Opened 3 years ago

Closed 3 years ago

#7408 closed defect (nonchimerax)

Graphics crash, macOS 12.5, AMD Radeon R9 M395

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Current thread 0x000000010a47c600 (most recent call first):
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 496 in swap_buffers
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 179 in draw
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.4 1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
  "uptime" : 2600,
  "procLaunch" : "2022-08-05 18:15:27.3852 -0400",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 503,
  "deployVersion" : 210,
  "modelCode" : "iMac17,1",
  "procStartAbsTime" : 2507892758704,
  "coalitionID" : 2085,
  "osVersion" : {
    "train" : "macOS 12.5",
    "build" : "21G72",
    "releaseType" : "User"
  },
  "captureTime" : "2022-08-05 18:17:09.9367 -0400",
  "incident" : "179804DD-F977-4CCB-83D7-A8C936D1FBAC",
  "bug_type" : "309",
  "pid" : 2586,
  "procExitAbsTime" : 2610401189743,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.4 1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"992BF57C-6E8D-50F0-AD59-DF30F5223B93","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "2D4715BD-FA4F-0D39-E3B7-775AFCF69647",
  "sip" : "disabled",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
  "asi" : {"libsystem_c.dylib":["abort() called"]},
  "asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : 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    "path" : "\/Applications\/ChimeraX-1.4 1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
    "name" : "QtWidgets.abi3.so"
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    "path" : "\/Applications\/ChimeraX-1.4 1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
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    "name" : "QtWebEngineCore"
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    "path" : "\/Applications\/ChimeraX-1.4 1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numexpr\/interpreter.cpython-39-darwin.so",
    "name" : "interpreter.cpython-39-darwin.so"
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},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=3.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.7G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 3840K        4 \nCG image                            68K        7 \nColorSync                          224K       26 \nCoreAnimation                      144K       10 \nCoreGraphics                        12K        2 \nCoreServices                       168K        1 \nCoreUI image data                 2356K       20 \nFoundation                          16K        1 \nKernel Alloc Once                    8K        1 \nMALLOC                             3.0G     1022 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        4 \nObjC additional data                15K        1 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        128K       32 \nStack                            159.2M       33 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      104.5M       99 \nVM_ALLOCATE (reserved)            32.0M        1         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            58.2M      721 \n__DATA_CONST                      31.0M      340 \n__DATA_DIRTY                      1641K      213 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       680.0M      183 \n__TEXT                           811.4M      706 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                      112.8M       41 \nshared memory                     2972K       27 \n===========                     =======  ======= \nTOTAL                              5.4G     3521 \nTOTAL, minus reserved VM space     5.0G     3521 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
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},
  "trialInfo" : {
  "rollouts" : [
    {
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      "factorPackIds" : {

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      "factorPackIds" : {

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      "deploymentId" : 240000008
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/jingyu/Desktop/Image
> processing/RNAgranules_tomo/subtomo2Chimera/TS_001_all_classes_ArtiaX/myco_script_demo
> copy.cxc"

> cd "/Users/jingyu/Desktop/Image
> processing/RNAgranules_tomo/subtomo2Chimera/TS_001_all_classes_ArtiaX"

Current working directory is: /Users/jingyu/Desktop/Image
processing/RNAgranules_tomo/subtomo2Chimera/TS_001_all_classes_ArtiaX  

> artiax start

> open With_AP_PE_tRNA_bin1_job216.star format star

Opened Particle list With_AP_PE_tRNA_bin1_job216.star with 4721 particles.  

> open With_AP_PE_tRNA_shifted_right_bin1_job237.star format star

Opened Particle list With_AP_PE_tRNA_shifted_right_bin1_job237.star with 2352
particles.  

> open With_PPtRNA_bin1_job257.star format star

Opened Particle list With_PPtRNA_bin1_job257.star with 1277 particles.  

> open With_PPtRNA_L1_stalk_back_bin1_job267.star format star

Opened Particle list With_PPtRNA_L1_stalk_back_bin1_job267.star with 765
particles.  

> open refine_after_no_align_with_only_60S_bin2_job052.star format star

Opened Particle list refine_after_no_align_with_only_60S_bin2_job052.star with
7617 particles.  

> artiax particles #1.2.1 color 50,50,50,100

> artiax particles #1.2.2 color 94,64,100,100

> artiax particles #1.2.3 color 100,80,60,100

> artiax particles #1.2.4 color 0,46,86,100

> artiax particles #1.2.5 color 100,100,50,100

> artiax particles #1.2.1 originScaleFactor 2.12

> artiax particles #1.2.2 originScaleFactor 2.12

> artiax particles #1.2.3 originScaleFactor 2.12

> artiax particles #1.2.4 originScaleFactor 2.12

> artiax particles #1.2.5 originScaleFactor 2.12

> artiax view xy

> open
> refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_bin1_job216_bin4.mrc

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_bin1_job216_bin4.mrc
as #2, grid size 64,64,64, pixel 8.48, shown at level 4.46, step 1, values
float32  

> open
> refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_shifted_right_bin1_job237_bin4.mrc

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_shifted_right_bin1_job237_bin4.mrc
as #3, grid size 64,64,64, pixel 8.48, shown at level 4.45, step 1, values
float32  

> open
> refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_bin1_job257_bin4.mrc

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_bin1_job257_bin4.mrc
as #4, grid size 64,64,64, pixel 8.48, shown at level 4.48, step 1, values
float32  

> open
> refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_L1_stalk_back_bin1_job267_bin4.mrc

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_L1_stalk_back_bin1_job267_bin4.mrc
as #5, grid size 64,64,64, pixel 8.48, shown at level 4.34, step 1, values
float32  

> open refine_after_no_align_with_only_60S_bin2_job052_bin4.mrc

Opened refine_after_no_align_with_only_60S_bin2_job052_bin4.mrc as #6, grid
size 64,64,64, pixel 8.48, shown at level 4.18, step 1, values float32  

> artiax attach #2 toParticleList #1.2.1

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_bin1_job216_bin4.mrc
as #1.2.1.1.1, grid size 64,64,64, pixel 8.48, shown at level 4.46, step 1,
values float32  

> volume #1.2.1.1.1 capFaces false

> artiax attach #3 toParticleList #1.2.2

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_withAP_PE_tRNA_shifted_right_bin1_job237_bin4.mrc
as #1.2.2.1.1, grid size 64,64,64, pixel 8.48, shown at level 4.45, step 1,
values float32  

> volume #1.2.2.1.1 capFaces false

> artiax attach #4 toParticleList #1.2.3

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_bin1_job257_bin4.mrc
as #1.2.3.1.1, grid size 64,64,64, pixel 8.48, shown at level 4.48, step 1,
values float32  

> volume #1.2.3.1.1 capFaces false

> artiax attach #5 toParticleList #1.2.4

Opened
refine_after_frame_CTF_withmask_after_focus_noalign_with_PPtRNA_L1_stalk_back_bin1_job267_bin4.mrc
as #1.2.4.1.1, grid size 64,64,64, pixel 8.48, shown at level 4.34, step 1,
values float32  

> volume #1.2.4.1.1 capFaces false

> artiax attach #6 toParticleList #1.2.5

Opened refine_after_no_align_with_only_60S_bin2_job052_bin4.mrc as #1.2.5.1.1,
grid size 64,64,64, pixel 8.48, shown at level 4.18, step 1, values float32  

> volume #1.2.5.1.1 capFaces false

> artiax particles #1.2.1 surfaceLevel 3.49

> artiax particles #1.2.2 surfaceLevel 3.43

> artiax particles #1.2.3 surfaceLevel 3.03

> artiax particles #1.2.4 surfaceLevel 2.58

> artiax particles #1.2.5 surfaceLevel 3.79

> artiax hide axes

> artiax hide markers

> open "/Users/jingyu/Desktop/Image
> processing/RNAgranules_tomo/tiltseries/TS_001/TS_001_rec.mrc"

Opened TS_001_rec.mrc as #2, grid size 1023,1440,350, pixel 8.48,8.48,8.48,
shown at level 22.1, step 1, values int16  

> artiax add tomo #2

Opened TS_001_rec.mrc as #1.1.1, grid size 1023,1440,350, pixel
8.48,8.48,8.48, shown at level 22.1, step 1, values int16  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 pixelSize 8.48

> artiax view xy

> volume #1.1.1 style image region 0,0,174,1022,1439,174 step 1

> set bgColor black

> camera mono

> material dull

> lighting soft depthCue true depthCueStart 0.5 depthCueEnd 1.2
> ambientIntensity 2 shadows true qualityOfShadows finer multiShadow 512
> msMapSize 1024

> artiax view xy

executed myco_script_demo copy.cxc  


===== Log before crash end =====

Log:
Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon R9 M395 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac17,1
      Processor Name: Quad-Core Intel Core i7
      Processor Speed: 4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 8 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 451.140.1.0.0
      OS Loader Version: 540.120.3~19
      SMC Version (system): 2.34f3

Software:

    System Software Overview:

      System Version: macOS 12.5 (21G72)
      Kernel Version: Darwin 21.6.0
      Time since boot: 44 minutes

Graphics/Displays:

    AMD Radeon R9 M395:

      Chipset Model: AMD Radeon R9 M395
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 2 GB
      Vendor: AMD (0x1002)
      Device ID: 0x6920
      Revision ID: 0x0001
      ROM Revision: 113-C905AA-799
      VBIOS Version: 113-C905A1-007
      EFI Driver Version: 01.00.799
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 5K (5120 x 2880)
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-ArtiaX: 0.1
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    pandas: 1.4.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    starfile: 0.4.11
    suds-community: 1.0.0
    superqt: 0.3.3
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    typing-extensions: 4.3.0
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Graphics hardware encountered an error and was reset

comment:2 by Tom Goddard, 3 years ago

Resolution: → nonchimerax
Status: assigned → closed
Summary: Graphics hardware encountered an error and was reset → Graphics crash, macOS 12.5, AMD Radeon R9 M395

Apple Intel graphics driver crash.

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