is 0.890 angstroms; (across all 302 pairs:
34.659)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X613_V1_5_c6.pdb, chain A
(#112), sequence alignment score = 109.7
RMSD between 74 pruned atom pairs is 1.255 angstroms; (across all 216 pairs:
17.680)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X755_V1_3_c6.pdb, chain A
(#113), sequence alignment score = 12.1
RMSD between 7 pruned atom pairs is 0.346 angstroms; (across all 8 pairs:
1.256)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X860_V1_3_c6.pdb, chain A
(#114), sequence alignment score = 16
RMSD between 14 pruned atom pairs is 1.004 angstroms; (across all 33 pairs:
12.432)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X871_V1_4_c6.pdb, chain A
(#115), sequence alignment score = 54.8
RMSD between 5 pruned atom pairs is 1.375 angstroms; (across all 81 pairs:
13.670)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X905_V1_3_c6.pdb, chain A
(#116), sequence alignment score = 69.2
RMSD between 19 pruned atom pairs is 0.540 angstroms; (across all 259 pairs:
50.461)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X975_V1_3_c6.pdb, chain A
(#117), sequence alignment score = 52.8
RMSD between 15 pruned atom pairs is 1.220 angstroms; (across all 212 pairs:
28.678)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XAC1_V1_2_c6.pdb, chain A
(#118), sequence alignment score = 36.3
RMSD between 13 pruned atom pairs is 0.902 angstroms; (across all 53 pairs:
12.454)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XAV5_V1_5_c6.pdb, chain A
(#119), sequence alignment score = 156
RMSD between 6 pruned atom pairs is 1.457 angstroms; (across all 240 pairs:
26.021)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XBF5_V1_5_c6.pdb, chain A
(#120), sequence alignment score = 37.5
RMSD between 11 pruned atom pairs is 0.317 angstroms; (across all 72 pairs:
24.945)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XBG4_V1_3_c6.pdb, chain A
(#121), sequence alignment score = 23.3
RMSD between 9 pruned atom pairs is 0.304 angstroms; (across all 20 pairs:
12.860)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XBX4_V1_4_c6.pdb, chain A
(#123), sequence alignment score = 120
RMSD between 7 pruned atom pairs is 0.208 angstroms; (across all 302 pairs:
40.851)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XCK1_V1_3_c6.pdb, chain A
(#124), sequence alignment score = 68.9
RMSD between 17 pruned atom pairs is 0.642 angstroms; (across all 212 pairs:
39.087)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XD46_V1_5_c6.pdb, chain A
(#125), sequence alignment score = 151.1
RMSD between 57 pruned atom pairs is 1.078 angstroms; (across all 230 pairs:
20.173)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XDA0_V1_4_c6.pdb, chain A
(#126), sequence alignment score = 88.5
RMSD between 9 pruned atom pairs is 1.492 angstroms; (across all 294 pairs:
32.809)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8XDK1_V1_3_c6.pdb, chain A
(#127), sequence alignment score = 125.1
RMSD between 16 pruned atom pairs is 1.163 angstroms; (across all 285 pairs:
50.205)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9BQ13_V1_5_c6.pdb, chain A
(#128), sequence alignment score = 69.3
RMSD between 13 pruned atom pairs is 1.071 angstroms; (across all 161 pairs:
42.896)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9BRQ5_V1_5_c6.pdb, chain A
(#129), sequence alignment score = 58.1
RMSD between 7 pruned atom pairs is 1.423 angstroms; (across all 130 pairs:
25.249)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9BW62_V1_3_c6.pdb, chain A
(#130), sequence alignment score = 156.7
RMSD between 81 pruned atom pairs is 1.021 angstroms; (across all 231 pairs:
19.597)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9H078_V1_3_c6.pdb, chain A
(#131), sequence alignment score = 215.6
RMSD between 91 pruned atom pairs is 1.159 angstroms; (across all 280 pairs:
27.008)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9NTQ9_V1_3_c6.pdb, chain A
(#132), sequence alignment score = 84.4
RMSD between 10 pruned atom pairs is 0.388 angstroms; (across all 153 pairs:
31.637)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9NVI7_V1_2_c6.pdb, chain A
(#133), sequence alignment score = 176.6
RMSD between 68 pruned atom pairs is 0.956 angstroms; (across all 212 pairs:
18.727)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9UBP0_V1_4_c6.pdb, chain A
(#134), sequence alignment score = 161.1
RMSD between 76 pruned atom pairs is 1.121 angstroms; (across all 208 pairs:
16.667)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9UQ90_V1_3_c6.pdb, chain B
(#135), sequence alignment score = 238.1
RMSD between 6 pruned atom pairs is 1.307 angstroms; (across all 316 pairs:
33.251)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y4W6_V1_3_c6.pdb, chain A
(#136), sequence alignment score = 224.2
RMSD between 6 pruned atom pairs is 1.407 angstroms; (across all 312 pairs:
29.824)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y5J7_V1_1_c6.pdb, chain A
(#137), sequence alignment score = 56.5
RMSD between 4 pruned atom pairs is 1.640 angstroms; (across all 57 pairs:
25.528)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y5J9_V1_1_c6.pdb, chain A
(#138), sequence alignment score = 73.5
RMSD between 23 pruned atom pairs is 0.726 angstroms; (across all 57 pairs:
18.963)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y230_V1_3_c6.pdb, chain A
(#139), sequence alignment score = 189.3
RMSD between 77 pruned atom pairs is 1.175 angstroms; (across all 272 pairs:
16.520)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y265_V1_3_c6.pdb, chain A
(#140), sequence alignment score = 205.3
RMSD between 85 pruned atom pairs is 1.268 angstroms; (across all 277 pairs:
19.371)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y603_V1_5_c6.pdb, chain A
(#141), sequence alignment score = 46.7
RMSD between 7 pruned atom pairs is 1.566 angstroms; (across all 59 pairs:
22.396)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q68DU8_V1_3_c6.pdb, chain A
(#142), sequence alignment score = 30.1
RMSD between 5 pruned atom pairs is 1.271 angstroms; (across all 38 pairs:
13.024)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96BY9_V1_2_c6.pdb, chain A
(#143), sequence alignment score = 5.4
Fewer than 3 residues aligned; cannot match P0A6H6_V1_3_c6.pdb, chain A with
Q96BY9_V1_2_c6.pdb, chain A
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96KN9_V1_5_c6.pdb, chain A
(#144), sequence alignment score = 102.2
RMSD between 4 pruned atom pairs is 0.684 angstroms; (across all 149 pairs:
28.097)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96RR1_V1_3_c6.pdb, chain A
(#145), sequence alignment score = 99.3
RMSD between 23 pruned atom pairs is 1.416 angstroms; (across all 189 pairs:
20.726)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96SN7_V1_3_c6.pdb, chain A
(#146), sequence alignment score = 87.1
RMSD between 8 pruned atom pairs is 1.317 angstroms; (across all 158 pairs:
24.314)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96TA2_V1_4_c6.pdb, chain A
(#147), sequence alignment score = 220
RMSD between 7 pruned atom pairs is 1.291 angstroms; (across all 298 pairs:
29.751)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q03148_V1_5_c6.pdb, chain A
(#148), sequence alignment score = 98.1
RMSD between 13 pruned atom pairs is 1.245 angstroms; (across all 176 pairs:
27.729)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q03900_V1_3_c6.pdb, chain A
(#149), sequence alignment score = 41
RMSD between 5 pruned atom pairs is 1.324 angstroms; (across all 118 pairs:
22.396)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q03940_V1_3_c6.pdb, chain A
(#150), sequence alignment score = 211.7
RMSD between 74 pruned atom pairs is 1.161 angstroms; (across all 267 pairs:
17.272)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q05648_V1_3_c6.pdb, chain A
(#151), sequence alignment score = 103.1
RMSD between 15 pruned atom pairs is 0.675 angstroms; (across all 114 pairs:
26.129)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q12330_V1_1_c6.pdb, chain A
(#152), sequence alignment score = 13.2
RMSD between 11 pruned atom pairs is 1.259 angstroms; (across all 14 pairs:
1.862)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q12359_V1_5_c6.pdb, chain A
(#153), sequence alignment score = 71.7
RMSD between 14 pruned atom pairs is 0.568 angstroms; (across all 133 pairs:
23.989)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q12464_V1_5_c6.pdb, chain A
(#154), sequence alignment score = 229.5
RMSD between 74 pruned atom pairs is 1.313 angstroms; (across all 247 pairs:
22.122)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q99928_V1_3_c6.pdb, chain A
(#155), sequence alignment score = 64.3
RMSD between 7 pruned atom pairs is 1.121 angstroms; (across all 100 pairs:
25.211)
> hide #21,87,122#!4-20,22-86,88-121,123-155 target m
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> save /Users/martinpacesa/Downloads/C6.cxs
——— End of log from Tue Aug 23 13:26:26 2022 ———
opened ChimeraX session
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> save /Users/martinpacesa/Downloads/chaperone.cxs
Traceback (most recent call last):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 249, in discovery
if hasattr(sm, 'include_state') and not sm.include_state(value):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 543, in include_state
return bool(self.group_map)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 536, in group_map
f = c_function('set_pbgroup_py_instance',
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molc.py", line 31, in c_function
f = getattr(self._c_lib, func_name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 387, in __getattr__
func = self.__getitem__(name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
Populating font family aliases took 287 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 249, in discovery
if hasattr(sm, 'include_state') and not sm.include_state(value):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 543, in include_state
return bool(self.group_map)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 536, in group_map
f = c_function('set_pbgroup_py_instance',
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molc.py", line 31, in c_function
f = getattr(self._c_lib, func_name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 387, in __getattr__
func = self.__getitem__(name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
See log for complete Python traceback.
> show #!1 models
> ui tool show Matchmaker
> matchmaker
> #87#!3,7,11,16,22-23,26,28-29,32-34,38,42,55,77-78,80-86,88-95,106,130-131,133,139-140,145,150
> to #2 ssFraction 1.0
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 1
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8N228_V1_4_c6.pdb, chain A
(#87), sequence alignment score = 292
RMSD between 9 pruned atom pairs is 0.579 angstroms; (across all 70 pairs:
20.742)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with 6pxi, chain E (#3), sequence
alignment score = 1607
RMSD between 257 pruned atom pairs is 0.771 angstroms; (across all 338 pairs:
3.698)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JDX9_V1_3_c6.pdb, chain
A (#7), sequence alignment score = 1070
RMSD between 8 pruned atom pairs is 1.267 angstroms; (across all 268 pairs:
28.684)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A0H3JGT1_V1_4_c6.pdb, chain
A (#11), sequence alignment score = 704
RMSD between 13 pruned atom pairs is 0.883 angstroms; (across all 197 pairs:
40.899)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with A0A120LVA1_V1_4_c6.pdb, chain
A (#16), sequence alignment score = 845
RMSD between 26 pruned atom pairs is 1.223 angstroms; (across all 241 pairs:
21.470)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O14818_V1_3_c6.pdb, chain A
(#22), sequence alignment score = 691
RMSD between 8 pruned atom pairs is 1.461 angstroms; (across all 198 pairs:
28.781)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O15381_V1_5_c6.pdb, chain A
(#23), sequence alignment score = 731
RMSD between 19 pruned atom pairs is 0.477 angstroms; (across all 193 pairs:
20.732)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O75351_V1_3_c6.pdb, chain A
(#26), sequence alignment score = 836
RMSD between 5 pruned atom pairs is 1.712 angstroms; (across all 225 pairs:
33.784)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O76031_V1_2_c6.pdb, chain A
(#28), sequence alignment score = 1051
RMSD between 143 pruned atom pairs is 0.781 angstroms; (across all 240 pairs:
14.202)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with O82884_V1_3_c6.pdb, chain A
(#29), sequence alignment score = 835
RMSD between 4 pruned atom pairs is 1.271 angstroms; (across all 236 pairs:
37.250)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6A1_V1_3_c6.pdb, chain A
(#32), sequence alignment score = 1083
RMSD between 6 pruned atom pairs is 1.233 angstroms; (across all 291 pairs:
34.907)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6H3_V1_3_c6.pdb, chain A
(#33), sequence alignment score = 1066
RMSD between 149 pruned atom pairs is 0.933 angstroms; (across all 254 pairs:
23.437)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0A6H6_V1_3_c6.pdb, chain A
(#34), sequence alignment score = 1966
RMSD between 356 pruned atom pairs is 0.000 angstroms; (across all 356 pairs:
0.000)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0AAZ6_V1_3_c6.pdb, chain A
(#38), sequence alignment score = 681
RMSD between 37 pruned atom pairs is 1.090 angstroms; (across all 180 pairs:
23.994)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P0ACY5_V1_3_c6.pdb, chain A
(#42), sequence alignment score = 1067
RMSD between 11 pruned atom pairs is 1.485 angstroms; (across all 308 pairs:
29.441)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with P38323_V1_2_c6.pdb, chain A
(#55), sequence alignment score = 1125
RMSD between 122 pruned atom pairs is 0.737 angstroms; (across all 271 pairs:
21.844)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5T2N8_V1_5_c6.pdb, chain A
(#77), sequence alignment score = 899
RMSD between 20 pruned atom pairs is 1.043 angstroms; (across all 225 pairs:
22.783)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5T9A4_V1_4_c6.pdb, chain A
(#78), sequence alignment score = 905
RMSD between 33 pruned atom pairs is 0.853 angstroms; (across all 227 pairs:
21.229)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q5TDP6_V1_3_c6.pdb, chain A
(#80), sequence alignment score = 809
RMSD between 5 pruned atom pairs is 1.471 angstroms; (across all 226 pairs:
33.556)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q6PEY0_V1_4_c6.pdb, chain A
(#81), sequence alignment score = 644
RMSD between 4 pruned atom pairs is 1.322 angstroms; (across all 147 pairs:
29.230)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q6ZWB6_V1_5_c6.pdb, chain A
(#82), sequence alignment score = 279
RMSD between 5 pruned atom pairs is 0.360 angstroms; (across all 71 pairs:
19.487)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q7DB56_V1_5_c6.pdb, chain A
(#83), sequence alignment score = 730
RMSD between 10 pruned atom pairs is 1.150 angstroms; (across all 182 pairs:
27.767)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q7DB71_V1_3_c6.pdb, chain A
(#84), sequence alignment score = 899
RMSD between 8 pruned atom pairs is 1.567 angstroms; (across all 247 pairs:
24.997)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8IYT4_V1_4_c6.pdb, chain A
(#85), sequence alignment score = 766
RMSD between 49 pruned atom pairs is 1.102 angstroms; (across all 203 pairs:
19.867)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8N144_V1_1_c6.pdb, chain A
(#86), sequence alignment score = 541
RMSD between 6 pruned atom pairs is 1.292 angstroms; (across all 129 pairs:
26.450)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH07_V1_1_c6.pdb, chain A
(#88), sequence alignment score = 207
RMSD between 4 pruned atom pairs is 1.309 angstroms; (across all 101 pairs:
29.801)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH09_V1_3_c6.pdb, chain A
(#89), sequence alignment score = 1115
RMSD between 18 pruned atom pairs is 1.389 angstroms; (across all 291 pairs:
33.431)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH14_V1_4_c6.pdb, chain A
(#90), sequence alignment score = 1103
RMSD between 5 pruned atom pairs is 1.509 angstroms; (across all 290 pairs:
28.324)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TH16_V1_3_c6.pdb, chain A
(#91), sequence alignment score = 1094
RMSD between 5 pruned atom pairs is 1.059 angstroms; (across all 287 pairs:
34.407)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZF9_V1_5_c6.pdb, chain A
(#92), sequence alignment score = 844
RMSD between 21 pruned atom pairs is 0.962 angstroms; (across all 225 pairs:
48.552)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZT8_V1_3_c6.pdb, chain A
(#93), sequence alignment score = 653
RMSD between 5 pruned atom pairs is 1.065 angstroms; (across all 161 pairs:
26.124)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZU3_V1_3_c6.pdb, chain A
(#94), sequence alignment score = 648
RMSD between 4 pruned atom pairs is 1.050 angstroms; (across all 173 pairs:
20.768)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8TZX8_V1_3_c6.pdb, chain A
(#95), sequence alignment score = 1029
RMSD between 65 pruned atom pairs is 1.247 angstroms; (across all 246 pairs:
16.258)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q8X5E6_V1_4_c6.pdb, chain A
(#106), sequence alignment score = 761
RMSD between 25 pruned atom pairs is 0.933 angstroms; (across all 238 pairs:
25.647)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9BW62_V1_3_c6.pdb, chain A
(#130), sequence alignment score = 798
RMSD between 28 pruned atom pairs is 0.914 angstroms; (across all 225 pairs:
23.797)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9H078_V1_3_c6.pdb, chain A
(#131), sequence alignment score = 1186
RMSD between 37 pruned atom pairs is 0.996 angstroms; (across all 311 pairs:
30.997)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9NVI7_V1_2_c6.pdb, chain A
(#133), sequence alignment score = 859
RMSD between 61 pruned atom pairs is 0.948 angstroms; (across all 216 pairs:
17.984)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y230_V1_3_c6.pdb, chain A
(#139), sequence alignment score = 960
RMSD between 60 pruned atom pairs is 1.108 angstroms; (across all 252 pairs:
18.945)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q9Y265_V1_3_c6.pdb, chain A
(#140), sequence alignment score = 1052
RMSD between 58 pruned atom pairs is 1.207 angstroms; (across all 263 pairs:
18.754)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q96RR1_V1_3_c6.pdb, chain A
(#145), sequence alignment score = 998
RMSD between 4 pruned atom pairs is 1.434 angstroms; (across all 286 pairs:
24.512)
Matchmaker P0A6H6_V1_3_c6.pdb, chain A (#2) with Q03940_V1_3_c6.pdb, chain A
(#150), sequence alignment score = 1049
RMSD between 56 pruned atom pairs is 1.175 angstroms; (across all 258 pairs:
19.026)
> hide #!95 models
> show #!2 models
> hide #!2 models
> show #!7 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> close #7
> show #!11 models
> show #!1 models
> ui tool show "Fit in Map"
> fitmap #11 inMap #1
Fit molecule A0A0H3JGT1_V1_4_c6.pdb (#11) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 13986 atoms
average map value = 0.07337, steps = 212
shifted from previous position = 20.9
rotated from previous position = 51.9 degrees
atoms outside contour = 10843, contour level = 0.121
Position of A0A0H3JGT1_V1_4_c6.pdb (#11) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.09895427 -0.46009713 0.88233706 173.22991879
0.72026531 -0.64492444 -0.25551977 169.45450624
0.68660465 0.61023200 0.39521003 148.36748666
Axis 0.58621418 0.13253350 0.79924202
Axis point -5.67843467 80.98442237 0.00000000
Rotation angle (degrees) 132.40247922
Shift along axis 242.58976347
> fitmap #16 inMap #1
Fit molecule A0A120LVA1_V1_4_c6.pdb (#16) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 15738 atoms
average map value = 0.07467, steps = 168
shifted from previous position = 20.3
rotated from previous position = 37.3 degrees
atoms outside contour = 11823, contour level = 0.121
Position of A0A120LVA1_V1_4_c6.pdb (#16) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.08173635 0.82246056 -0.56291900 155.12639999
-0.08852029 -0.56856748 -0.81786012 169.57881207
-0.99271513 -0.01701915 0.11927708 188.04495682
Axis 0.62233144 0.33399346 -0.70792086
Axis point 202.14341305 92.43211500 0.00000000
Rotation angle (degrees) 139.95268575
Shift along axis 20.05730319
> hide #!11 models
> show #!11 models
> show #!16 models
> hide #!16 models
> fitmap #22 inMap #1
Fit molecule O14818_V1_3_c6.pdb (#22) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11124 atoms
average map value = 0.07995, steps = 104
shifted from previous position = 11.8
rotated from previous position = 15.9 degrees
atoms outside contour = 8333, contour level = 0.121
Position of O14818_V1_3_c6.pdb (#22) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.33081280 0.94330310 0.02724252 175.28807885
0.15663195 -0.02641698 -0.98730369 166.87792185
-0.93060696 0.33087975 -0.15649048 155.44066318
Axis 0.72851893 0.52937358 -0.43476864
Axis point 0.00000000 -76.03184036 168.46600699
Rotation angle (degrees) 115.21697403
Shift along axis 148.46072106
> fitmap #23 inMap #1
Fit molecule O15381_V1_5_c6.pdb (#23) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 9348 atoms
average map value = 0.08111, steps = 64
shifted from previous position = 6.96
rotated from previous position = 6.47 degrees
atoms outside contour = 6833, contour level = 0.121
Position of O15381_V1_5_c6.pdb (#23) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.18187394 0.25922287 -0.94853855 188.64538444
0.92466044 0.37327656 -0.07528404 151.15426206
0.33455186 -0.89076827 -0.30758241 167.31010327
Axis -0.49138552 -0.77315050 0.40097205
Axis point -31.01049231 0.00000000 163.71002538
Rotation angle (degrees) 123.92380407
Shift along axis -142.47592820
> select down
Nothing selected
> fitmap #26 inMap #1
Fit molecule O75351_V1_3_c6.pdb (#26) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 13086 atoms
average map value = 0.06956, steps = 364
shifted from previous position = 69.1
rotated from previous position = 51.1 degrees
atoms outside contour = 10336, contour level = 0.121
Position of O75351_V1_3_c6.pdb (#26) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.91070300 0.22802992 0.34441604 135.96646129
-0.16960544 -0.55384844 0.81516005 137.32432724
0.37663516 -0.80078353 -0.46571632 149.07017409
Axis -0.97085182 -0.01935711 -0.23889758
Axis point 0.00000000 97.19399258 20.85040659
Rotation angle (degrees) 123.67152398
Shift along axis -170.27399158
> fitmap #28 inMap #1
Fit molecule O76031_V1_2_c6.pdb (#28) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 12900 atoms
average map value = 0.07532, steps = 100
shifted from previous position = 4.63
rotated from previous position = 15.6 degrees
atoms outside contour = 10749, contour level = 0.121
Position of O76031_V1_2_c6.pdb (#28) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.84255575 -0.52190110 -0.13311292 179.69285540
-0.47538440 0.60440288 0.63930182 142.38359011
-0.25319849 0.60192724 -0.75734677 150.34546721
Axis -0.27871928 0.89553261 0.34689612
Axis point 113.97856687 -0.00000000 43.55180628
Rotation angle (degrees) 176.15560533
Shift along axis 129.57954331
> fitmap #77 inMap #1
Fit molecule Q5T2N8_V1_5_c6.pdb (#77) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11490 atoms
average map value = 0.08011, steps = 124
shifted from previous position = 19.7
rotated from previous position = 25.6 degrees
atoms outside contour = 9010, contour level = 0.121
Position of Q5T2N8_V1_5_c6.pdb (#77) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.29298943 -0.93999058 -0.17485679 194.83575491
0.77378877 -0.12569544 -0.62084748 163.92479262
0.56161208 -0.31720397 0.76418160 141.97266154
Axis 0.16066862 -0.38969195 0.90682180
Axis point 5.78038119 182.88550020 0.00000000
Rotation angle (degrees) 109.10204577
Shift along axis 96.16772276
> fitmap #32 inMap #1
Fit molecule P0A6A1_V1_3_c6.pdb (#32) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 20046 atoms
average map value = 0.06013, steps = 188
shifted from previous position = 47.8
rotated from previous position = 32.1 degrees
atoms outside contour = 16696, contour level = 0.121
Position of P0A6A1_V1_3_c6.pdb (#32) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.51887855 0.85356993 -0.04672720 175.01047130
-0.47896941 -0.24501627 0.84294444 130.52338025
0.70806310 0.45976669 0.53596757 140.04393444
Axis -0.24272209 -0.47811826 -0.84409059
Axis point 74.28173736 -9.41413506 0.00000000
Rotation angle (degrees) 127.87665377
Shift along axis -223.09428549
> fitmap #84 inMap #1
Fit molecule Q7DB71_V1_3_c6.pdb (#84) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 18174 atoms
average map value = 0.08199, steps = 216
shifted from previous position = 49.4
rotated from previous position = 49.9 degrees
atoms outside contour = 13391, contour level = 0.121
Position of Q7DB71_V1_3_c6.pdb (#84) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.97684877 -0.19073435 -0.09688594 157.66727794
0.09256341 -0.03146450 0.99520953 141.54328541
-0.19286911 -0.98113730 -0.01308103 145.65848032
Axis -0.98873998 0.04801910 0.14173009
Axis point 0.00000000 154.70631598 11.91978848
Rotation angle (degrees) 91.93973986
Shift along axis -128.45097003
> fitmap #32 inMap #1
Fit molecule P0A6A1_V1_3_c6.pdb (#32) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 20046 atoms
average map value = 0.06013, steps = 28
shifted from previous position = 0.0506
rotated from previous position = 0.033 degrees
atoms outside contour = 16689, contour level = 0.121
Position of P0A6A1_V1_3_c6.pdb (#32) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.51847540 0.85382279 -0.04658232 174.99299130
-0.47883226 -0.24476913 0.84309415 130.51877429
0.70845108 0.45942869 0.53574467 139.99545576
Axis -0.24297987 -0.47817158 -0.84398621
Axis point 74.25591419 -9.40733722 0.00000000
Rotation angle (degrees) 127.86114419
Shift along axis -223.08437750
> fitmap #34 inMap #1
Fit molecule P0A6H6_V1_3_c6.pdb (#34) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 16884 atoms
average map value = 0.08082, steps = 80
shifted from previous position = 7.57
rotated from previous position = 14.4 degrees
atoms outside contour = 13500, contour level = 0.121
Position of P0A6H6_V1_3_c6.pdb (#34) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.43791951 -0.76229407 -0.47658604 175.41686174
-0.12511542 0.57663856 -0.80736244 142.88025349
0.89026548 -0.29393150 -0.34789602 144.30184900
Axis 0.32228905 -0.85799519 0.39996752
Axis point 71.83402089 0.00000000 156.97706530
Rotation angle (degrees) 127.19923550
Shift along axis -8.33958502
> fitmap #38 inMap #1
Fit molecule P0AAZ6_V1_3_c6.pdb (#38) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 10092 atoms
average map value = 0.09247, steps = 104
shifted from previous position = 12.5
rotated from previous position = 22.1 degrees
atoms outside contour = 7456, contour level = 0.121
Position of P0AAZ6_V1_3_c6.pdb (#38) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.11738782 0.21576139 -0.96936429 163.84253798
-0.26145831 0.93496089 0.23976588 165.17258368
0.95804992 0.28159395 -0.05334041 171.82225431
Axis 0.02106088 -0.97047382 -0.24028526
Axis point 26.86462485 0.00000000 142.35840535
Rotation angle (degrees) 96.76997888
Shift along axis -198.13135517
> fitmap #42 inMap #1
Fit molecule P0ACY5_V1_3_c6.pdb (#42) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 24576 atoms
average map value = 0.06706, steps = 244
shifted from previous position = 25.2
rotated from previous position = 41.6 degrees
atoms outside contour = 19769, contour level = 0.121
Position of P0ACY5_V1_3_c6.pdb (#42) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.87338852 0.31860057 -0.36835603 181.73871732
-0.32554427 -0.94445519 -0.04500355 157.83351017
-0.36223392 0.08061061 0.92859491 152.19099682
Axis 0.19139541 -0.00932811 -0.98146869
Axis point 119.18418196 60.66026679 0.00000000
Rotation angle (degrees) 160.84325917
Shift along axis -116.05903018
> fitmap #55 inMap #1
Fit molecule P38323_V1_2_c6.pdb (#55) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 14496 atoms
average map value = 0.07741, steps = 80
shifted from previous position = 6.1
rotated from previous position = 10.6 degrees
atoms outside contour = 11657, contour level = 0.121
Position of P38323_V1_2_c6.pdb (#55) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.30935693 -0.59655517 0.74055400 167.81863519
0.36456092 -0.79365456 -0.48703981 174.45427305
0.87829017 0.11930791 0.46300324 150.42126401
Axis 0.52969307 -0.12032353 0.83961152
Axis point -0.58693681 110.16990252 0.00000000
Rotation angle (degrees) 145.08520653
Shift along axis 194.19684026
> fitmap #55 inMap #1
Fit molecule P38323_V1_2_c6.pdb (#55) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 14496 atoms
average map value = 0.07741, steps = 28
shifted from previous position = 0.0486
rotated from previous position = 0.0147 degrees
atoms outside contour = 11648, contour level = 0.121
Position of P38323_V1_2_c6.pdb (#55) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.30929431 -0.59675389 0.74042003 167.81402141
0.36457879 -0.79351580 -0.48725248 174.44893495
0.87830481 0.11923702 0.46299373 150.37628367
Axis 0.52968975 -0.12042443 0.83959915
Axis point -0.58817753 110.18211581 0.00000000
Rotation angle (degrees) 145.07560420
Shift along axis 194.13725282
> fitmap #77 inMap #1
Fit molecule Q5T2N8_V1_5_c6.pdb (#77) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11490 atoms
average map value = 0.08011, steps = 36
shifted from previous position = 0.0056
rotated from previous position = 0.0222 degrees
atoms outside contour = 9010, contour level = 0.121
Position of Q5T2N8_V1_5_c6.pdb (#77) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.29310049 -0.93991113 -0.17509761 194.83821314
0.77365181 -0.12555878 -0.62104579 163.92231396
0.56174281 -0.31749341 0.76396528 141.97820839
Axis 0.16062601 -0.38990218 0.90673898
Axis point 5.78493126 182.90921767 -0.00000000
Rotation angle (degrees) 109.10782763
Shift along axis 96.11959230
> fitmap #78 inMap #1
Fit molecule Q5T9A4_V1_4_c6.pdb (#78) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11610 atoms
average map value = 0.07685, steps = 100
shifted from previous position = 11.2
rotated from previous position = 12.1 degrees
atoms outside contour = 8575, contour level = 0.121
Position of Q5T9A4_V1_4_c6.pdb (#78) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.23354119 -0.95537359 -0.18088621 158.20933340
-0.67358007 -0.29312192 0.67850529 154.86987451
-0.70124775 -0.03661759 -0.71197665 147.58279240
Axis -0.77042745 0.56060409 0.30358623
Axis point 0.00000000 158.09592969 81.09806413
Rotation angle (degrees) 152.34749977
Shift along axis 9.73597633
> fitmap #80 inMap #1
Fit molecule Q5TDP6_V1_3_c6.pdb (#80) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 15420 atoms
average map value = 0.05981, steps = 204
shifted from previous position = 55.5
rotated from previous position = 29.3 degrees
atoms outside contour = 12884, contour level = 0.121
Position of Q5TDP6_V1_3_c6.pdb (#80) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.03033935 -0.91965414 -0.39155560 142.19665464
0.85835412 -0.22469543 0.46123764 169.82743166
-0.51215986 -0.32209971 0.79620604 154.97439691
Axis -0.40240118 0.06195453 0.91336462
Axis point 34.18077107 157.82721904 0.00000000
Rotation angle (degrees) 103.26259591
Shift along axis 94.84960822
> fitmap #81 inMap #1
Fit molecule Q6PEY0_V1_4_c6.pdb (#81) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 7710 atoms
average map value = 0.0934, steps = 240
shifted from previous position = 47.9
rotated from previous position = 45.1 degrees
atoms outside contour = 5181, contour level = 0.121
Position of Q6PEY0_V1_4_c6.pdb (#81) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.41402959 -0.27269808 -0.86845567 140.71475006
0.89811700 0.03295927 -0.43851972 149.86322097
0.14820715 -0.96153494 0.23126867 118.41913453
Axis -0.31960429 -0.62126260 0.71546200
Axis point 54.42934443 171.24498871 0.00000000
Rotation angle (degrees) 125.09268712
Shift along axis -53.35306062
> fitmap #82 inMap #1
Fit molecule Q6ZWB6_V1_5_c6.pdb (#82) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 4368 atoms
average map value = 0.09843, steps = 156
shifted from previous position = 42.8
rotated from previous position = 55.4 degrees
atoms outside contour = 2888, contour level = 0.121
Position of Q6ZWB6_V1_5_c6.pdb (#82) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.68647309 -0.66404724 0.29630383 163.78888787
0.59087710 0.27191006 -0.75955854 164.00668842
0.42381476 0.69649564 0.57902925 150.38146943
Axis 0.75582467 -0.06618978 0.65141998
Axis point 0.00000000 77.85129793 159.67626809
Rotation angle (degrees) 74.41270759
Shift along axis 210.90160808
> fitmap #83 inMap #1
Fit molecule Q7DB56_V1_5_c6.pdb (#83) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 8826 atoms
average map value = 0.09588, steps = 140
shifted from previous position = 28.9
rotated from previous position = 42.5 degrees
atoms outside contour = 5756, contour level = 0.121
Position of Q7DB56_V1_5_c6.pdb (#83) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.50569083 -0.43003052 -0.74789741 141.31317551
-0.23857833 -0.76339545 0.60025642 163.97019434
-0.82907006 0.48197628 0.28344612 134.59282451
Axis -0.49441092 0.33930165 0.80027010
Axis point 107.27286421 60.48533745 0.00000000
Rotation angle (degrees) 173.12998730
Shift along axis 93.47919313
> fitmap #84 inMap #1
Fit molecule Q7DB71_V1_3_c6.pdb (#84) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 18174 atoms
average map value = 0.08199, steps = 36
shifted from previous position = 0.0306
rotated from previous position = 0.0131 degrees
atoms outside contour = 13380, contour level = 0.121
Position of Q7DB71_V1_3_c6.pdb (#84) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.97685352 -0.19073071 -0.09684525 157.66968683
0.09256678 -0.03123672 0.99521639 141.54914280
-0.19284346 -0.98114528 -0.01285837 145.62664783
Axis -0.98873981 0.04802625 0.14172887
Axis point 0.00000000 154.71289923 11.88403339
Rotation angle (degrees) 91.92669234
Shift along axis -128.45672036
> fitmap #85 inMap #1
Fit molecule Q8IYT4_V1_4_c6.pdb (#85) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 10968 atoms
average map value = 0.07815, steps = 128
shifted from previous position = 20.3
rotated from previous position = 18.1 degrees
atoms outside contour = 7836, contour level = 0.121
Position of Q8IYT4_V1_4_c6.pdb (#85) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.29575549 0.95368667 0.05486728 157.03131526
0.94713371 0.30023190 -0.11313066 168.24285850
-0.12436411 0.01850764 -0.99206403 154.34306864
Axis 0.59169720 0.80562202 -0.02945474
Axis point 22.30458966 0.00000000 79.39722723
Rotation angle (degrees) 173.61332046
Shift along axis 223.90900588
> fitmap #86 inMap #1
Fit molecule Q8N144_V1_1_c6.pdb (#86) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 6774 atoms
average map value = 0.09943, steps = 140
shifted from previous position = 24.5
rotated from previous position = 24 degrees
atoms outside contour = 4308, contour level = 0.121
Position of Q8N144_V1_1_c6.pdb (#86) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.90049027 -0.29994945 -0.31487714 147.98155932
-0.41402879 -0.81282085 -0.40975898 162.04360750
-0.13303172 0.49935217 -0.85612497 146.55606136
Axis 0.97323587 -0.19467199 -0.12212600
Axis point 0.00000000 75.68753171 105.54307795
Rotation angle (degrees) 152.15664100
Shift along axis 94.57730348
> fitmap #87 inMap #1
Fit molecule Q8N228_V1_4_c6.pdb (#87) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 3360 atoms
average map value = 0.1219, steps = 156
shifted from previous position = 16.2
rotated from previous position = 61.5 degrees
atoms outside contour = 1617, contour level = 0.121
Position of Q8N228_V1_4_c6.pdb (#87) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.10066986 0.84055117 -0.53229626 172.66375607
0.69403231 0.32401440 0.64291043 173.03870385
0.71287077 -0.43415250 -0.55075119 140.88438195
Axis -0.65163268 -0.75333716 -0.08864522
Axis point -30.00370717 0.00000000 62.45960130
Rotation angle (degrees) 124.26584305
Shift along axis -255.35855851
> fitmap #88 inMap #1
Fit molecule Q8TH07_V1_1_c6.pdb (#88) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 6252 atoms
average map value = 0.09004, steps = 140
shifted from previous position = 10.6
rotated from previous position = 17.4 degrees
atoms outside contour = 4398, contour level = 0.121
Position of Q8TH07_V1_1_c6.pdb (#88) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.33314496 0.23516094 0.91307928 178.52749670
-0.93613397 0.19809220 0.29053859 149.13440657
-0.11255055 -0.95155600 0.28613556 145.82494717
Axis -0.62365280 0.51496635 -0.58810445
Axis point 0.00000000 203.19825951 -165.68790015
Rotation angle (degrees) 95.23918419
Shift along axis -120.30027218
> fitmap #89 inMap #1
Fit molecule Q8TH09_V1_3_c6.pdb (#89) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 22242 atoms
average map value = 0.07262, steps = 128
shifted from previous position = 21.4
rotated from previous position = 15.8 degrees
atoms outside contour = 17495, contour level = 0.121
Position of Q8TH09_V1_3_c6.pdb (#89) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.75099774 0.63264307 0.18911675 167.46315766
0.19381764 0.06258833 -0.97903903 175.30842810
-0.63121876 0.77191026 -0.07561369 160.50641697
Axis 0.88308637 0.41373392 -0.22132038
Axis point 0.00000000 -51.54176849 150.27811108
Rotation angle (degrees) 97.52818065
Shift along axis 184.89213408
> fitmap #90 inMap #1
Fit molecule Q8TH14_V1_4_c6.pdb (#90) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 22008 atoms
average map value = 0.07161, steps = 136
shifted from previous position = 27.3
rotated from previous position = 4.68 degrees
atoms outside contour = 17337, contour level = 0.121
Position of Q8TH14_V1_4_c6.pdb (#90) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.79381156 -0.60000546 0.09928068 171.23365196
0.52367526 0.59135569 -0.61323950 153.77303317
0.30923685 0.53878744 0.78363299 184.41774292
Axis 0.70984331 -0.12936849 0.69237725
Axis point 0.00000000 57.24584607 260.99022683
Rotation angle (degrees) 54.23937746
Shift along axis 229.34232788
> fitmap #91 inMap #1
Fit molecule Q8TH16_V1_3_c6.pdb (#91) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 21936 atoms
average map value = 0.07261, steps = 336
shifted from previous position = 44.4
rotated from previous position = 43.8 degrees
atoms outside contour = 17263, contour level = 0.121
Position of Q8TH16_V1_3_c6.pdb (#91) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.74496601 -0.57767773 -0.33363763 152.19848049
-0.61946572 -0.41343828 -0.66733126 147.96036032
0.24756384 0.70381619 -0.66584902 175.00734774
Axis 0.92033958 -0.39011320 -0.02804887
Axis point 0.00000000 63.22762116 133.07340061
Rotation angle (degrees) 131.84829839
Shift along axis 77.44423706
> fitmap #92 inMap #1
Fit molecule Q8TZF9_V1_5_c6.pdb (#92) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 15066 atoms
average map value = 0.07457, steps = 232
shifted from previous position = 49.4
rotated from previous position = 27.7 degrees
atoms outside contour = 11621, contour level = 0.121
Position of Q8TZF9_V1_5_c6.pdb (#92) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.43800120 0.82674382 0.35305750 149.01107908
-0.04940932 -0.41427915 0.90880774 165.07623626
0.89761554 0.38061455 0.22230362 153.85621769
Axis -0.45574967 -0.46987003 -0.75598571
Axis point 37.01256387 28.45305256 0.00000000
Rotation angle (degrees) 144.58621182
Shift along axis -261.78922769
> fitmap #93 inMap #1
Fit molecule Q8TZT8_V1_3_c6.pdb (#93) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 9816 atoms
average map value = 0.08038, steps = 136
shifted from previous position = 28.6
rotated from previous position = 27.8 degrees
atoms outside contour = 7193, contour level = 0.121
Position of Q8TZT8_V1_3_c6.pdb (#93) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.85065539 0.48397855 0.20530505 164.56842867
-0.34634828 0.22212099 0.91143027 154.67458598
0.39551014 -0.84642012 0.35657356 149.21454761
Axis -0.89990601 -0.09737274 -0.42507378
Axis point 0.00000000 104.98741339 -55.89449845
Rotation angle (degrees) 77.60354095
Shift along axis -226.58439787
> fitmap #94 inMap #1
Fit molecule Q8TZU3_V1_3_c6.pdb (#94) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11070 atoms
average map value = 0.09099, steps = 208
shifted from previous position = 13.6
rotated from previous position = 79.6 degrees
atoms outside contour = 7702, contour level = 0.121
Position of Q8TZU3_V1_3_c6.pdb (#94) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.36598336 0.92034040 -0.13794829 170.79492813
0.54702079 -0.09282823 0.83195623 132.87336097
0.75287744 -0.37994272 -0.53741892 137.05293297
Axis -0.78201075 -0.57482952 -0.24089463
Axis point 0.00000000 27.50010014 44.28013545
Rotation angle (degrees) 129.20758563
Shift along axis -242.95831390
> fitmap #94 inMap #1
Fit molecule Q8TZU3_V1_3_c6.pdb (#94) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11070 atoms
average map value = 0.09099, steps = 28
shifted from previous position = 0.0201
rotated from previous position = 0.0129 degrees
atoms outside contour = 7704, contour level = 0.121
Position of Q8TZU3_V1_3_c6.pdb (#94) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.36585479 0.92037546 -0.13805538 170.79832674
0.54696976 -0.09262272 0.83201269 132.87663092
0.75297700 -0.37990794 -0.53730401 137.07195889
Axis -0.78194577 -0.57490481 -0.24092585
Axis point 0.00000000 27.49540877 44.29073916
Rotation angle (degrees) 129.20049293
Shift along axis -242.97062238
> fitmap #95 inMap #1
Fit molecule Q8TZX8_V1_3_c6.pdb (#95) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 13404 atoms
average map value = 0.07924, steps = 96
shifted from previous position = 13.8
rotated from previous position = 12.1 degrees
atoms outside contour = 9879, contour level = 0.121
Position of Q8TZX8_V1_3_c6.pdb (#95) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.92262668 -0.00337383 0.38567943 152.19635402
-0.29372794 -0.64192743 -0.70827472 169.64991235
0.24996780 -0.76675798 0.59126838 139.77282089
Axis -0.17950848 0.41655319 -0.89121274
Axis point 71.38240011 111.15912024 0.00000000
Rotation angle (degrees) 170.62483484
Shift along axis -81.21964304
> fitmap #106 inMap #1
Fit molecule Q8X5E6_V1_4_c6.pdb (#106) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 15834 atoms
average map value = 0.0714, steps = 116
shifted from previous position = 13.5
rotated from previous position = 24.6 degrees
atoms outside contour = 13056, contour level = 0.121
Position of Q8X5E6_V1_4_c6.pdb (#106) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.50149869 0.43252795 -0.74927875 169.71126357
-0.29648675 -0.89953712 -0.32082483 167.55688283
-0.81276975 0.06125798 0.57935549 157.39031598
Axis 0.46283979 0.07691046 -0.88309915
Axis point 147.04026905 67.18420319 0.00000000
Rotation angle (degrees) 155.62171486
Shift along axis -47.55525094
> fitmap #106 inMap #1
Fit molecule Q8X5E6_V1_4_c6.pdb (#106) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 15834 atoms
average map value = 0.0714, steps = 40
shifted from previous position = 0.0355
rotated from previous position = 0.0187 degrees
atoms outside contour = 13056, contour level = 0.121
Position of Q8X5E6_V1_4_c6.pdb (#106) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.50154956 0.43223672 -0.74941274 169.72056454
-0.29629808 -0.89967762 -0.32060508 167.54991286
-0.81280716 0.06125022 0.57930383 157.35691779
Axis 0.46286502 0.07684340 -0.88309177
Axis point 147.02249490 67.19015059 0.00000000
Rotation angle (degrees) 155.63858835
Shift along axis -47.52778133
> fitmap #130 inMap #1
Fit molecule Q9BW62_V1_3_c6.pdb (#130) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 12006 atoms
average map value = 0.07815, steps = 124
shifted from previous position = 16.1
rotated from previous position = 21.6 degrees
atoms outside contour = 8685, contour level = 0.121
Position of Q9BW62_V1_3_c6.pdb (#130) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.67454336 -0.63331407 0.37934753 159.80003646
0.47773455 -0.01727626 -0.87833435 144.66451107
0.56281521 0.77370202 0.29090242 156.84216808
Axis 0.82629570 -0.09176466 0.55571095
Axis point 0.00000000 56.20135543 121.12577281
Rotation angle (degrees) 91.48499986
Shift along axis 205.92590364
> fitmap #131 inMap #1
Fit molecule Q9H078_V1_3_c6.pdb (#131) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 22596 atoms
average map value = 0.06358, steps = 124
shifted from previous position = 15.3
rotated from previous position = 19.9 degrees
atoms outside contour = 18271, contour level = 0.121
Position of Q9H078_V1_3_c6.pdb (#131) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.06775800 -0.37444899 0.92476851 164.33914021
0.09931874 -0.92482617 -0.36719523 171.90694968
0.99274601 0.06696643 0.09985417 146.63147809
Axis 0.67186990 -0.10519591 0.73316073
Axis point -6.85848216 99.87790477 0.00000000
Rotation angle (degrees) 161.14952625
Shift along axis 199.83505464
> fitmap #133 inMap #1
Fit molecule Q9NVI7_V1_2_c6.pdb (#133) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 11490 atoms
average map value = 0.07622, steps = 96
shifted from previous position = 9.55
rotated from previous position = 13 degrees
atoms outside contour = 8549, contour level = 0.121
Position of Q9NVI7_V1_2_c6.pdb (#133) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.32576659 0.94377462 -0.05626362 161.04828033
-0.48335788 0.21739660 0.84799993 154.57249784
0.81255233 -0.24905458 0.52700145 150.29971085
Axis -0.54886512 -0.43467555 -0.71400577
Axis point 51.98271606 19.38544207 0.00000000
Rotation angle (degrees) 87.98951865
Shift along axis -262.89753083
> fitmap #139 inMap #1
Fit molecule Q9Y230_V1_3_c6.pdb (#139) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 16626 atoms
average map value = 0.07965, steps = 132
shifted from previous position = 13.1
rotated from previous position = 24.5 degrees
atoms outside contour = 13927, contour level = 0.121
Position of Q9Y230_V1_3_c6.pdb (#139) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.24427216 -0.93870985 -0.24321786 174.59429870
0.50980088 0.08904195 -0.85567201 137.56733517
0.82488434 -0.33300953 0.45680464 138.26256361
Axis 0.27888914 -0.56993206 0.77291545
Axis point -19.20951176 188.53411658 0.00000000
Rotation angle (degrees) 110.43917308
Shift along axis 77.15369195
> fitmap #140 inMap #1
Fit molecule Q9Y265_V1_3_c6.pdb (#140) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 17088 atoms
average map value = 0.0699, steps = 92
shifted from previous position = 11.2
rotated from previous position = 4.96 degrees
atoms outside contour = 13649, contour level = 0.121
Position of Q9Y265_V1_3_c6.pdb (#140) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.55598958 -0.40274322 0.72709937 162.42405481
0.05398797 -0.89042086 -0.45192477 166.29799154
0.82943408 -0.21201085 0.51680800 142.24814407
Axis 0.45614437 -0.19456729 0.86837543
Axis point 28.55761194 105.79308551 0.00000000
Rotation angle (degrees) 164.75302617
Shift along axis 165.25746160
> fitmap #145 inMap #1
Fit molecule Q96RR1_V1_3_c6.pdb (#145) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 23424 atoms
average map value = 0.06661, steps = 300
shifted from previous position = 73.2
rotated from previous position = 27.6 degrees
atoms outside contour = 18882, contour level = 0.121
Position of Q96RR1_V1_3_c6.pdb (#145) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.39367462 -0.76746364 0.50598405 124.26592482
-0.87712950 -0.47831938 -0.04306283 124.35321097
0.27507113 -0.42686079 -0.86146720 143.48954226
Axis -0.83228440 0.50074580 -0.23781572
Axis point 0.00000000 108.37570636 42.61455631
Rotation angle (degrees) 166.66942676
Shift along axis -75.27931112
> fitmap #150 inMap #1
Fit molecule Q03940_V1_3_c6.pdb (#150) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 16830 atoms
average map value = 0.06962, steps = 76
shifted from previous position = 11.1
rotated from previous position = 4.07 degrees
atoms outside contour = 13450, contour level = 0.121
Position of Q03940_V1_3_c6.pdb (#150) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
-0.35859816 -0.47660425 0.80265544 162.48148386
0.00402339 -0.86062289 -0.50922691 167.55118960
0.93348336 -0.17937843 0.31053535 142.03024027
Axis 0.55211521 -0.21898565 0.80449616
Axis point 13.10764923 109.76745599 0.00000000
Rotation angle (degrees) 162.61965375
Shift along axis 167.27997566
> hide #!11 models
> show #!16 models
> hide #!16 models
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right zoom
> show #!150 models
> hide #!150 models
> show #!145 models
> fitmap #145 inMap #1
Fit molecule Q96RR1_V1_3_c6.pdb (#145) to map
cryosparc_P65_J28_002_volume_map.mrc (#1) using 23424 atoms
average map value = 0.06661, steps = 48
shifted from previous position = 0.00878
rotated from previous position = 0.00898 degrees
atoms outside contour = 18883, contour level = 0.121
Position of Q96RR1_V1_3_c6.pdb (#145) relative to
cryosparc_P65_J28_002_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.39372755 -0.76740834 0.50602674 124.26652008
-0.87713582 -0.47832125 -0.04291310 124.34832079
0.27497521 -0.42695811 -0.86144960 143.49215422
Axis -0.83229731 0.50073184 -0.23779996
Axis point 0.00000000 108.37756252 42.61031469
Rotation angle (degrees) 166.66089804
Shift along axis -75.28395589
> hide #!145 models
> show #!2 models
> hide #!2 models
> show #!3 models
> close #3
> show #!11 models
> show #!16 models
> hide #!11 models
> close #16
> show #!22 models
> hide #!22 models
> show #!23 models
> close #23
> show #!26 models
> ui mousemode right "rotate selected models"
> select add #26
13086 atoms, 13296 bonds, 84 pseudobonds, 1650 residues, 2 models selected
> view matrix models
> #26,0.99302,0.11267,-0.034983,145.15,-0.02994,0.52749,0.84903,122.17,0.11411,-0.84206,0.52718,129.63
> hide #!26 models
> show #!28 models
> select subtract #26
Nothing selected
> hide #!28 models
> show #!29 models
> hide #!29 models
> show #!32 models
> hide #!32 models
> show #!33 models
> close #33
> show #!34 models
> hide #!34 models
> show #!38 models
> hide #!38 models
> show #!42 models
> hide #!42 models
> show #!55 models
> hide #!55 models
> show #!77 models
> close #77
> show #!78 models
> close #78
> show #!80 models
> hide #!80 models
> show #!81 models
> close #81
> show #!82 models
> hide #!1 models
> show #!1 models
> close #82
> show #!83 models
> hide #!1 models
> show #!1 models
> close #83
> show #!84 models
> hide #!1 models
> close #84
> show #!85 models
> show #!1 models
> close #85
> show #!86 models
> hide #!1 models
> show #!1 models
> close #86
> show #87 models
> hide #!1 models
> close #87
> show #!88 models
> close #88
> show #!89 models
> hide #!89 models
> show #!90 models
> close #89
> close #90
> show #!91 models
> close #91
> show #!92 models
> close #92
> show #!93 models
> close #93
> show #!94 models
> close #94
> show #!95 models
> close #95
> show #!106 models
> show #!1 models
> hide #!106 models
> show #!130 models
> hide #!130 models
> show #!131 models
> hide #!131 models
> show #!133 models
> hide #!133 models
> show #!139 models
> close #139
> show #!140 models
> hide #!140 models
> show #!145 models
> hide #!1 models
> hide #!145 models
> show #!150 models
> show #!1 models
> close #150
> show #!11 models
> hide #!1 models
> close #11
> show #!1 models
> save /Users/martinpacesa/Downloads/chaperone_candidates.cxs
Traceback (most recent call last):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 249, in discovery
if hasattr(sm, 'include_state') and not sm.include_state(value):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 543, in include_state
return bool(self.group_map)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 536, in group_map
f = c_function('set_pbgroup_py_instance',
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molc.py", line 31, in c_function
f = getattr(self._c_lib, func_name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 387, in __getattr__
func = self.__getitem__(name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 249, in discovery
if hasattr(sm, 'include_state') and not sm.include_state(value):
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 543, in include_state
return bool(self.group_map)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 536, in group_map
f = c_function('set_pbgroup_py_instance',
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molc.py", line 31, in c_function
f = getattr(self._c_lib, func_name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 387, in __getattr__
func = self.__getitem__(name)
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
AttributeError: dlsym(0x2195259a0, set_pbgroup_py_instance): symbol not found
File
"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/ctypes/__init__.py",
line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache: 8 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 12.5 (21G72)
Kernel Version: Darwin 21.6.0
Time since boot: 23:14
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → set_pbgroup_py_instance: symbol not found |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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