Opened 3 years ago

Last modified 3 years ago

#7481 accepted defect

QMainWindowLayout::tabPosition called with out-of-bounds value '0'

Reported by: disha-gajanan.hiregange@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Window Toolkit Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.4.115-1.el8.elrepo.x86_64-x86_64-with-glibc2.14
ChimeraX Version: 1.2 (2021-04-27 05:33:30 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2 (2021-04-27)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7ls2

Summary of feedback from opening 7ls2 fetched from pdb  
---  
warning | Unable to infer polymer connectivity due to unspecified label_seq_id
for residue "GDP" near line 263968  
notes | Fetching compressed mmCIF 7ls2 from
http://files.rcsb.org/download/7ls2.cif  
Fetching CCD B8Q from http://ligand-expo.rcsb.org/reports/B/B8Q/B8Q.cif  
Fetching CCD I4U from http://ligand-expo.rcsb.org/reports/I/I4U/I4U.cif  
Fetching CCD E7G from http://ligand-expo.rcsb.org/reports/E/E7G/E7G.cif  
Fetching CCD B9H from http://ligand-expo.rcsb.org/reports/B/B9H/B9H.cif  
Fetching CCD B8W from http://ligand-expo.rcsb.org/reports/B/B8W/B8W.cif  
Fetching CCD E6G from http://ligand-expo.rcsb.org/reports/E/E6G/E6G.cif  
Fetching CCD MHG from http://ligand-expo.rcsb.org/reports/M/MHG/MHG.cif  
Fetching CCD B8T from http://ligand-expo.rcsb.org/reports/B/B8T/B8T.cif  
Fetching CCD MLZ from http://ligand-expo.rcsb.org/reports/M/MLZ/MLZ.cif  
Fetching CCD DDE from http://ligand-expo.rcsb.org/reports/D/DDE/DDE.cif  
  
7ls2 title:  
80S ribosome from mouse bound to eEF2 (Class I) [more info...]  
  
Chain information for 7ls2 #1  
---  
Chain | Description  
A | Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein  
A1 | 60S ribosomal protein L7  
A2 | 28S rRNA  
A3 | 40S ribosomal protein S18  
B1 | 60S ribosomal protein L7a  
B2 | 5S rRNA  
B3 | 40S ribosomal protein S19  
C1 | 60S ribosomal protein L9  
C2 | 5.8S rRNA  
C3 | 40S ribosomal protein S20  
D1 | 60S ribosomal protein L10-like  
D2 | 60S ribosomal protein L8  
D3 | 40S ribosomal protein S21  
E1 | 60S ribosomal protein L11  
E2 | 60S ribosomal protein L3  
E3 | 40S ribosomal protein S23  
F1 | 60S ribosomal protein L13  
F2 | 60S ribosomal protein L4  
F3 | 40S ribosomal protein S26  
G1 | 60S ribosomal protein L14  
G2 | 60S ribosomal protein L5  
G3 | 40S ribosomal protein S28  
H1 | 60S ribosomal protein L15  
H2 | 60S ribosomal protein L6  
H3 | 40S ribosomal protein S29  
I2 | 60S ribosomal protein L13a  
I3 | Receptor of activated protein C kinase 1  
J2 | 60S ribosomal protein L17  
J3 | 40S ribosomal protein S2  
K2 | 60S ribosomal protein L18  
K3 | 40S ribosomal protein S6  
L1 | 60S ribosomal protein L10a  
L2 | 60S ribosomal protein L19  
L3 | 40S ribosomal protein S9  
M2 | 60S ribosomal protein L18a  
M3 | 40S ribosomal protein S12  
N2 | 60S ribosomal protein L21  
N3 | 40S ribosomal protein S13  
O2 | 60S ribosomal protein L22  
O3 | 40S ribosomal protein S14  
P2 | 60S ribosomal protein L23  
P3 | 40S ribosomal protein S15a  
Q2 | 60S ribosomal protein L24  
Q3 | 40S ribosomal protein S24  
R2 | 60S ribosomal protein L23a  
R3 | 40S ribosomal protein S25  
S2 | 60S ribosomal protein L26  
S3 | 40S ribosomal protein S27-like  
T2 | 60S ribosomal protein L27  
T3 | 40S ribosomal protein S30  
U2 | 60S ribosomal protein L27a  
U3 | Ubiquitin-40S ribosomal protein S27a  
V2 | 60S ribosomal protein L29  
W2 | 60S ribosomal protein L30  
X2 | 60S ribosomal protein L31  
Y2 | 60S ribosomal protein L32  
Z2 | 60S ribosomal protein L35a  
a2 | 60S ribosomal protein L34  
b2 | 60S ribosomal protein L35  
c2 | 60S ribosomal protein L36  
d2 | 60S ribosomal protein L37  
e2 | 60S ribosomal protein L38  
f2 | 60S ribosomal protein L39  
g2 | Ubiquitin-60S ribosomal protein L40  
h2 | 60S ribosomal protein L41  
i2 | 60S ribosomal protein L36a  
j | 60S acidic ribosomal protein P0  
j2 | 60S ribosomal protein L37a  
k | 60S ribosomal protein L12  
k2 | 60S ribosomal protein L28  
m | Elongation factor 2  
m2 | 18S rRNA  
n2 | tRNA  
o2 | 40S ribosomal protein SA  
p2 | 40S ribosomal protein S3a  
q2 | 40S ribosomal protein S3  
r2 | 40S ribosomal protein S4, X isoform  
s2 | 40S ribosomal protein S5  
t | 40S ribosomal protein S7  
u | 40S ribosomal protein S8  
v2 | 40S ribosomal protein S10  
w2 | 40S ribosomal protein S11  
x2 | 40S ribosomal protein S15  
y2 | 40S ribosomal protein S16  
z2 | 40S ribosomal protein S17  
  
Non-standard residues in 7ls2 #1  
---  
B8N —
(2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic
acid  
MG — magnesium ion  
ZN — zinc ion  
  

> set bgColor white

> open 7cpu

Summary of feedback from opening 7cpu fetched from pdb  
---  
note | Fetching compressed mmCIF 7cpu from
http://files.rcsb.org/download/7cpu.cif  
  
7cpu title:  
Cryo-EM structure of 80S ribosome from mouse kidney [more info...]  
  
Chain information for 7cpu #2  
---  
Chain | Description  
L5 | Mus musculus 28S ribosomal RNA  
L7 | Mus musculus 5S ribosomal RNA  
L8 | Mus musculus 5.8S ribosomal RNA  
LA | 60S ribosomal protein L8  
LB | 60S ribosomal protein L3  
LC | 60S ribosomal protein L4  
LD | 60S ribosomal protein L5  
LE | 60S ribosomal protein L6  
LF | 60S ribosomal protein L7  
LG | 60S ribosomal protein L7a  
LH | 60S ribosomal protein L9  
LI | 60S ribosomal protein L10  
LJ | 60S ribosomal protein L11  
LL | 60S ribosomal protein L13  
LM | 60S ribosomal protein L14  
LN | 60S ribosomal protein L15  
LO | 60S ribosomal protein L13a  
LP | 60S ribosomal protein L17  
LQ | 60S ribosomal protein L18  
LR | 60S ribosomal protein L19  
LS | 60S ribosomal protein L18a  
LT | 60S ribosomal protein L21  
LU | 60S ribosomal protein L22  
LV | 60S ribosomal protein L23  
LW | 60S ribosomal protein L24  
LX | 60S ribosomal protein L23a  
LY | 60S ribosomal protein L26  
LZ | 60S ribosomal protein L27  
La | 60S ribosomal protein L27a  
Lb | 60S ribosomal protein L29  
Lc | 60S ribosomal protein L30  
Ld | 60S ribosomal protein L31  
Le | 60S ribosomal protein L32  
Lf | 60S ribosomal protein L35a  
Lg | 60S ribosomal protein L34  
Lh | 60S ribosomal protein L35  
Li | 60S ribosomal protein L36  
Lj | 60S ribosomal protein L37  
Lk | 60S ribosomal protein L38  
Ll | 60S ribosomal protein L39  
Lm | Ubiquitin-60S ribosomal protein L40  
Ln | 60S ribosomal protein L41  
Lo | 60S ribosomal protein L36a  
Lp | 60S ribosomal protein L37a  
Lr | 60S ribosomal protein L28  
S2 | Mus musculus 18S ribosomal RNA  
S6 | Met-tRNA  
SA | 40S ribosomal protein SA  
SB | 40S ribosomal protein S3a  
SC | 40S ribosomal protein S2  
SD | 40S ribosomal protein S3  
SE | 40S ribosomal protein S4, X isoform  
SF | 40S ribosomal protein S5  
SG | 40S ribosomal protein S6  
SH | 40S ribosomal protein S7  
SI | 40S ribosomal protein S8  
SJ | 40S ribosomal protein S9  
SK | 40S ribosomal protein S10  
SL | 40S ribosomal protein S11  
SN | 40S ribosomal protein S13  
SO | 40S ribosomal protein S14  
SP | 40S ribosomal protein S15  
SQ | 40S ribosomal protein S16  
SR | 40S ribosomal protein S17  
SS | 40S ribosomal protein S18  
ST | 40S ribosomal protein S19  
SU | 40S ribosomal protein S20  
SV | 40S ribosomal protein S21  
SW | 40S ribosomal protein S15a  
SX | 40S ribosomal protein S23  
SY | 40S ribosomal protein S24  
SZ | 40S ribosomal protein S25  
Sa | 40S ribosomal protein S26  
Sb | 40S ribosomal protein S27  
Sc | 40S ribosomal protein S28  
Sd | 40S ribosomal protein S29  
Se | 40S ribosomal protein S30  
Sg | Receptor of activated protein C kinase 1  
  
Non-standard residues in 7cpu #2  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open 7cpv

Summary of feedback from opening 7cpv fetched from pdb  
---  
note | Fetching compressed mmCIF 7cpv from
http://files.rcsb.org/download/7cpv.cif  
  
7cpv title:  
Cryo-EM structure of 80S ribosome from mouse testis [more info...]  
  
Chain information for 7cpv #3  
---  
Chain | Description  
L5 | Mus musculus 28S ribosomal RNA  
L7 | Mus musculus 5S ribosomal RNA  
L8 | Mus musculus 5.8S ribosomal RNA  
LA | 60S ribosomal protein L8  
LB | 60S ribosomal protein L3  
LC | 60S ribosomal protein L4  
LD | 60S ribosomal protein L5  
LE | 60S ribosomal protein L6  
LF | 60S ribosomal protein L7  
LG | 60S ribosomal protein L7a  
LH | 60S ribosomal protein L9  
LI | 60S ribosomal protein L10-like  
LJ | 60S ribosomal protein L11  
LL | 60S ribosomal protein L13  
LM | 60S ribosomal protein L14  
LN | 60S ribosomal protein L15  
LO | 60S ribosomal protein L13a  
LP | 60S ribosomal protein L17  
LQ | 60S ribosomal protein L18  
LR | 60S ribosomal protein L19  
LS | 60S ribosomal protein L18a  
LT | 60S ribosomal protein L21  
LU | 60S ribosomal protein L22  
LV | 60S ribosomal protein L23  
LW | 60S ribosomal protein L24  
LX | 60S ribosomal protein L23a  
LY | 60S ribosomal protein L26  
LZ | 60S ribosomal protein L27  
La | 60S ribosomal protein L27a  
Lb | 60S ribosomal protein L29  
Lc | 60S ribosomal protein L30  
Ld | 60S ribosomal protein L31  
Le | 60S ribosomal protein L32  
Lf | 60S ribosomal protein L35a  
Lg | 60S ribosomal protein L34  
Lh | 60S ribosomal protein L35  
Li | 60S ribosomal protein L36  
Lj | 60S ribosomal protein L37  
Lk | 60S ribosomal protein L38  
Ll | Ribosomal protein L39-like  
Lm | Ubiquitin-60S ribosomal protein L40  
Ln | 60S ribosomal protein L41  
Lo | 60S ribosomal protein L36a  
Lp | 60S ribosomal protein L37a  
Lr | 60S ribosomal protein L28  
S2 | Mus musculus 18S ribosomal RNA  
S6 | Met-tRNA  
SA | 40S ribosomal protein SA  
SB | 40S ribosomal protein S3a  
SC | 40S ribosomal protein S2  
SD | 40S ribosomal protein S3  
SE | 40S ribosomal protein S4, X isoform  
SF | 40S ribosomal protein S5  
SG | 40S ribosomal protein S6  
SH | 40S ribosomal protein S7  
SI | 40S ribosomal protein S8  
SJ | 40S ribosomal protein S9  
SK | 40S ribosomal protein S10  
SL | 40S ribosomal protein S11  
SN | 40S ribosomal protein S13  
SO | 40S ribosomal protein S14  
SP | 40S ribosomal protein S15  
SQ | 40S ribosomal protein S16  
SR | 40S ribosomal protein S17  
SS | 40S ribosomal protein S18  
ST | 40S ribosomal protein S19  
SU | 40S ribosomal protein S20  
SV | 40S ribosomal protein S21  
SW | 40S ribosomal protein S15a  
SX | 40S ribosomal protein S23  
SY | 40S ribosomal protein S24  
SZ | 40S ribosomal protein S25  
Sa | 40S ribosomal protein S26  
Sb | 40S ribosomal protein S27  
Sc | 40S ribosomal protein S28  
Sd | 40S ribosomal protein S29  
Se | 40S ribosomal protein S30  
Sg | Receptor of activated protein C kinase 1  
  
Non-standard residues in 7cpv #3  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> select all

639400 atoms, 686465 bonds, 16371 pseudobonds, 51984 residues, 12 models
selected  

> show sel cartoons

> hide sel atoms

> hide #!1 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> show #!1 models

> ui tool show Matchmaker

> matchmaker #!2-3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7ls2, chain E2 (#1) with 7cpu, chain LB (#2), sequence alignment
score = 1938.9  
RMSD between 391 pruned atom pairs is 0.597 angstroms; (across all 397 pairs:
0.731)  
  
Matchmaker 7ls2, chain E2 (#1) with 7cpv, chain LB (#3), sequence alignment
score = 1971.9  
RMSD between 391 pruned atom pairs is 0.586 angstroms; (across all 397 pairs:
0.717)  
  

> matchmaker #!2-3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7ls2, chain E2 (#1) with 7cpu, chain LB (#2), sequence alignment
score = 1938.9  
RMSD between 391 pruned atom pairs is 0.597 angstroms; (across all 397 pairs:
0.731)  
  
Matchmaker 7ls2, chain E2 (#1) with 7cpv, chain LB (#3), sequence alignment
score = 1971.9  
RMSD between 391 pruned atom pairs is 0.586 angstroms; (across all 397 pairs:
0.717)  
  

QMainWindowLayout::tabPosition called with out-of-bounds value '0'  

QMainWindowLayout::tabPosition called with out-of-bounds value '0'  

Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.8/site-packages/chimerax/ui/gui.py", line
2149, in <lambda>  
dw.closeEvent = lambda e, *, tw=tool_window, mw=mw: mw.close_request(tw, e)  
File "/opt/UCSF/ChimeraX/lib/python3.8/site-packages/chimerax/ui/gui.py", line
620, in close_request  
all_windows = self.tool_instance_to_windows[tool_instance]  
KeyError: <chimerax.match_maker.tool.MatchMakerTool object at 0x151e6c527340>  
  
KeyError:  
  
File "/opt/UCSF/ChimeraX/lib/python3.8/site-packages/chimerax/ui/gui.py", line
620, in close_request  
all_windows = self.tool_instance_to_windows[tool_instance]  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 418.113
OpenGL renderer: Quadro RTX 4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: ASUS
Model: System Product Name
OS: CentOS Stream 8 
Architecture: 64bit ELF
Virutal Machine: none
CPU: 24 AMD Ryzen 9 5900X 12-Core Processor
Cache Size: 512 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           62Gi        23Gi        29Gi       518Mi       9.6Gi        37Gi
	Swap:          31Gi        13Gi        17Gi

Graphics:
	05:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU104GL [Quadro RTX 4000] [10de:1eb1] (rev a1)	
	Subsystem: NVIDIA Corporation Device [10de:12a0]	
	Kernel driver in use: nvidia
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.3
    ChimeraX-AtomicLibrary: 3.1.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.3
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.7
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Window Toolkit
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → QMainWindowLayout::tabPosition called with out-of-bounds value '0'

comment:2 by Eric Pettersen, 3 years ago

Hi Disha,

Thanks for reporting this problem. I would suggest upgrading to the 1.4 release of ChimeraX, which uses an entirely different version of the Qt windowing toolkit than Chimera 1.2 that you are currently using. That might fix the problem in and of itself, but at least would mean that you are using the same version that we currently use should the problem happen again (and if it does, you should report it again).

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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