![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7505 closed defect (can't reproduce)
Crash destroying tool
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000000318bfc000 (most recent call first):
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000002048bc600 (most recent call first):
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2317 in destroy
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 2185 in _destroy
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 807 in remove_tool
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 370 in remove_tool
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/tools.py", line 154 in delete
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/dr/n_lp31fx58q_l53bm1fx0vkw0000gn/T/AppTranslocation/239A3ACF-9D85-4064-BE4F-D17CF6BC003F/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 370000,
"procLaunch" : "2022-08-25 10:14:25.5533 -0400",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"procStartAbsTime" : 8981286903674,
"coalitionID" : 3693,
"osVersion" : {
"train" : "macOS 12.4",
"build" : "21F79",
"releaseType" : "User"
},
"captureTime" : "2022-08-25 10:19:34.7976 -0400",
"incident" : "502AA2D2-1956-482D-A62D-53DED0229E32",
"bug_type" : "309",
"pid" : 35955,
"procExitAbsTime" : 8988692596729,
"translated" : true,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"F670C117-AF37-58D2-9FFB-6C7CC87333C6","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F5CF1F57-A60C-6341-8943-4CB0F7A3222C",
"wakeTime" : 1349,
"sleepWakeUUID" : "B445C557-7126-4EBE-99FB-F4C330C60DDD",
"sip" : "enabled",
"vmRegionInfo" : "0x4e9d0647ea68 is not in any region. Bytes after previous region: 85955285871209 Bytes before following region: 19116794058136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL ...(unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600008000000 [128.0M] rw-\/rwx SM=PRV ",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x00004e9d0647ea68","rawCodes":[1,86436322208360],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00004e9d0647ea68"},
"ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\n",
"vmregioninfo" : "0x4e9d0647ea68 is not in any region. Bytes after previous region: 85955285871209 Bytes before following region: 19116794058136\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL ...(unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600008000000 [128.0M] rw-\/rwx SM=PRV ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "61301e3a61217b3110231469",
"factorPackIds" : {
"SIRI_FIND_MY_CONFIGURATION_FILES" : "6216ae152a40e71046e16225"
},
"deploymentId" : 240000016
},
{
"rolloutId" : "60186475825c62000ccf5450",
"factorPackIds" : {
},
"deploymentId" : 240000025
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0054.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0054.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.4484
Ignored bad PDB record found on line 10077
Irms 6.12683
Ignored bad PDB record found on line 10078
Irms_leg 5.71652
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0054.pdb #1
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0177.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0177.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -25.2512
Ignored bad PDB record found on line 10077
Irms 5.41291
Ignored bad PDB record found on line 10078
Irms_leg 4.91299
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0177.pdb #2
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0266.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0266.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.7383
Ignored bad PDB record found on line 10077
Irms 6.02213
Ignored bad PDB record found on line 10078
Irms_leg 5.61775
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0266.pdb #3
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0537.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0537.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -25.2748
Ignored bad PDB record found on line 10077
Irms 5.31519
Ignored bad PDB record found on line 10078
Irms_leg 4.86294
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0537.pdb #4
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0720.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0720.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.2916
Ignored bad PDB record found on line 10077
Irms 7.76335
Ignored bad PDB record found on line 10078
Irms_leg 7.1371
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0720.pdb #5
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1123.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1123.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -18.2003
Ignored bad PDB record found on line 10077
Irms 5.13707
Ignored bad PDB record found on line 10078
Irms_leg 4.76366
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1123.pdb #6
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1243.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1243.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -30.4301
Ignored bad PDB record found on line 10077
Irms 8.39003
Ignored bad PDB record found on line 10078
Irms_leg 8.03577
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1243.pdb #7
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1339.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1339.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -29.9116
Ignored bad PDB record found on line 10077
Irms 5.95741
Ignored bad PDB record found on line 10078
Irms_leg 5.41462
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1339.pdb #8
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1378.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1378.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -27.0265
Ignored bad PDB record found on line 10077
Irms 5.88157
Ignored bad PDB record found on line 10078
Irms_leg 5.30735
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1378.pdb #9
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1629.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1629.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -32.7001
Ignored bad PDB record found on line 10077
Irms 8.27054
Ignored bad PDB record found on line 10078
Irms_leg 8.27674
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1629.pdb #10
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2391.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2391.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -19.2102
Ignored bad PDB record found on line 10077
Irms 5.93932
Ignored bad PDB record found on line 10078
Irms_leg 5.54298
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2391.pdb #11
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2452.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2452.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -32.2212
Ignored bad PDB record found on line 10077
Irms 5.39772
Ignored bad PDB record found on line 10078
Irms_leg 4.87943
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2452.pdb #12
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2559.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2559.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.552
Ignored bad PDB record found on line 10077
Irms 7.82129
Ignored bad PDB record found on line 10078
Irms_leg 7.83722
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2559.pdb #13
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2561.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2561.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -17.161
Ignored bad PDB record found on line 10077
Irms 5.8375
Ignored bad PDB record found on line 10078
Irms_leg 5.43279
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2561.pdb #14
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2622.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2622.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -17.6174
Ignored bad PDB record found on line 10077
Irms 7.98033
Ignored bad PDB record found on line 10078
Irms_leg 7.33275
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2622.pdb #15
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2636.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2636.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -22.303
Ignored bad PDB record found on line 10077
Irms 6.42605
Ignored bad PDB record found on line 10078
Irms_leg 5.94535
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2636.pdb #16
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2709.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2709.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -31.9344
Ignored bad PDB record found on line 10077
Irms 5.95478
Ignored bad PDB record found on line 10078
Irms_leg 5.38369
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2709.pdb #17
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0310.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0310.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -21.5663
Ignored bad PDB record found on line 10077
Irms 5.41372
Ignored bad PDB record found on line 10078
Irms_leg 5.01688
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0310.pdb #18
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0464.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0464.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -24.5305
Ignored bad PDB record found on line 10077
Irms 5.34968
Ignored bad PDB record found on line 10078
Irms_leg 4.86842
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0464.pdb #19
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0599.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0599.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.3885
Ignored bad PDB record found on line 10077
Irms 6.09795
Ignored bad PDB record found on line 10078
Irms_leg 5.69802
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0599.pdb #20
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0730.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0730.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -17.5102
Ignored bad PDB record found on line 10077
Irms 5.8309
Ignored bad PDB record found on line 10078
Irms_leg 5.4193
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0730.pdb #21
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0943.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0943.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -30.2362
Ignored bad PDB record found on line 10077
Irms 8.20524
Ignored bad PDB record found on line 10078
Irms_leg 7.85032
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0943.pdb #22
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1329.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1329.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.8928
Ignored bad PDB record found on line 10077
Irms 5.98184
Ignored bad PDB record found on line 10078
Irms_leg 5.57376
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1329.pdb #23
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1500.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1500.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -14.7713
Ignored bad PDB record found on line 10077
Irms 7.29383
Ignored bad PDB record found on line 10078
Irms_leg 7.1941
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1500.pdb #24
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1515.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1515.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -17.9263
Ignored bad PDB record found on line 10077
Irms 8.90297
Ignored bad PDB record found on line 10078
Irms_leg 8.48147
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1515.pdb #25
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1593.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1593.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.3538
Ignored bad PDB record found on line 10077
Irms 6.10679
Ignored bad PDB record found on line 10078
Irms_leg 5.69785
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1593.pdb #26
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1812.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1812.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -27.8889
Ignored bad PDB record found on line 10077
Irms 5.32422
Ignored bad PDB record found on line 10078
Irms_leg 4.83411
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1812.pdb #27
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1875.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1875.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -14.1878
Ignored bad PDB record found on line 10077
Irms 7.23028
Ignored bad PDB record found on line 10078
Irms_leg 7.12984
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1875.pdb #28
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2099.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2099.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -36.63
Ignored bad PDB record found on line 10077
Irms 9.82311
Ignored bad PDB record found on line 10078
Irms_leg 9.28987
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2099.pdb #29
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2165.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2165.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -22.1938
Ignored bad PDB record found on line 10077
Irms 8.05456
Ignored bad PDB record found on line 10078
Irms_leg 7.4086
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2165.pdb #30
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2294.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2294.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0566038
Ignored bad PDB record found on line 10076
I_sc -19.5596
Ignored bad PDB record found on line 10077
Irms 8.40491
Ignored bad PDB record found on line 10078
Irms_leg 8.40839
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2294.pdb #31
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2852.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2852.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -26.8557
Ignored bad PDB record found on line 10077
Irms 5.89061
Ignored bad PDB record found on line 10078
Irms_leg 5.34259
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2852.pdb #32
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2916.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2916.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0754717
Ignored bad PDB record found on line 10076
I_sc -26.0365
Ignored bad PDB record found on line 10077
Irms 8.94514
Ignored bad PDB record found on line 10078
Irms_leg 8.95865
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2916.pdb #33
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0421.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0421.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -30.9836
Ignored bad PDB record found on line 10077
Irms 5.81386
Ignored bad PDB record found on line 10078
Irms_leg 5.2765
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0421.pdb #34
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0531.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0531.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -28.2369
Ignored bad PDB record found on line 10077
Irms 5.27748
Ignored bad PDB record found on line 10078
Irms_leg 4.80288
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0531.pdb #35
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1155.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1155.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.2226
Ignored bad PDB record found on line 10077
Irms 6.17461
Ignored bad PDB record found on line 10078
Irms_leg 5.74869
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1155.pdb #36
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1320.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1320.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -16.5968
Ignored bad PDB record found on line 10077
Irms 5.89148
Ignored bad PDB record found on line 10078
Irms_leg 5.48714
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1320.pdb #37
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2625.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2625.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -31.4627
Ignored bad PDB record found on line 10077
Irms 8.56571
Ignored bad PDB record found on line 10078
Irms_leg 8.60889
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2625.pdb #38
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1074.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1074.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -32.8483
Ignored bad PDB record found on line 10077
Irms 8.43726
Ignored bad PDB record found on line 10078
Irms_leg 8.44508
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1074.pdb #39
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1397.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1397.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -32.8327
Ignored bad PDB record found on line 10077
Irms 8.40382
Ignored bad PDB record found on line 10078
Irms_leg 8.41676
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1397.pdb #40
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0580.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0580.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -23.5913
Ignored bad PDB record found on line 10077
Irms 6.53106
Ignored bad PDB record found on line 10078
Irms_leg 6.04504
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0580.pdb #41
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1620.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1620.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -23.8257
Ignored bad PDB record found on line 10077
Irms 5.25764
Ignored bad PDB record found on line 10078
Irms_leg 4.78001
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1620.pdb #42
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0702.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0702.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -25.2993
Ignored bad PDB record found on line 10077
Irms 13.1474
Ignored bad PDB record found on line 10078
Irms_leg 13.2403
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0702.pdb #43
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0890.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0890.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -24.5299
Ignored bad PDB record found on line 10077
Irms 7.71677
Ignored bad PDB record found on line 10078
Irms_leg 7.35492
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0890.pdb #44
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1409.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1409.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0377358
Ignored bad PDB record found on line 10076
I_sc -25.5341
Ignored bad PDB record found on line 10077
Irms 5.70466
Ignored bad PDB record found on line 10078
Irms_leg 5.15575
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1409.pdb #45
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1463.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1463.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -24.3762
Ignored bad PDB record found on line 10077
Irms 8.24176
Ignored bad PDB record found on line 10078
Irms_leg 8.1749
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1463.pdb #46
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1579.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1579.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -24.602
Ignored bad PDB record found on line 10077
Irms 8.20017
Ignored bad PDB record found on line 10078
Irms_leg 8.11889
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1579.pdb #47
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1667.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1667.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -25.3962
Ignored bad PDB record found on line 10077
Irms 8.64326
Ignored bad PDB record found on line 10078
Irms_leg 8.56779
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1667.pdb #48
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1708.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1708.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -25.3387
Ignored bad PDB record found on line 10077
Irms 11.0651
Ignored bad PDB record found on line 10078
Irms_leg 10.4894
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1708.pdb #49
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2366.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2366.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0943396
Ignored bad PDB record found on line 10076
I_sc -25.0819
Ignored bad PDB record found on line 10077
Irms 5.61003
Ignored bad PDB record found on line 10078
Irms_leg 4.97122
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2366.pdb #50
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2795.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2795.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -25.2309
Ignored bad PDB record found on line 10077
Irms 11.2802
Ignored bad PDB record found on line 10078
Irms_leg 10.9561
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2795.pdb #51
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2816.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2816.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -23.8364
Ignored bad PDB record found on line 10077
Irms 10.3266
Ignored bad PDB record found on line 10078
Irms_leg 10.0789
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2816.pdb #52
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0924.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0924.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -25.5653
Ignored bad PDB record found on line 10077
Irms 9.74976
Ignored bad PDB record found on line 10078
Irms_leg 9.2562
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0924.pdb #53
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0487.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0487.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -27.8082
Ignored bad PDB record found on line 10077
Irms 6.10743
Ignored bad PDB record found on line 10078
Irms_leg 5.52786
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0487.pdb #54
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0822.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0822.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -26.5127
Ignored bad PDB record found on line 10077
Irms 7.78307
Ignored bad PDB record found on line 10078
Irms_leg 7.42792
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0822.pdb #55
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1564.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1564.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -28.6386
Ignored bad PDB record found on line 10077
Irms 6.09316
Ignored bad PDB record found on line 10078
Irms_leg 5.51986
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1564.pdb #56
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1602.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1602.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -28.0182
Ignored bad PDB record found on line 10077
Irms 5.31428
Ignored bad PDB record found on line 10078
Irms_leg 4.78246
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1602.pdb #57
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2279.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2279.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -27.0037
Ignored bad PDB record found on line 10077
Irms 16.8055
Ignored bad PDB record found on line 10078
Irms_leg 16.5519
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2279.pdb #58
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0900.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0900.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -32.1311
Ignored bad PDB record found on line 10077
Irms 8.37222
Ignored bad PDB record found on line 10078
Irms_leg 8.3871
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0900.pdb #59
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1697.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_1697.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -31.401
Ignored bad PDB record found on line 10077
Irms 10.5016
Ignored bad PDB record found on line 10078
Irms_leg 9.89735
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_1697.pdb #60
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2411.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_2411.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0.0188679
Ignored bad PDB record found on line 10076
I_sc -30.4303
Ignored bad PDB record found on line 10077
Irms 5.79844
Ignored bad PDB record found on line 10078
Irms_leg 5.21249
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_2411.pdb #61
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
> select #*/H
196115 atoms, 198677 bonds, 61 pseudobonds, 13176 residues, 122 models
selected
> color (#!1-61 & sel) light gray
> select #*/L
196725 atoms, 198860 bonds, 13054 residues, 61 models selected
> color sel dim gray
> select #*/d,e
220088 atoms, 222406 bonds, 14091 residues, 61 models selected
> show sel surfaces
> select #*/e
117120 atoms, 118523 bonds, 7503 residues, 61 models selected
> ui tool show "Color Actions"
> color sel light pink
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0054.pdb
Summary of feedback from opening
/Users/qiaofang/Desktop/Top_100_3giz/CD3de_3giz_0001_0054.pdb
---
warnings | Ignored bad PDB record found on line 10074
CAPRI_rank 0
Ignored bad PDB record found on line 10075
Fnat 0
Ignored bad PDB record found on line 10076
I_sc -16.4484
Ignored bad PDB record found on line 10077
Irms 6.12683
Ignored bad PDB record found on line 10078
Irms_leg 5.71652
676 messages similar to the above omitted
Chain information for CD3de_3giz_0001_0054.pdb #1
---
Chain | Description
H | No description available
L | No description available
d | No description available
e | No description available
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache: 8 MB
Memory: 8 GB
Software:
System Software Overview:
System Version: macOS 12.4 (21F79)
Kernel Version: Darwin 21.5.0
Time since boot: 23 days 22:04
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash destroying tool |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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