Opened 3 years ago

Closed 3 years ago

#7519 closed defect (can't reproduce)

Mismatch between Cocoa and Carbon for virtual key

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Window Toolkit Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x000000010a779600 (most recent call first):
  File "/Users/gaojieyu/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/Users/gaojieyu/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/Users/gaojieyu/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/Users/gaojieyu/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Users/gaojieyu/Desktop/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


{"app_name":"ChimeraX","timestamp":"2022-08-26 17:36:13.00 -0400","app_version":"1.4.0","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"1.4.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.5.1 (21G83)","incident_id":"6A14BF8A-1EB6-4565-B57B-745B3DEFE605","name":"ChimeraX"}
{
  "uptime" : 150000,
  "procLaunch" : "2022-08-26 16:58:09.8860 -0400",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro16,2",
  "procStartAbsTime" : 149736125779739,
  "coalitionID" : 15712,
  "osVersion" : {
    "train" : "macOS 12.5.1",
    "build" : "21G83",
    "releaseType" : "User"
  },
  "captureTime" : "2022-08-26 17:36:13.0722 -0400",
  "incident" : "6A14BF8A-1EB6-4565-B57B-745B3DEFE605",
  "bug_type" : "309",
  "pid" : 22184,
  "procExitAbsTime" : 151830921313291,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"22E35AEF-2DED-58BB-8C3E-160F4F986DC6","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "D83B9353-741E-879B-0C74-F3B785A7F01E",
  "wakeTime" : 329,
  "bridgeVersion" : {"build":"19P6066","train":"6.6"},
  "sleepWakeUUID" : "70FF21F1-5FC5-4DD3-AC44-3BB072DACEDB",
  "sip" : "enabled",
  "vmRegionInfo" : "0x18 is not in any region.  Bytes before following region: 140737486946280\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      VM_ALLOCATE              7fffffea8000-7fffffea9000 [    4K] r-x\/r-x SM=ALI  ",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
  "vmregioninfo" : "0x18 is not in any region.  Bytes before following region: 140737486946280\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      VM_ALLOCATE              7fffffea8000-7fffffea9000 [    4K] r-x\/r-x SM=ALI  ",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[65,86,83,72,137,251,72,141,5,39,116,92,0,72,137,7,76,139,119,16,77,133,246,116,24,65,131,126,16,0,116,9,73,141,126,16,232,105,176,83,0,76,137,247,232,35,196,83,0,72,137,223,232,19,195,255,255,72,137,223,91,65,94,93,233,15,196,83,0,15,31,128,0,0,0,0,85,72,137,229,93,195,102,46,15,31,132,0,0,0,0,0,85,72,137,229,72,139,79,8,72,141,65,240,72,133,201,72,15,68,193,93,195,102,46,15,31,132,0,0,0,0,0,144,85,72,137,229,83,80,72,137,251,72,139,71,8,72,141,120,240,72,133,192,72,15,68,248,49,246,232,161,22,1,0,72,133,192,116,36,72,139,67,8,72,141,120,240,72,133,192,72,15,68,248,49,246,232,134,22,1,0,72,137,199,72,131,196,8,91,93,233],"offset":96}},"frames":[{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":0},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":1},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":2},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":3},{"imageOffset":0,"imageIndex":4},{"imageOffset":474743,"imageIndex":5},{"imageOffset":10494655,"symbol":"-[NSTextInputContext(NSInputContext_WithCompletion) attributedSubstringForProposedRange:completionHandler:]","symbolLocation":139,"imageIndex":6},{"imageOffset":10483041,"symbol":"__55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke_4.556","symbolLocation":85,"imageIndex":6},{"imageOffset":10466442,"symbol":"__194-[NSTextInputContext tryHandleTSMEvent_attributedString_attributedSubstringForProposedRange_withContext:dispatchCondition:dispatchWork:dispatchFurtherCondition:dispatchFurtherWork:continuation:]_block_invoke","symbolLocation":118,"imageIndex":6},{"imageOffset":10482921,"symbol":"__55-[NSTextInputContext handleTSMEvent:completionHandler:]_block_invoke.551","symbolLocation":74,"imageIndex":6},{"imageOffset":10466181,"symbol":"-[NSTextInputContext tryHandleTSMEvent_attributedString_attributedSubstringForProposedRange_withContext:dispatchCondition:dispatchWork:dispatchFurtherCondition:dispatchFurtherWork:continuation:]","symbolLocation":157,"imageIndex":6},{"imageOffset":2409609,"symbol":"-[NSTextInputContext handleTSMEvent:completionHandler:]","symbolLocation":3480,"imageIndex":6},{"imageOffset":2406016,"symbol":"_NSTSMEventHandler","symbolLocation":299,"imageIndex":6},{"imageOffset":33613,"symbol":"DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*)","symbolLocation":1365,"imageIndex":7},{"imageOffset":30620,"symbol":"SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*)","symbolLocation":333,"imageIndex":7},{"imageOffset":30269,"symbol":"SendEventToEventTargetWithOptions","symbolLocation":45,"imageIndex":7},{"imageOffset":403427,"symbol":"SendTSMEvent_WithCompletionHandler","symbolLocation":442,"imageIndex":7},{"imageOffset":2165131,"symbol":"TrySendTextInput_SendEvent_WithContinuationHandler","symbolLocation":402,"imageIndex":7},{"imageOffset":2159074,"symbol":"SendTextInputEvent_WithCompletionHandler","symbolLocation":1175,"imageIndex":7},{"imageOffset":2556705,"symbol":"-[IMKInputSession _postEvent:completionHandler:]","symbolLocation":156,"imageIndex":7},{"imageOffset":2633834,"symbol":"-[IMKInputSession _copyUniCharsForRange:intoBuffer:ofLength:completionHandler:]","symbolLocation":481,"imageIndex":7},{"imageOffset":2635599,"symbol":"-[IMKInputSession _coreAttributesFromRange:whichAttributes:completionHandler:]","symbolLocation":289,"imageIndex":7},{"imageOffset":2642736,"symbol":"-[IMKInputSession attributedSubstringFromRange:completionHandler:]","symbolLocation":210,"imageIndex":7},{"imageOffset":2566283,"symbol":"__61-[IMKInputSession imkxpc_attributedSubstringFromRange:reply:]_block_invoke","symbolLocation":485,"imageIndex":7},{"imageOffset":523585,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_BLOCK__","symbolLocation":12,"imageIndex":8},{"imageOffset":523244,"symbol":"__CFRunLoopDoBlocks","symbolLocation":445,"imageIndex":8},{"imageOffset":518298,"symbol":"__CFRunLoopRun","symbolLocation":878,"imageIndex":8},{"imageOffset":515692,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":8},{"imageOffset":189926,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":7},{"imageOffset":188947,"symbol":"ReceiveNextEventCommon","symbolLocation":283,"imageIndex":7},{"imageOffset":188645,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":70,"imageIndex":7},{"imageOffset":257965,"symbol":"_DPSNextEvent","symbolLocation":927,"imageIndex":6},{"imageOffset":251498,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1394,"imageIndex":6},{"imageOffset":195865,"symbol":"-[NSApplication run]","symbolLocation":586,"imageIndex":6},{"imageOffset":103564,"imageIndex":5},{"imageOffset":480534,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":9},{"imageOffset":443365,"symbol":"QCoreApplication::exec()","symbolLocation":133,"imageIndex":9},{"imageOffset":2271498,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":90,"imageIndex":10},{"imageOffset":517917,"symbol":"cfunction_call","symbolLocation":125,"imageIndex":11},{"imageOffset":259511,"symbol":"_PyObject_MakeTpCall","symbolLocation":359,"imageIndex":11},{"imageOffset":1146524,"symbol":"call_function","symbolLocation":876,"imageIndex":11},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":11},{"imageOffset":261416,"symbol":"function_code_fastcall","symbolLocation":104,"imageIndex":11},{"imageOffset":269674,"symbol":"method_vectorcall","symbolLocation":202,"imageIndex":11},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":11},{"imageOffset":1135266,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25554,"imageIndex":11},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":11},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":11},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":11},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":11},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":11},{"imageOffset":1109419,"symbol":"PyEval_EvalCode","symbolLocation":139,"imageIndex":11},{"imageOffset":1096722,"symbol":"builtin_exec","symbolLocation":626,"imageIndex":11},{"imageOffset":516131,"symbol":"cfunction_vectorcall_FASTCALL","symbolLocation":195,"imageIndex":11},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":11},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":11},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":11},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":11},{"imageOffset":1146380,"symbol":"call_function","symbolLocation":732,"imageIndex":11},{"imageOffset":1135435,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":25723,"imageIndex":11},{"imageOffset":1149699,"symbol":"_PyEval_EvalCode","symbolLocation":2611,"imageIndex":11},{"imageOffset":261297,"symbol":"_PyFunction_Vectorcall","symbolLocation":289,"imageIndex":11},{"imageOffset":1566832,"symbol":"pymain_run_module","symbolLocation":208,"imageIndex":11},{"imageOffset":1564551,"symbol":"Py_RunMain","symbolLocation":1431,"imageIndex":11},{"imageOffset":1566095,"symbol":"pymain_main","symbolLocation":223,"imageIndex":11},{"imageOffset":1565851,"symbol":"Py_Main","symbolLocation":43,"imageIndex":11},{"imageOffset":3528,"symbol":"main","symbolLocation":120,"imageIndex":12},{"imageOffset":21806,"symbol":"start","symbolLocation":462,"imageIndex":13}],"id":1660775,"triggered":true,"threadState":{"r13":{"value":140702043118248},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":140378400710472},"cr2":{"value":140378400710472},"rdx":{"value":0},"r10":{"value":4470576640,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":17568622927624893602},"r15":{"value":22},"rbx":{"value":4470576640,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703292780558,"matchesCrashFrame":1},"rbp":{"value":140378400707648},"rsp":{"value":140378400707608},"r12":{"value":259},"rcx":{"value":140378400707608},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":1660782,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660783,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660784,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3347615,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":14},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660820,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66463178,"imageIndex":15},{"imageOffset":66462919,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":65964109,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660822,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66017292,"imageIndex":15},{"imageOffset":66016125,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660823,"name":"Chrome_IOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66463178,"imageIndex":15},{"imageOffset":66462919,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":48397874,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660824,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660828,"name":"CompositorTileWorker1","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":66226363,"imageIndex":15},{"imageOffset":100635997,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660829,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660830,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66463178,"imageIndex":15},{"imageOffset":66462919,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660831,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660832,"name":"VizCompositorThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":65429544,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660838,"name":"NetworkService","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66463178,"imageIndex":15},{"imageOffset":66462919,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660839,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660840,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66017292,"imageIndex":15},{"imageOffset":66016365,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660867,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660881,"name":"com.apple.NSEventThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":40812,"symbol":"CGSSnarfAndDispatchDatagrams","symbolLocation":152,"imageIndex":16},{"imageOffset":2952798,"symbol":"SLSGetNextEventRecordInternal","symbolLocation":258,"imageIndex":16},{"imageOffset":1165053,"symbol":"SLEventCreateNextEvent","symbolLocation":9,"imageIndex":16},{"imageOffset":241944,"symbol":"PullEventsFromWindowServerOnConnection(unsigned int, unsigned char, __CFMachPortBoost*)","symbolLocation":268,"imageIndex":7},{"imageOffset":241621,"symbol":"MessageHandler(__CFMachPort*, void*, long, void*)","symbolLocation":48,"imageIndex":7},{"imageOffset":709968,"symbol":"__CFMachPortPerform","symbolLocation":250,"imageIndex":8},{"imageOffset":526676,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__","symbolLocation":41,"imageIndex":8},{"imageOffset":526388,"symbol":"__CFRunLoopDoSource1","symbolLocation":619,"imageIndex":8},{"imageOffset":519835,"symbol":"__CFRunLoopRun","symbolLocation":2415,"imageIndex":8},{"imageOffset":515692,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":8},{"imageOffset":1755598,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":6},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660883,"name":"MemoryInfra","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66258831,"imageIndex":15},{"imageOffset":65429641,"imageIndex":15},{"imageOffset":65925532,"imageIndex":15},{"imageOffset":65630200,"imageIndex":15},{"imageOffset":66065496,"imageIndex":15},{"imageOffset":66065898,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1660884,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66016570,"imageIndex":15},{"imageOffset":66016173,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1675499,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66017292,"imageIndex":15},{"imageOffset":66016269,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1685084,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66017292,"imageIndex":15},{"imageOffset":66016269,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1685088,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66259398,"imageIndex":15},{"imageOffset":66014559,"imageIndex":15},{"imageOffset":66017292,"imageIndex":15},{"imageOffset":66016125,"imageIndex":15},{"imageOffset":66229416,"imageIndex":15},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":1685867,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":1685969,"queue":"NSCGSDisableUpdates","frames":[{"imageOffset":6606,"symbol":"semaphore_timedwait_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":14408,"symbol":"_dispatch_sema4_timedwait","symbolLocation":72,"imageIndex":17},{"imageOffset":15477,"symbol":"_dispatch_semaphore_wait_slow","symbolLocation":58,"imageIndex":17},{"imageOffset":389422,"symbol":"CGSUpdateManager::enable_updates_common()","symbolLocation":1038,"imageIndex":16},{"imageOffset":392062,"symbol":"SLSReenableUpdateTokenWithSeed","symbolLocation":130,"imageIndex":16},{"imageOffset":8396,"symbol":"_dispatch_call_block_and_release","symbolLocation":12,"imageIndex":17},{"imageOffset":13079,"symbol":"_dispatch_client_callout","symbolLocation":8,"imageIndex":17},{"imageOffset":37655,"symbol":"_dispatch_lane_serial_drain","symbolLocation":672,"imageIndex":17},{"imageOffset":40445,"symbol":"_dispatch_lane_invoke","symbolLocation":366,"imageIndex":17},{"imageOffset":81646,"symbol":"_dispatch_workloop_worker_thread","symbolLocation":753,"imageIndex":17},{"imageOffset":12240,"symbol":"_pthread_wqthread","symbolLocation":326,"imageIndex":1},{"imageOffset":8023,"symbol":"start_wqthread","symbolLocation":15,"imageIndex":1}]},{"id":1686005,"queue":"com.apple.SkyLight.UpdateManager.SerialSema","frames":[{"imageOffset":6582,"symbol":"semaphore_wait_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":389951,"symbol":"invocation function for block in (anonymous namespace)::InterprocessSerialSemaphore::asyncWait(void (int) block_pointer)","symbolLocation":35,"imageIndex":16},{"imageOffset":8396,"symbol":"_dispatch_call_block_and_release","symbolLocation":12,"imageIndex":17},{"imageOffset":13079,"symbol":"_dispatch_client_callout","symbolLocation":8,"imageIndex":17},{"imageOffset":37655,"symbol":"_dispatch_lane_serial_drain","symbolLocation":672,"imageIndex":17},{"imageOffset":40445,"symbol":"_dispatch_lane_invoke","symbolLocation":366,"imageIndex":17},{"imageOffset":81646,"symbol":"_dispatch_workloop_worker_thread","symbolLocation":753,"imageIndex":17},{"imageOffset":12240,"symbol":"_pthread_wqthread","symbolLocation":326,"imageIndex":1},{"imageOffset":8023,"symbol":"start_wqthread","symbolLocation":15,"imageIndex":1}]}],
  "usedImages" : [
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703292747776,
    "size" : 229376,
    "uuid" : "792406fe-2224-3c14-ba9f-f076fd7839d2",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703292977152,
    "size" : 49152,
    "uuid" : "f32b6d06-b156-3da0-b086-a31cf011362b",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703291731968,
    "size" : 561152,
    "uuid" : "e8499aa8-6800-372f-bd48-82846d88c6cb",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703293075456,
    "size" : 40960,
    "uuid" : "bd2bd848-f9c9-35ff-9795-32d31977523d",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4467253248,
    "size" : 655360,
    "uuid" : "009cdea9-f1bc-35e0-bf0e-099d3df37399",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
    "name" : "libqcocoa.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703337828352,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 15269888,
    "uuid" : "bcb46e9b-acd5-3b26-878f-a3988bc5df7e",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2113.60.148"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703441133568,
    "CFBundleShortVersionString" : "2.1.1",
    "CFBundleIdentifier" : "com.apple.HIToolbox",
    "size" : 3096576,
    "uuid" : "95eab511-8fc1-353a-ac8a-26aa19032e2e",
    "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    "name" : "HIToolbox"
  },
  {
    "source" : "P",
    "arch" : "x86_64h",
    "base" : 140703293292544,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5255168,
    "uuid" : "c39123bf-9d62-3577-a11f-0a97cc4d9991",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1866"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4375826432,
    "size" : 5226496,
    "uuid" : "97d356c9-7652-3ff7-be10-198e30670243",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
    "name" : "QtCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4364627968,
    "size" : 2818048,
    "uuid" : "0a164d84-8b44-3f10-9065-1d0486c25a4b",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
    "name" : "QtWidgets.abi3.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4310478848,
    "CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
    "CFBundleIdentifier" : "org.python.python",
    "size" : 2527232,
    "uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
    "name" : "Python",
    "CFBundleVersion" : "3.9.11"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4305657856,
    "CFBundleShortVersionString" : "1.4.0",
    "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
    "size" : 4096,
    "uuid" : "9596eff5-d2be-396c-9c4e-6177235c3dae",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX",
    "CFBundleVersion" : "1.4.0.0"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4470050816,
    "size" : 442368,
    "uuid" : "f71fb3ca-5fcc-3577-9457-b047888a46d1",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4391108608,
    "size" : 63488000,
    "uuid" : "10431d8f-5e3b-3bbc-abd5-81f6a73a5269",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4784889856,
    "size" : 165068800,
    "uuid" : "c9795830-14cd-3b40-983d-a3143cd9cbd9",
    "path" : "\/Users\/USER\/Desktop\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703376670720,
    "CFBundleShortVersionString" : "1.600.0",
    "CFBundleIdentifier" : "com.apple.SkyLight",
    "size" : 3796992,
    "uuid" : "01618d26-b265-396b-bbea-d730ba46d7ff",
    "path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
    "name" : "SkyLight"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703291191296,
    "size" : 290816,
    "uuid" : "5115c8ef-bc57-32db-91c6-71b61a79966e",
    "path" : "\/usr\/lib\/system\/libdispatch.dylib",
    "name" : "libdispatch.dylib"
  }
],
  "sharedCache" : {
  "base" : 140703289720832,
  "size" : 19331678208,
  "uuid" : "4d3a144c-02bb-31f1-bca9-83a5cb058c59"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.4G resident=0K(0%) swapped_out_or_unallocated=1.4G(100%)\nWritable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 1920K        4 \nCG image                           508K       35 \nColorSync                          232K       28 \nCoreAnimation                      184K       12 \nCoreGraphics                        12K        2 \nCoreUI image data                 5144K       36 \nFoundation                          32K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                           375.9M      613 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)\nMach message                        16K        2 \nObjC additional data                15K        1 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        100K       25 \nStack                            155.7M       26 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      109.4M       96 \nVM_ALLOCATE (reserved)            32.0M        1         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            44.4M      660 \n__DATA_CONST                      32.5M      343 \n__DATA_DIRTY                      1641K      213 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       674.3M      135 \n__TEXT                           803.8M      660 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                      187.6M       49 \nshared memory                     3136K       33 \n===========                     =======  ======= \nTOTAL                              2.8G     3003 \nTOTAL, minus reserved VM space     2.4G     3003 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "5ffde50ce2aacd000d47a95f",
      "factorPackIds" : {

      },
      "deploymentId" : 240000179
    },
    {
      "rolloutId" : "60da5e84ab0ca017dace9abf",
      "factorPackIds" : {

      },
      "deploymentId" : 240000008
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/gaojieyu/Downloads/1i0z.pdb format pdb

1i0z.pdb title:  
Human heart L-lactate dehydrogenase H chain, ternary complex with nadh and
oxamate [more info...]  
  
Chain information for 1i0z.pdb #1  
---  
Chain | Description | UniProt  
A B | LDH-B | LDHB_HUMAN  
  
Non-standard residues in 1i0z.pdb #1  
---  
NAI — 1,4-dihydronicotinamide adenine dinucleotide (NADH)  
OXM — oxamic acid  
  

> select /A/B

5522 atoms, 5292 bonds, 986 residues, 1 model selected  

> hide sel cartoons

> hide sel atoms

> select ::name="OXM"

12 atoms, 10 bonds, 2 residues, 1 model selected  

> show sel atoms

> ui mousemode right zone

> select sel : select sel : select sel : select /A-B:67

20 atoms, 20 bonds, 2 residues, 1 model selected  

> select /A-B:67

20 atoms, 20 bonds, 2 residues, 1 model selected  

> select sel : select sel : select /A/B

5522 atoms, 5292 bonds, 986 residues, 1 model selected  

> select sel : select sel : select ::name="OXM"

12 atoms, 10 bonds, 2 residues, 1 model selected  

> select sel : select /A-B:67

20 atoms, 20 bonds, 2 residues, 1 model selected  

> ui mousemode right select

> ui mousemode right label

> select sel : select clear

> select ::name="OXM"

12 atoms, 10 bonds, 2 residues, 1 model selected  

> select sel : show sel atoms

> select
> /A-B:2-8,29-42,54-72,82-87,105-128,139-152,154-156,163-179,181-185,201-203,211-215,226-246,249-265,309-328

2782 atoms, 2808 bonds, 350 residues, 1 model selected  

> select /A-B:106

22 atoms, 20 bonds, 2 residues, 1 model selected  

> label delete residues

> ui mousemode right select

> select
> /A-B:2-8,29-42,54-72,82-87,105-128,139-152,154-156,163-179,181-185,201-203,211-215,226-246,249-265,309-328

2782 atoms, 2808 bonds, 350 residues, 1 model selected  

> ui mousemode right select

Drag select of 1 atoms  

> ui mousemode right distance

> select clear

Mismatch between Cocoa '\x0' and Carbon 'z' for virtual key 6 with
QFlags(NoModifier)  

Mismatch between Cocoa '\x0' and Carbon 'Z' for virtual key 6 with
QFlags(ShiftModifier)  

Mismatch between Cocoa '\x0' and Carbon 'z' for virtual key 6 with
QFlags(ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon 'Z' for virtual key 6 with
QFlags(ShiftModifier|ControlModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u03a9' for virtual key 6 with
QFlags(AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00b8' for virtual key 6 with
QFlags(ShiftModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u03a9' for virtual key 6 with
QFlags(ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\u00b8' for virtual key 6 with
QFlags(ShiftModifier|ControlModifier|AltModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ShiftModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ShiftModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ControlModifier|AltModifier|MetaModifier)  

Mismatch between Cocoa '\x0' and Carbon '\x1a' for virtual key 6 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)  

Drag select of 1 atoms  

> ui mousemode right distance

> ui mousemode right select

> ui mousemode right distance

> ui tool show Distances

> distance /A:193@NE2 /A:402@O1

Distance between /A HIS 193 NE2 and OXM 402 O1: 2.818Å  

> save /Users/gaojieyu/Desktop/image14.png supersample 3

Drag select of 1 atoms  
Exactly two atoms must be selected!  

> select clear

> undo

Drag select of 1 atoms  
Exactly two atoms must be selected!  
Drag select of 1 atoms  

> distance /A:169@NH2 /A:402@O3

Distance between /A ARG 169 NH2 and OXM 402 O3: 2.948Å  

> ui mousemode right select

Drag select of 1 atoms  

> distance /A:169@NH1 /A:402@O2

Distance between /A ARG 169 NH1 and OXM 402 O2: 2.908Å  

> select clear

Drag select of 5 atoms, 5 bonds  
Drag select of 7 atoms, 7 bonds  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

Drag select of 6 atoms, 6 bonds  

> hide sel atoms

Drag select of 7 atoms, 6 bonds  

> hide sel atoms

Drag select of 2 atoms, 1 bonds  

> hide sel atoms

Drag select of 5 atoms, 4 bonds  

> hide sel atoms

> save /Users/gaojieyu/Desktop/image15.png supersample 3

> undo

> select clear

Drag select of 7 atoms, 6 bonds  

> hide sel atoms

Drag select of 7 atoms, 6 bonds  

> hide sel atoms

Drag select of 1 atoms  

> hide sel atoms

Drag select of 1 atoms  

> ui tool show H-Bonds

> ui mousemode right distance

Exactly two atoms must be selected!  
Drag select of 1 atoms  
Exactly two atoms must be selected!  

> ui mousemode right select

> ui mousemode right distance

Exactly two atoms must be selected!  
Drag select of 1 atoms  

> ui mousemode right distance

Exactly two atoms must be selected!  
Drag select of 1 atoms  

> ui mousemode right distance

> distance /B:412@O2 /B:169@NH1

Distance between /B OXM 412 O2 and ARG 169 NH1: 2.863Å  
Drag select of 1 atoms  
Exactly two atoms must be selected!  

> ui mousemode right select

Drag select of 1 atoms  
Exactly two atoms must be selected!  
Drag select of 1 atoms  

> ui mousemode right distance

Exactly two atoms must be selected!  
Drag select of 1 atoms  
Exactly two atoms must be selected!  

> ui mousemode right select

Drag select of 1 atoms  

> distance /B:193@NE2 /B:412@O1

Distance between /B HIS 193 NE2 and OXM 412 O1: 2.781Å  

> ui mousemode right select

Drag select of 1 atoms  

> distance /B:412@O3 /B:169@NH2

Distance between /B OXM 412 O3 and ARG 169 NH2: 2.838Å  

> select clear

> save /Users/gaojieyu/Desktop/image16.png supersample 3


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/gaojieyu/Downloads/1i0z.pdb format pdb

1i0z.pdb title:  
Human heart L-lactate dehydrogenase H chain, ternary complex with nadh and
oxamate [more info...]  
  
Chain information for 1i0z.pdb #1  
---  
Chain | Description | UniProt  
A B | LDH-B | LDHB_HUMAN  
  
Non-standard residues in 1i0z.pdb #1  
---  
NAI — 1,4-dihydronicotinamide adenine dinucleotide (NADH)  
OXM — oxamic acid  
  




OpenGL version: 4.1 INTEL-18.8.4
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 512 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1731.140.2.0.0 (iBridge: 19.16.16066.0.0,0)
      OS Loader Version: 540.120.3~19

Software:

    System Software Overview:

      System Version: macOS 12.5.1 (21G83)
      Kernel Version: Darwin 21.6.0
      Time since boot: 6 days 2:29

Graphics/Displays:

    Intel Iris Plus Graphics:

      Chipset Model: Intel Iris Plus Graphics
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x8a53
      Revision ID: 0x0007
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: UnassignedWindow Toolkit
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionMismatch between Cocoa and Carbon for virtual key

comment:2 by pett, 3 years ago

Again in NSTextInputContext(NSInputContext_WithCompletion)

comment:3 by pett, 3 years ago

Resolution: can't reproduce
Status: acceptedclosed
Note: See TracTickets for help on using tickets.