wiki:phenix-8-11-22

Version 4 (modified by pett, 3 years ago) ( diff )

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Phenix

  • Douse results-browsing tool; implemented all suggestions from #7066:
    • Refactored code to support separate Check Waters tool
    • Change sphere depiction to stick
    • Reduce distance font side and # decimal places to reduce crowding
    • Always show H-bonds
    • H-bonds and Density table columns (lots of changes to table code)
    • Check Waters only:
      • Put in Structure Analysis category instead of Volume Data
      • Help page, courtesy of Elaine
    • Douse: radio buttons across top
    • Douse-launcher tool (Phenix→Water Placement)
    • Use PhenixUI as bundle name (leaving Tristan's Phenix bundle)

ChimeraX completed

  • NIAID: Change Chain IDs command and tool
  • Fixed UniProt fetch (Chimera too)
  • Fixed crash in spatial search where values were not halvable

ChimeraX in progress

  • Axes/Planes/Centroids tool
    • Changed picking of models (PickedModel class)
  • Render By Attribute tool
  • NIAID: Dock Prep
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