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Opened 3 years ago
Closed 3 years ago
#7560 closed defect (can't reproduce)
Crash using QFileDialog.getSaveFileName
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d
Current thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.pWindows fatal exception: ycode 0x"8001010e, line
58 in runWindows fatal exception: _ccode 0xo8001010em
manWindows fatal exception: dcode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raX 1.3\bin\lib\site-packageWindows fatal exception: scode 0x\8001010ec
himerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program FilesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
XWindows fatal exception: code 0x18001010e.
3Windows fatal exception: \code 0xb8001010ei
nWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-Windows fatal exception: pacode 0xc8001010ek
ages\CWindows fatal exception: hcode 0xi8001010em
eraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in Windows fatal exception: gcode 0xe8001010et
_coWindows fatal exception: mmcode 0xa8001010en
d
Windows fatal exception: File code 0x"8001010eC
:\PWindows fatal exception: rcode 0xo8001010eg
ramWindows fatal exception: code 0xF8001010ei
les\Windows fatal exception: Ccode 0xh8001010ei
meraXWindows fatal exception: code 0x18001010e.
3\bin\lib\site-pWindows fatal exception: acode 0xc8001010ek
ages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0x8001010es
\cWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xx8001010e\
ui\Windows fatal exception: gcode 0xu8001010ei
.pWindows fatal exception: ycode 0x"8001010e, line
301 in Windows fatal exception: ecode 0xv8001010ee
nt_loop
File "C:Windows fatal exception: \code 0xP8001010er
ogram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\PrograWindows fatal exception: code 0xm8001010e
FileWindows fatal exception: scode 0x\8001010eC
himWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0x8001010en
\lWindows fatal exception: icode 0xb8001010e\
runWindows fatal exception: pcode 0xy8001010e.
py", line 197 in _run_module_as_main
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Thread 0x00004ec8Windows fatal exception: (most recent call first):
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lWindows fatal exception: code 0xi8001010eb
\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3Windows fatal exception: code 0x8001010e\
bin\Windows fatal exception: code 0xl8001010ei
b\siWindows fatal exception: tcode 0xe8001010e-
pacWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imeWindows fatal exception: rcode 0xa8001010ex
\uWindows fatal exception: icode 0x\8001010eg
ui.py", line 301 in eWindows fatal exception: vcode 0xe8001010en
t_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in Windows fatal exception:
code 0x File 8001010e"
C:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
in\lib\rWindows fatal exception: ucode 0xn8001010ep
y.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeWindows fatal exception: rcode 0xa8001010eX
1.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\rWindows fatal exception: ucode 0xn8001010ep
y.Windows fatal exception: pcode 0xy8001010e"
, line 197Windows fatal exception: in code 0x_8001010er
unWindows fatal exception: _code 0xm8001010eo
dule_as_main
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Thread 0x00004ec8Windows fatal exception: (most recent call first):
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imeraX Windows fatal exception: 1code 0x.8001010e3
\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.pWindows fatal exception: ycode 0x"8001010e, line
301 in eveWindows fatal exception: ncode 0xt8001010e_
loWindows fatal exception: ocode 0xp8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
himeraX 1.3\bin\lib\site-packages\ChimerWindows fatal exception: acode 0xX8001010e_
main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Windows fatal exception: Thread 0xcode 0x00004ec88001010e (most recent call first):
File "Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aX 1.3\biWindows fatal exception: ncode 0x\8001010el
ib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-pacWindows fatal exception: kcode 0xa8001010eg
es\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
_mWindows fatal exception: acode 0xi8001010en
.pWindows fatal exception: ycode 0x"8001010e, line
1018 in Windows fatal exception:
File "C:\ProgWindows fatal exception: rcode 0xa8001010em
Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\PrograWindows fatal exception: code 0xm8001010e
Files\CWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: code 0x8001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xs8001010ei
teWindows fatal exception: -code 0xp8001010ea
ckages\ChimeraX_main.pWindows fatal exception: ycode 0x"8001010e, line
867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: code 0xl8001010ei
b\threadiWindows fatal exception: ncode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e1284
in rWindows fatal exception: ucode 0xn8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
les\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: lcode 0xi8001010eb
\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bWindows fatal exception: ocode 0xo8001010et
straWindows fatal exception: pcode 0x_8001010ei
nnWindows fatal exception: ecode 0xr8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChimeraX 1.3\biWindows fatal exception: ncode 0x\8001010el
ib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX Windows fatal exception: 1code 0x.8001010e3\
bin\lWindows fatal exception: icode 0xb8001010e\
runWindows fatal exception: pcode 0xy8001010e.
py"Windows fatal exception: , line code 0x878001010e in
_rWindows fatal exception: ucode 0xn8001010e_
coWindows fatal exception: dcode 0xe8001010e
File "CWindows fatal exception: :code 0x\8001010ePr
ogram Files\ChimeraX 1Windows fatal exception: .code 0x38001010e\
bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Windows fatal exception: Thread 0xcode 0x0000137c8001010e (most recent call first):
File "CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bin\lib\threading.py", line Windows fatal exception: 316code 0x in 8001010ew
ait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bWindows fatal exception: code 0xo8001010eo
tstraWindows fatal exception: pcode 0x
8001010e
Thread 0x00004ec8 (most recent call first):
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ocode 0xg8001010er
am Windows fatal exception: Fcode 0xi8001010el
es\Windows fatal exception: Ccode 0xh8001010ei
merWindows fatal exception: acode 0xX8001010e
1.3\bin\lib\site-paWindows fatal exception: ccode 0xka8001010eg
es\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\toWindows fatal exception: ocode 0xl8001010e.
py"Windows fatal exception: , line code 0x588001010e in
runWindows fatal exception: _code 0xc8001010eo
mmWindows fatal exception: acode 0xn8001010ed
Windows fatal exception: File code 0x"8001010eC
:\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
iles\ChimeraWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChWindows fatal exception: icode 0xm8001010ee
raX_mWindows fatal exception: acode 0xi8001010en
.pWindows fatal exception: ycode 0x"8001010e, line
1018 in Windows fatal exception:
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
am Files\ChWindows fatal exception: icode 0xm8001010ee
raX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1Windows fatal exception: code 0x.8001010e3
\bin\lWindows fatal exception: icode 0xb8001010e\
threWindows fatal exception: acode 0xd8001010ei
ng.pWindows fatal exception: ycode 0x"8001010e, line
316 in waWindows fatal exception: icode 0xt8001010e
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
Files\ChimeraWindows fatal exception: Xcode 0x 8001010e
1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:Windows fatal exception: \code 0xP8001010er
ogrWindows fatal exception: amcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aX Windows fatal exception: 1code 0x.8001010e3\
bin\Windows fatal exception: lcode 0xi8001010eb
\thWindows fatal exception: rcode 0xe8001010ea
ding.py", line 930 in _bootstWindows fatal exception: rcode 0xa8001010ep
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChiWindows fatal exception: code 0xm8001010ee
raX 1.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\sWindows fatal exception: icode 0xt8001010ee
-pWindows fatal exception: acode 0xc8001010e
kaWindows fatal exception: gcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
eraX_main.py", line 1018 in
Windows fatal exception: File code 0x"8001010eC
:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in Windows fatal exception: rcode 0xu8001010en
_comWindows fatal exception: mcode 0xa8001010en
d
Windows fatal exception: code 0x File 8001010e"
C:Windows fatal exception: \Pcode 0xr8001010eo
gramWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aX 1.3\bin\liWindows fatal exception: bcode 0x\8001010es
ite-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Thread 0x0000137c (most recent call first):
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\threadWindows fatal exception: icode 0xn8001010eg
.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-pWindows fatal exception: acode 0xck8001010ea
gesWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
x\Windows fatal exception: ccode 0xl8001010ea
shWindows fatal exception: ecode 0xs8001010e\
guWindows fatal exception: icode 0x.8001010ep
y"Windows fatal exception: , line code 0x4378001010e in
get_command
File "C:\ProWindows fatal exception: gcode 0xr8001010ea
m Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_modulWindows fatal exception: ecode 0x_8001010ea
s_maWindows fatal exception: icode 0xn8001010e
Thread 0x0000137cWindows fatal exception: (most recent call first):
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meraX 1.3\biWindows fatal exception: ncode 0x\8001010el
ib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: code 0xi8001010en
\libWindows fatal exception: \code 0xt8001010eh
reaWindows fatal exception: code 0xdi8001010en
g.Windows fatal exception: pcode 0xy8001010e"
, line 973Windows fatal exception: in code 0x_b8001010eo
otstrWindows fatal exception: acode 0xp8001010e_
innWindows fatal exception: ecode 0xr8001010e
File "C:\ProgrWindows fatal exception: acode 0xm8001010e
Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\gui.py", line 437 in get_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\clashes\tool.py", line 58 in run_command
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000137c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004ec8 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 515 in _cursor_position
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\Users\Snyder-
> Walcott\Documents\Research_Projects\MethylTransferase_screening\EMGM_Additional_Folders\95539256_5kqr_DRH\docking\pose002.mol2
> format mol2
Opened pose002.mol2 containing 1 structures (104 atoms, 110 bonds)
> ui mousemode right select
Drag select of 1 atoms
> delete atoms sel
> delete bonds sel
Drag select of 4 atoms, 2 bonds
> delete atoms sel
> delete bonds sel
> ui mousemode right rotate
> ui tool show "Build Structure"
> addh
Summary of feedback from adding hydrogens to 5kqr-ZINC95539256-2 #1
---
notes | Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini:
1 hydrogen bonds
5 hydrogens added
> save C:/Users/Snyder-
> Walcott/Documents/Research_Projects/MethylTransferase_screening/FixedAutoDock/5kqr_lead_pose2.mol2
> open C:\Users\Snyder-
> Walcott\Documents\Research_Projects\MethylTransferase_screening\MethylTransferaseStructures\5kqr.pdb
> format pdb
5kqr.pdb title:
Structure of NS5 methyltransferase from zika virus bound to S-
adenosylmethionine [more info...]
Chain information for 5kqr.pdb #2
---
Chain | Description | UniProt
A | methyltransferase | H9A910_ZIKV
Non-standard residues in 5kqr.pdb #2
---
CL — chloride ion
PO4 — phosphate ion
SAM — S-adenosylmethionine
> select :SAM
27 atoms, 29 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> select #1
104 atoms, 110 bonds, 1 residue, 1 model selected
> ui tool show Contacts
> contacts sel saveFile C:/Users/Snyder-
> Walcott/Documents/Research_Projects/MethylTransferase_screening/FixedAutoDock/5kqr_lead_contacts.txt
> makePseudobonds false log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
245 contacts
atom1 atom2 overlap distance
5kqr-ZINC95539256-2 #1/? UNK 1 C24 5kqr.pdb #2/A HOH 641 O 2.551 0.609
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A HOH 579 O 2.398 0.762
5kqr-ZINC95539256-2 #1/? UNK 1 H37 5kqr.pdb #2/A HOH 547 O 2.206 0.254
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A HOH 579 O 2.104 1.056
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A HOH 547 O 2.068 1.092
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A HOH 515 O 2.000 1.160
5kqr-ZINC95539256-2 #1/? UNK 1 C37 5kqr.pdb #2/A HOH 590 O 1.995 1.165
5kqr-ZINC95539256-2 #1/? UNK 1 C13 5kqr.pdb #2/A HOH 528 O 1.913 1.247
5kqr-ZINC95539256-2 #1/? UNK 1 O3 5kqr.pdb #2/A HOH 641 O 1.875 0.665
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A HOH 494 O 1.796 1.364
5kqr-ZINC95539256-2 #1/? UNK 1 H38 5kqr.pdb #2/A HOH 515 O 1.700 0.760
5kqr-ZINC95539256-2 #1/? UNK 1 H15 5kqr.pdb #2/A HOH 528 O 1.648 0.812
5kqr-ZINC95539256-2 #1/? UNK 1 H13 5kqr.pdb #2/A HOH 653 O 1.547 0.913
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 477 O 1.535 1.625
5kqr-ZINC95539256-2 #1/? UNK 1 HC1 5kqr.pdb #2/A HOH 590 O 1.499 0.961
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A HOH 612 O 1.493 1.667
5kqr-ZINC95539256-2 #1/? UNK 1 C25 5kqr.pdb #2/A HOH 494 O 1.485 1.675
5kqr-ZINC95539256-2 #1/? UNK 1 H41 5kqr.pdb #2/A HOH 612 O 1.478 0.982
5kqr-ZINC95539256-2 #1/? UNK 1 C14 5kqr.pdb #2/A HOH 528 O 1.452 1.708
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 515 O 1.407 1.753
5kqr-ZINC95539256-2 #1/? UNK 1 C10 5kqr.pdb #2/A HOH 653 O 1.404 1.756
5kqr-ZINC95539256-2 #1/? UNK 1 C23 5kqr.pdb #2/A HOH 641 O 1.362 1.798
5kqr-ZINC95539256-2 #1/? UNK 1 H42 5kqr.pdb #2/A HOH 590 O 1.306 1.154
5kqr-ZINC95539256-2 #1/? UNK 1 H27 5kqr.pdb #2/A HOH 494 O 1.237 1.223
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A HOH 579 O 1.179 1.981
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A HOH 547 O 1.151 2.009
5kqr-ZINC95539256-2 #1/? UNK 1 H36 5kqr.pdb #2/A HOH 579 O 1.147 1.313
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A HOH 636 O 1.121 2.039
5kqr-ZINC95539256-2 #1/? UNK 1 H12 5kqr.pdb #2/A HOH 514 O 1.066 1.394
5kqr-ZINC95539256-2 #1/? UNK 1 C30 5kqr.pdb #2/A HOH 636 O 1.062 2.098
5kqr-ZINC95539256-2 #1/? UNK 1 H30 5kqr.pdb #2/A HOH 686 O 1.055 1.005
5kqr-ZINC95539256-2 #1/? UNK 1 C28 5kqr.pdb #2/A HOH 612 O 1.054 2.106
5kqr-ZINC95539256-2 #1/? UNK 1 C37 5kqr.pdb #2/A HOH 612 O 1.046 2.114
5kqr-ZINC95539256-2 #1/? UNK 1 N8 5kqr.pdb #2/A HOH 686 O 1.030 1.655
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A HOH 579 O 1.007 2.153
5kqr-ZINC95539256-2 #1/? UNK 1 H26 5kqr.pdb #2/A HOH 494 O 0.993 1.467
5kqr-ZINC95539256-2 #1/? UNK 1 H22 5kqr.pdb #2/A PO4 302 O4 0.937 1.483
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A HOH 590 O 0.918 2.242
5kqr-ZINC95539256-2 #1/? UNK 1 C25 5kqr.pdb #2/A HOH 587 O 0.914 2.246
5kqr-ZINC95539256-2 #1/? UNK 1 N6 5kqr.pdb #2/A HOH 641 O 0.912 1.773
5kqr-ZINC95539256-2 #1/? UNK 1 H39 5kqr.pdb #2/A HOH 477 O 0.910 1.550
5kqr-ZINC95539256-2 #1/? UNK 1 N9 5kqr.pdb #2/A HOH 636 O 0.893 1.792
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A HOH 547 O 0.879 2.281
5kqr-ZINC95539256-2 #1/? UNK 1 H31 5kqr.pdb #2/A HOH 612 O 0.822 1.638
5kqr-ZINC95539256-2 #1/? UNK 1 H28 5kqr.pdb #2/A HOH 494 O 0.812 1.648
5kqr-ZINC95539256-2 #1/? UNK 1 N9 5kqr.pdb #2/A HOH 579 O 0.809 1.876
5kqr-ZINC95539256-2 #1/? UNK 1 C9 5kqr.pdb #2/A HOH 514 O 0.796 2.364
5kqr-ZINC95539256-2 #1/? UNK 1 C30 5kqr.pdb #2/A HOH 612 O 0.769 2.391
5kqr-ZINC95539256-2 #1/? UNK 1 C9 5kqr.pdb #2/A HOH 653 O 0.751 2.409
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A HOH 636 O 0.743 1.942
5kqr-ZINC95539256-2 #1/? UNK 1 H34 5kqr.pdb #2/A HOH 636 O 0.730 1.730
5kqr-ZINC95539256-2 #1/? UNK 1 C17 5kqr.pdb #2/A HOH 653 O 0.719 2.441
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A HOH 515 O 0.719 2.441
5kqr-ZINC95539256-2 #1/? UNK 1 H16 5kqr.pdb #2/A HOH 528 O 0.705 1.755
5kqr-ZINC95539256-2 #1/? UNK 1 C27 5kqr.pdb #2/A HOH 686 O 0.687 2.473
5kqr-ZINC95539256-2 #1/? UNK 1 H25 5kqr.pdb #2/A HOH 587 O 0.684 1.776
5kqr-ZINC95539256-2 #1/? UNK 1 C21 5kqr.pdb #2/A PO4 302 O4 0.673 2.447
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A HOH 477 O 0.669 2.491
5kqr-ZINC95539256-2 #1/? UNK 1 C28 5kqr.pdb #2/A HOH 590 O 0.635 2.525
5kqr-ZINC95539256-2 #1/? UNK 1 C40 5kqr.pdb #2/A HOH 449 O 0.634 2.526
5kqr-ZINC95539256-2 #1/? UNK 1 O4 5kqr.pdb #2/A HOH 423 O 0.614 1.926
5kqr-ZINC95539256-2 #1/? UNK 1 C25 5kqr.pdb #2/A HOH 641 O 0.589 2.571
5kqr-ZINC95539256-2 #1/? UNK 1 O6 5kqr.pdb #2/A HOH 449 O 0.581 1.979
5kqr-ZINC95539256-2 #1/? UNK 1 C12 5kqr.pdb #2/A HOH 528 O 0.579 2.581
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A HOH 477 O 0.564 2.121
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A HOH 459 O 0.557 2.603
5kqr-ZINC95539256-2 #1/? UNK 1 H39 5kqr.pdb #2/A HOH 515 O 0.556 1.904
5kqr-ZINC95539256-2 #1/? UNK 1 HO1 5kqr.pdb #2/A LYS 105 CB 0.530 2.350
5kqr-ZINC95539256-2 #1/? UNK 1 C39 5kqr.pdb #2/A HOH 449 O 0.521 2.639
5kqr-ZINC95539256-2 #1/? UNK 1 H26 5kqr.pdb #2/A HOH 587 O 0.519 1.941
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A HOH 579 O 0.503 2.182
5kqr-ZINC95539256-2 #1/? UNK 1 H35 5kqr.pdb #2/A HOH 612 O 0.487 1.973
5kqr-ZINC95539256-2 #1/? UNK 1 H22 5kqr.pdb #2/A PO4 302 P 0.478 2.622
5kqr-ZINC95539256-2 #1/? UNK 1 C28 5kqr.pdb #2/A HOH 686 O 0.472 2.688
5kqr-ZINC95539256-2 #1/? UNK 1 O3 5kqr.pdb #2/A CL 303 CL 0.470 2.820
5kqr-ZINC95539256-2 #1/? UNK 1 C29 5kqr.pdb #2/A HOH 612 O 0.422 2.738
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A HOH 579 O 0.394 2.766
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A HOH 449 O 0.356 2.204
5kqr-ZINC95539256-2 #1/? UNK 1 H41 5kqr.pdb #2/A HOH 579 O 0.353 2.107
5kqr-ZINC95539256-2 #1/? UNK 1 H9 5kqr.pdb #2/A GLY 83 CA 0.340 2.540
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 579 O 0.338 2.822
5kqr-ZINC95539256-2 #1/? UNK 1 C30 5kqr.pdb #2/A HOH 579 O 0.329 2.831
5kqr-ZINC95539256-2 #1/? UNK 1 N11 5kqr.pdb #2/A CL 303 CL 0.319 3.116
5kqr-ZINC95539256-2 #1/? UNK 1 H28 5kqr.pdb #2/A HOH 459 O 0.311 2.149
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 507 O 0.308 2.852
5kqr-ZINC95539256-2 #1/? UNK 1 H12 5kqr.pdb #2/A HOH 653 O 0.291 2.169
5kqr-ZINC95539256-2 #1/? UNK 1 N9 5kqr.pdb #2/A HOH 612 O 0.278 2.407
5kqr-ZINC95539256-2 #1/? UNK 1 HC2 5kqr.pdb #2/A THR 104 OG1 0.245 2.215
5kqr-ZINC95539256-2 #1/? UNK 1 N11 5kqr.pdb #2/A HOH 641 O 0.222 2.463
5kqr-ZINC95539256-2 #1/? UNK 1 H40 5kqr.pdb #2/A HOH 579 O 0.210 2.250
5kqr-ZINC95539256-2 #1/? UNK 1 H38 5kqr.pdb #2/A HOH 547 O 0.194 2.266
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A HOH 507 O 0.188 2.497
5kqr-ZINC95539256-2 #1/? UNK 1 C37 5kqr.pdb #2/A HOH 686 O 0.186 2.974
5kqr-ZINC95539256-2 #1/? UNK 1 C40 5kqr.pdb #2/A THR 104 OG1 0.184 2.976
5kqr-ZINC95539256-2 #1/? UNK 1 C29 5kqr.pdb #2/A HOH 636 O 0.183 2.977
5kqr-ZINC95539256-2 #1/? UNK 1 HO 5kqr.pdb #2/A GLU 111 CD 0.173 2.707
5kqr-ZINC95539256-2 #1/? UNK 1 H4 5kqr.pdb #2/A ILE 147 CD1 0.163 2.717
5kqr-ZINC95539256-2 #1/? UNK 1 H36 5kqr.pdb #2/A LYS 61 CD 0.156 2.724
5kqr-ZINC95539256-2 #1/? UNK 1 H27 5kqr.pdb #2/A HOH 459 O 0.149 2.311
5kqr-ZINC95539256-2 #1/? UNK 1 C21 5kqr.pdb #2/A PO4 302 P 0.148 3.652
5kqr-ZINC95539256-2 #1/? UNK 1 C11 5kqr.pdb #2/A HOH 653 O 0.139 3.021
5kqr-ZINC95539256-2 #1/? UNK 1 H40 5kqr.pdb #2/A HOH 590 O 0.129 2.331
5kqr-ZINC95539256-2 #1/? UNK 1 O6 5kqr.pdb #2/A LYS 105 CB 0.126 3.254
5kqr-ZINC95539256-2 #1/? UNK 1 H40 5kqr.pdb #2/A SER 212 CA 0.112 2.768
5kqr-ZINC95539256-2 #1/? UNK 1 H27 5kqr.pdb #2/A SER 150 OG 0.108 2.352
5kqr-ZINC95539256-2 #1/? UNK 1 C22 5kqr.pdb #2/A HOH 653 O 0.100 3.060
5kqr-ZINC95539256-2 #1/? UNK 1 C15 5kqr.pdb #2/A HOH 528 O 0.098 3.062
5kqr-ZINC95539256-2 #1/? UNK 1 C6 5kqr.pdb #2/A GLY 83 CA 0.080 3.500
5kqr-ZINC95539256-2 #1/? UNK 1 C27 5kqr.pdb #2/A HOH 423 O 0.073 3.087
5kqr-ZINC95539256-2 #1/? UNK 1 HO 5kqr.pdb #2/A GLU 111 CB 0.062 2.818
5kqr-ZINC95539256-2 #1/? UNK 1 H9 5kqr.pdb #2/A GLY 83 N 0.046 2.594
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A ARG 57 CB (alt loc A) 0.044 3.536
5kqr-ZINC95539256-2 #1/? UNK 1 H3 5kqr.pdb #2/A ASP 131 CA 0.040 2.840
5kqr-ZINC95539256-2 #1/? UNK 1 H26 5kqr.pdb #2/A HOH 641 O 0.035 2.425
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A HOH 477 O 0.033 3.127
5kqr-ZINC95539256-2 #1/? UNK 1 H36 5kqr.pdb #2/A HOH 612 O 0.016 2.444
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A HOH 612 O 0.009 3.151
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 636 O 0.005 3.155
5kqr-ZINC95539256-2 #1/? UNK 1 C24 5kqr.pdb #2/A CL 303 CL -0.003 3.513
5kqr-ZINC95539256-2 #1/? UNK 1 H28 5kqr.pdb #2/A LYS 182 NZ -0.005 2.645
5kqr-ZINC95539256-2 #1/? UNK 1 HC1 5kqr.pdb #2/A HOH 612 O -0.006 2.466
5kqr-ZINC95539256-2 #1/? UNK 1 H39 5kqr.pdb #2/A HOH 507 O -0.009 2.469
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A LEU 211 O -0.013 3.133
5kqr-ZINC95539256-2 #1/? UNK 1 C39 5kqr.pdb #2/A THR 104 OG1 -0.016 3.176
5kqr-ZINC95539256-2 #1/? UNK 1 C22 5kqr.pdb #2/A ARG 57 CB (alt loc A) -0.017 3.597
5kqr-ZINC95539256-2 #1/? UNK 1 C22 5kqr.pdb #2/A PO4 302 O4 -0.025 3.145
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A LYS 61 CD -0.025 3.605
5kqr-ZINC95539256-2 #1/? UNK 1 N6 5kqr.pdb #2/A HOH 494 O -0.034 2.719
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A HOH 612 O -0.038 3.198
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A HOH 587 O -0.044 3.204
5kqr-ZINC95539256-2 #1/? UNK 1 H6 5kqr.pdb #2/A LYS 105 N -0.044 2.684
5kqr-ZINC95539256-2 #1/? UNK 1 C1 5kqr.pdb #2/A LYS 105 CB -0.045 3.625
5kqr-ZINC95539256-2 #1/? UNK 1 H40 5kqr.pdb #2/A LEU 211 O -0.050 2.470
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A HOH 636 O -0.052 3.212
5kqr-ZINC95539256-2 #1/? UNK 1 C2 5kqr.pdb #2/A ILE 147 CD1 -0.053 3.633
5kqr-ZINC95539256-2 #1/? UNK 1 H1 5kqr.pdb #2/A LYS 105 CB -0.053 2.933
5kqr-ZINC95539256-2 #1/? UNK 1 H25 5kqr.pdb #2/A HOH 494 O -0.063 2.523
5kqr-ZINC95539256-2 #1/? UNK 1 H39 5kqr.pdb #2/A GLU 34 CG -0.069 2.949
5kqr-ZINC95539256-2 #1/? UNK 1 N7 5kqr.pdb #2/A HOH 686 O -0.071 2.756
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.071 3.651
5kqr-ZINC95539256-2 #1/? UNK 1 C23 5kqr.pdb #2/A CL 303 CL -0.075 3.585
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A ARG 57 NH1 (alt loc A) -0.087 3.427
5kqr-ZINC95539256-2 #1/? UNK 1 H42 5kqr.pdb #2/A HOH 686 O -0.091 2.551
5kqr-ZINC95539256-2 #1/? UNK 1 C21 5kqr.pdb #2/A ARG 57 CB (alt loc A) -0.094 3.674
5kqr-ZINC95539256-2 #1/? UNK 1 HO 5kqr.pdb #2/A GLU 111 OE1 -0.099 2.119
5kqr-ZINC95539256-2 #1/? UNK 1 H28 5kqr.pdb #2/A HOH 423 O -0.112 2.572
5kqr-ZINC95539256-2 #1/? UNK 1 N7 5kqr.pdb #2/A HOH 494 O -0.121 2.806
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A HOH 547 O -0.121 3.281
5kqr-ZINC95539256-2 #1/? UNK 1 N1 5kqr.pdb #2/A LYS 105 CB -0.126 3.631
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A LEU 211 CD2 -0.130 3.710
5kqr-ZINC95539256-2 #1/? UNK 1 C16 5kqr.pdb #2/A GLY 58 CA -0.132 3.712
5kqr-ZINC95539256-2 #1/? UNK 1 H23 5kqr.pdb #2/A ARG 57 N -0.133 2.773
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.135 3.640
5kqr-ZINC95539256-2 #1/? UNK 1 HC 5kqr.pdb #2/A THR 104 OG1 -0.136 2.596
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A LEU 211 CB -0.137 3.717
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A LEU 211 O -0.139 3.184
5kqr-ZINC95539256-2 #1/? UNK 1 C29 5kqr.pdb #2/A HOH 686 O -0.143 3.303
5kqr-ZINC95539256-2 #1/? UNK 1 H40 5kqr.pdb #2/A HOH 612 O -0.147 2.607
5kqr-ZINC95539256-2 #1/? UNK 1 HO1 5kqr.pdb #2/A LYS 105 CA -0.163 3.043
5kqr-ZINC95539256-2 #1/? UNK 1 N4 5kqr.pdb #2/A HOH 514 O -0.164 2.849
5kqr-ZINC95539256-2 #1/? UNK 1 H16 5kqr.pdb #2/A ARG 84 N -0.165 2.805
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.169 3.749
5kqr-ZINC95539256-2 #1/? UNK 1 C1 5kqr.pdb #2/A ASP 131 CA -0.173 3.753
5kqr-ZINC95539256-2 #1/? UNK 1 C18 5kqr.pdb #2/A HOH 653 O -0.173 3.333
5kqr-ZINC95539256-2 #1/? UNK 1 O1 5kqr.pdb #2/A ILE 147 CG2 -0.177 3.537
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A GLU 111 CB -0.180 3.560
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A ARG 57 CB (alt loc A) -0.181 3.761
5kqr-ZINC95539256-2 #1/? UNK 1 N6 5kqr.pdb #2/A LYS 182 NZ -0.182 3.447
5kqr-ZINC95539256-2 #1/? UNK 1 O1 5kqr.pdb #2/A ILE 147 CG1 -0.189 3.549
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A HOH 636 O -0.189 3.349
5kqr-ZINC95539256-2 #1/? UNK 1 N5 5kqr.pdb #2/A HOH 641 O -0.194 2.879
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.200 3.780
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A SER 212 CA -0.203 3.783
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A LYS 182 NZ -0.205 3.545
5kqr-ZINC95539256-2 #1/? UNK 1 HC 5kqr.pdb #2/A GLY 83 CA -0.209 3.089
5kqr-ZINC95539256-2 #1/? UNK 1 HO 5kqr.pdb #2/A GLU 111 N -0.211 2.851
5kqr-ZINC95539256-2 #1/? UNK 1 C13 5kqr.pdb #2/A SER 56 CB -0.211 3.791
5kqr-ZINC95539256-2 #1/? UNK 1 H6 5kqr.pdb #2/A LYS 105 CB -0.221 3.101
5kqr-ZINC95539256-2 #1/? UNK 1 O6 5kqr.pdb #2/A HIS 110 CB -0.222 3.602
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A GLU 111 CD -0.225 3.605
5kqr-ZINC95539256-2 #1/? UNK 1 H42 5kqr.pdb #2/A ARG 213 CG -0.231 3.111
5kqr-ZINC95539256-2 #1/? UNK 1 H38 5kqr.pdb #2/A LEU 211 CD2 -0.231 3.111
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A SER 150 OG -0.233 3.393
5kqr-ZINC95539256-2 #1/? UNK 1 H36 5kqr.pdb #2/A HOH 547 O -0.233 2.693
5kqr-ZINC95539256-2 #1/? UNK 1 H16 5kqr.pdb #2/A CYS 82 O -0.237 2.657
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A ARG 57 NH1 (alt loc A) -0.237 3.577
5kqr-ZINC95539256-2 #1/? UNK 1 H18 5kqr.pdb #2/A GLY 58 CA -0.250 3.130
5kqr-ZINC95539256-2 #1/? UNK 1 C34 5kqr.pdb #2/A LEU 211 CB -0.256 3.836
5kqr-ZINC95539256-2 #1/? UNK 1 H34 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.262 3.142
5kqr-ZINC95539256-2 #1/? UNK 1 C21 5kqr.pdb #2/A ARG 57 CG (alt loc A) -0.266 3.846
5kqr-ZINC95539256-2 #1/? UNK 1 HC2 5kqr.pdb #2/A HOH 449 O -0.268 2.728
5kqr-ZINC95539256-2 #1/? UNK 1 O2 5kqr.pdb #2/A CL 303 CL -0.269 3.579
5kqr-ZINC95539256-2 #1/? UNK 1 HO1 5kqr.pdb #2/A LYS 105 N -0.270 2.910
5kqr-ZINC95539256-2 #1/? UNK 1 N8 5kqr.pdb #2/A HOH 590 O -0.278 2.963
5kqr-ZINC95539256-2 #1/? UNK 1 C6 5kqr.pdb #2/A GLY 83 N -0.278 3.618
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A HOH 477 O -0.278 3.438
5kqr-ZINC95539256-2 #1/? UNK 1 H23 5kqr.pdb #2/A SER 56 CB -0.284 3.164
5kqr-ZINC95539256-2 #1/? UNK 1 C36 5kqr.pdb #2/A LEU 211 O -0.286 3.406
5kqr-ZINC95539256-2 #1/? UNK 1 C6 5kqr.pdb #2/A GLY 81 O -0.287 3.407
5kqr-ZINC95539256-2 #1/? UNK 1 C31 5kqr.pdb #2/A HOH 547 O -0.297 3.457
5kqr-ZINC95539256-2 #1/? UNK 1 H33 5kqr.pdb #2/A HOH 636 O -0.297 2.757
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.306 3.886
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A GLU 111 OE1 -0.307 2.827
5kqr-ZINC95539256-2 #1/? UNK 1 O1 5kqr.pdb #2/A ILE 147 CD1 -0.308 3.668
5kqr-ZINC95539256-2 #1/? UNK 1 H23 5kqr.pdb #2/A ARG 57 CB (alt loc A) -0.312 3.192
5kqr-ZINC95539256-2 #1/? UNK 1 C22 5kqr.pdb #2/A ARG 57 N -0.315 3.655
5kqr-ZINC95539256-2 #1/? UNK 1 C15 5kqr.pdb #2/A SER 56 OG -0.316 3.476
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.318 3.898
5kqr-ZINC95539256-2 #1/? UNK 1 N1 5kqr.pdb #2/A LYS 105 N -0.319 3.584
5kqr-ZINC95539256-2 #1/? UNK 1 H37 5kqr.pdb #2/A HOH 579 O -0.320 2.780
5kqr-ZINC95539256-2 #1/? UNK 1 N10 5kqr.pdb #2/A HOH 515 O -0.321 3.006
5kqr-ZINC95539256-2 #1/? UNK 1 H3 5kqr.pdb #2/A VAL 130 O -0.323 2.743
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A HOH 515 O -0.323 3.483
5kqr-ZINC95539256-2 #1/? UNK 1 C32 5kqr.pdb #2/A LEU 211 O -0.325 3.445
5kqr-ZINC95539256-2 #1/? UNK 1 C1 5kqr.pdb #2/A VAL 132 N -0.326 3.666
5kqr-ZINC95539256-2 #1/? UNK 1 C12 5kqr.pdb #2/A SER 56 CB -0.328 3.908
5kqr-ZINC95539256-2 #1/? UNK 1 H35 5kqr.pdb #2/A HOH 579 O -0.333 2.793
5kqr-ZINC95539256-2 #1/? UNK 1 H22 5kqr.pdb #2/A ARG 57 CG (alt loc A) -0.333 3.213
5kqr-ZINC95539256-2 #1/? UNK 1 C24 5kqr.pdb #2/A LYS 182 NZ -0.337 3.677
5kqr-ZINC95539256-2 #1/? UNK 1 H26 5kqr.pdb #2/A GLY 148 O -0.340 2.760
5kqr-ZINC95539256-2 #1/? UNK 1 C33 5kqr.pdb #2/A LYS 61 CG -0.341 3.921
5kqr-ZINC95539256-2 #1/? UNK 1 C26 5kqr.pdb #2/A HOH 423 O -0.342 3.502
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A GLU 111 N -0.346 3.086
5kqr-ZINC95539256-2 #1/? UNK 1 O6 5kqr.pdb #2/A LYS 105 CA -0.349 3.729
5kqr-ZINC95539256-2 #1/? UNK 1 O5 5kqr.pdb #2/A GLU 111 CA -0.353 3.733
5kqr-ZINC95539256-2 #1/? UNK 1 H37 5kqr.pdb #2/A ARG 57 O -0.357 2.777
5kqr-ZINC95539256-2 #1/? UNK 1 C14 5kqr.pdb #2/A CYS 82 O -0.357 3.477
5kqr-ZINC95539256-2 #1/? UNK 1 C10 5kqr.pdb #2/A HOH 514 O -0.358 3.518
5kqr-ZINC95539256-2 #1/? UNK 1 C24 5kqr.pdb #2/A HOH 494 O -0.360 3.520
5kqr-ZINC95539256-2 #1/? UNK 1 C16 5kqr.pdb #2/A HOH 653 O -0.361 3.521
5kqr-ZINC95539256-2 #1/? UNK 1 H29 5kqr.pdb #2/A HOH 686 O -0.362 2.422
5kqr-ZINC95539256-2 #1/? UNK 1 H41 5kqr.pdb #2/A LYS 61 NZ -0.367 3.007
5kqr-ZINC95539256-2 #1/? UNK 1 H41 5kqr.pdb #2/A LYS 61 CD -0.370 3.250
5kqr-ZINC95539256-2 #1/? UNK 1 C30 5kqr.pdb #2/A ARG 57 CD (alt loc A) -0.371 3.951
5kqr-ZINC95539256-2 #1/? UNK 1 H23 5kqr.pdb #2/A GLY 58 N -0.376 3.016
5kqr-ZINC95539256-2 #1/? UNK 1 H8 5kqr.pdb #2/A HOH 562 O -0.377 2.837
5kqr-ZINC95539256-2 #1/? UNK 1 H3 5kqr.pdb #2/A VAL 132 N -0.381 3.021
5kqr-ZINC95539256-2 #1/? UNK 1 H37 5kqr.pdb #2/A LYS 61 CG -0.381 3.261
5kqr-ZINC95539256-2 #1/? UNK 1 C20 5kqr.pdb #2/A PO4 302 O4 -0.381 3.501
5kqr-ZINC95539256-2 #1/? UNK 1 H23 5kqr.pdb #2/A ARG 57 CA (alt loc A) -0.383 3.263
5kqr-ZINC95539256-2 #1/? UNK 1 C29 5kqr.pdb #2/A HOH 590 O -0.389 3.549
5kqr-ZINC95539256-2 #1/? UNK 1 C14 5kqr.pdb #2/A ARG 84 N -0.395 3.735
5kqr-ZINC95539256-2 #1/? UNK 1 H11 5kqr.pdb #2/A HOH 514 O -0.398 2.858
5kqr-ZINC95539256-2 #1/? UNK 1 C35 5kqr.pdb #2/A LEU 211 O -0.398 3.518
5kqr-ZINC95539256-2 #1/? UNK 1 H10 5kqr.pdb #2/A ASP 146 OD2 -0.399 2.419
245 contacts
> ~select #1
Nothing selected
> select #2
2326 atoms, 2072 bonds, 558 residues, 1 model selected
> coulombic sel
The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:
5kqr.pdb #2/A GLN 18
5kqr.pdb #2/A ARG 42
5kqr.pdb #2/A LYS 105
5kqr.pdb #2/A LYS 226
5kqr.pdb #2/A LYS 231
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 5kqr.pdb_A SES surface #2.1: minimum, -11.67, mean 1.12,
maximum 18.51
To also show corresponding color key, enter the above coulombic command and
add key true
> open C:\Users\Snyder-
> Walcott\Documents\Research_Projects\MethylTransferase_screening\MethylTransferaseStructures\5kqr.pdb
> format pdb
5kqr.pdb title:
Structure of NS5 methyltransferase from zika virus bound to S-
adenosylmethionine [more info...]
Chain information for 5kqr.pdb #3
---
Chain | Description | UniProt
A | methyltransferase | H9A910_ZIKV
Non-standard residues in 5kqr.pdb #3
---
CL — chloride ion
PO4 — phosphate ion
SAM — S-adenosylmethionine
> select :SAM
27 atoms, 29 bonds, 1 residue, 1 model selected
> close session
> open C:\Users\Snyder-
> Walcott\Documents\Research_Projects\MethylTransferase_screening\95539256_4N49_DRH\docking\pose003.mol2
> format mol2
Opened pose003.mol2 containing 1 structures (104 atoms, 110 bonds)
> ui mousemode right select
Drag select of 5 atoms
> delete atoms sel
> delete bonds sel
> ui tool show "Build Structure"
> addh
Summary of feedback from adding hydrogens to 3elw-ZINC95539256-1 #1
---
notes | Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini:
2 hydrogen bonds
5 hydrogens added
> open C:\Users\Snyder-
> Walcott\Documents\Research_Projects\MethylTransferase_screening\MethylTransferaseStructures\4n49.pdb
> format pdb
4n49.pdb title:
Cap-specific MRNA (nucleoside-2'-O-)-methyltransferase 1 protein In complex
with M7GPPPG and sam [more info...]
Chain information for 4n49.pdb #2
---
Chain | Description | UniProt
A | cap-specific MRNA (nucleoside-2'-O-)-methyltransferase 1 | MTR1_HUMAN
Non-standard residues in 4n49.pdb #2
---
MGT — 7N-methyl-8-hydroguanosine-5'-triphosphate
NA — sodium ion
SAM — S-adenosylmethionine
> select #2
3823 atoms, 3358 bonds, 2 pseudobonds, 947 residues, 3 models selected
> coulombic sel
The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:
4n49.pdb #2/A GLU 148
4n49.pdb #2/A GLU 160
4n49.pdb #2/A LYS 264
4n49.pdb #2/A LYS 309
4n49.pdb #2/A GLU 425
4n49.pdb #2/A GLU 530
4n49.pdb #2/A LYS 533
4n49.pdb #2/A VAL 547
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 4n49.pdb_A SES surface #2.3: minimum, -20.35, mean -2.94,
maximum 11.24
To also show corresponding color key, enter the above coulombic command and
add key true
> select :SAM
27 atoms, 29 bonds, 1 residue, 1 model selected
> delete atoms sel
> delete bonds sel
> mlp
Map values for surface "4n49.pdb_A SES surface": minimum -29.27, mean -5.138,
maximum 22.06
To also show corresponding color key, enter the above mlp command and add key
true
> select #1
104 atoms, 110 bonds, 1 residue, 1 model selected
> ui tool show Contacts
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 NVIDIA 471.35
OpenGL renderer: NVIDIA GeForce GTX 1660 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: G7 7500
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,929,984,512
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-10750H CPU @ 2.60GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using QFileDialog.getSaveFileName |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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1.3