![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7546 closed defect (nonchimerax)
Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [16104]
Path: /Applications/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [16104]
User ID: 501
Date/Time: 2022-09-01 12:22:07.904 +0100
OS Version: macOS 11.6.8 (20G730)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: EF7E5736-BD73-EC8B-9E14-B6797D473A00
Sleep/Wake UUID: 1FE54A0D-CD0C-4F0C-81D2-DD92A618CF90
Time Awake Since Boot: 12000 seconds
Time Since Wake: 1700 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2061291e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff206415bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20525bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20686d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20596406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff4658d096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4658421c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5fcc6d09 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff4658572d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ef57dba IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ef57bce intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ef5e5eb glrWriteBufferData + 1369
13 GLEngine 0x00007fff6bd9c13f glBufferSubData_Exec + 608
14 libffi.dylib 0x00007fff2dc248f5 ffi_call_unix64 + 85
15 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
16 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
17 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
18 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
19 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
20 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
21 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
22 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
23 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
24 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
25 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
26 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
27 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
28 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
29 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
30 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
31 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
32 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
33 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
34 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
35 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
36 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
37 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
38 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
39 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
40 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
41 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
42 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
43 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
44 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
45 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
46 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
47 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
48 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
49 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
50 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
51 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
52 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
53 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
54 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
55 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
56 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
57 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
58 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
59 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
60 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
61 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
62 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
63 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
64 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
65 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
66 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
67 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
68 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
69 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
70 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
71 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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73 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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76 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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83 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
84 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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87 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
88 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
89 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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91 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
92 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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94 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
95 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
96 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
97 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
98 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
99 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
100 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
101 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
102 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
103 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
104 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
105 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
106 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
107 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
108 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
109 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
110 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
111 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
112 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
113 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
114 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
115 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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118 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
119 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
120 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
121 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
122 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
123 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
124 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
125 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
126 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
127 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
128 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
129 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
130 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
131 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
132 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
133 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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139 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
140 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
141 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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144 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
145 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
146 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
147 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
148 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
149 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
150 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
151 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
152 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
153 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
154 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
155 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
156 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
157 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
158 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
159 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
160 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
161 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
162 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
163 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
164 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
165 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
166 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
167 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
168 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
169 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
170 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
171 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
172 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
173 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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175 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
176 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
177 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
178 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
179 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
180 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
181 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
182 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
183 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
184 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
185 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
186 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
187 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
188 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
189 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
190 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
191 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
192 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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196 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
197 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
198 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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200 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
201 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
202 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
203 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
204 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
205 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
206 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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212 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
213 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
214 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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221 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
222 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
223 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
224 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
225 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
226 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
227 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
228 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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230 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
231 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
232 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
233 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
234 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
235 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
236 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
237 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
238 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
239 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
240 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
241 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
242 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
243 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
244 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
245 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
246 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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248 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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250 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
251 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
252 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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258 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
259 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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261 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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263 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
264 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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268 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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271 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
272 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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276 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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279 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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281 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
282 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
283 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
284 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
285 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
286 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
287 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
288 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
289 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
290 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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292 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
293 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
294 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
295 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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300 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
301 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
302 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
303 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
304 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
305 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
306 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
307 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
308 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
309 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
310 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
311 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
312 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
313 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
314 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
315 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
316 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
317 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
318 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
319 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
320 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
321 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
322 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
323 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
324 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
325 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
326 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
327 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
328 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
329 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
330 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
331 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
332 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
333 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
334 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
335 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
336 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
337 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
338 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
339 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
340 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
341 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
342 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
343 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
344 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
345 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
346 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
347 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
348 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
349 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
350 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
351 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
352 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
353 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
354 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
355 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
356 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
357 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
358 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
359 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
360 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
361 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
362 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
363 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
364 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
365 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
366 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
367 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
368 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
369 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
370 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
371 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
372 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
373 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
374 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
375 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
376 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
377 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
378 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
379 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
380 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
381 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
382 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
383 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
384 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
385 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
386 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
387 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
388 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
389 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
390 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
391 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
392 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
393 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
394 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
395 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
396 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
397 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
398 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
399 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
400 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
401 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
402 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
403 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
404 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
405 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
406 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
407 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
408 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
409 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
410 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
411 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
412 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
413 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
414 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
415 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
416 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
417 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
418 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
419 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
420 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
421 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
422 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
423 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
424 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
425 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
426 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
427 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
428 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
429 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
430 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
431 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
432 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
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434 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
435 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
436 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
437 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
438 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
439 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
440 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
441 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
442 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
443 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
444 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
445 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
446 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
447 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
448 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
449 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
450 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
451 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
452 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
453 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
454 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
455 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
456 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
457 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
458 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
459 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
460 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
461 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
462 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
463 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
464 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
465 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
466 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
467 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
468 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
469 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
470 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
471 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
472 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
473 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
474 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
475 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
476 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
477 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
478 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
479 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
480 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
481 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
482 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
483 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
484 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
485 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
486 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
487 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
488 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
489 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
490 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
491 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
492 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
493 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
494 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
495 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
496 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
497 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
498 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
499 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
500 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
501 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
502 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
503 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
504 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
505 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
506 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
507 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
508 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
509 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
510 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
511 libffi.dylib 0x00007fff2dc2422d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2060ecce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20641e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x00000001051eb49f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff206151c2 kevent64 + 10
1 QtWebEngineCore 0x0000000115f735ca 0x112011000 + 66463178
2 QtWebEngineCore 0x0000000115f734c7 0x112011000 + 66462919
3 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
4 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
5 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
6 QtWebEngineCore 0x0000000115ef984d 0x112011000 + 65964109
7 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
8 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
9 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0680c 0x112011000 + 66017292
5 QtWebEngineCore 0x0000000115f0637d 0x112011000 + 66016125
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff206151c2 kevent64 + 10
1 QtWebEngineCore 0x0000000115f735ca 0x112011000 + 66463178
2 QtWebEngineCore 0x0000000115f734c7 0x112011000 + 66462919
3 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
4 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
5 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
6 QtWebEngineCore 0x0000000114e38e32 0x112011000 + 48397874
7 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
8 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
9 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f4178f 0x112011000 + 66258831
4 QtWebEngineCore 0x0000000115e77089 0x112011000 + 65429641
5 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
6 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
7 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
8 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
9 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
10 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2060ecce __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20641e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000115f398bb 0x112011000 + 66226363
3 QtWebEngineCore 0x000000011800a55d 0x112011000 + 100635997
4 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
5 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115e77028 0x112011000 + 65429544
4 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
5 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
6 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
7 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
8 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
9 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff206151c2 kevent64 + 10
1 QtWebEngineCore 0x0000000115f735ca 0x112011000 + 66463178
2 QtWebEngineCore 0x0000000115f734c7 0x112011000 + 66462919
3 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
4 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
5 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
6 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
7 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
8 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f4178f 0x112011000 + 66258831
4 QtWebEngineCore 0x0000000115e77089 0x112011000 + 65429641
5 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
6 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
7 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
8 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
9 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
10 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115e77028 0x112011000 + 65429544
4 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
5 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
6 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
7 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
8 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
9 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 11:: NetworkService
0 libsystem_kernel.dylib 0x00007fff206151c2 kevent64 + 10
1 QtWebEngineCore 0x0000000115f735ca 0x112011000 + 66463178
2 QtWebEngineCore 0x0000000115f734c7 0x112011000 + 66462919
3 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
4 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
5 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
6 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
7 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
8 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f4178f 0x112011000 + 66258831
4 QtWebEngineCore 0x0000000115e77089 0x112011000 + 65429641
5 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
6 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
7 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
8 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
9 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
10 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0680c 0x112011000 + 66017292
5 QtWebEngineCore 0x0000000115f0646d 0x112011000 + 66016365
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f4178f 0x112011000 + 66258831
4 QtWebEngineCore 0x0000000115e77089 0x112011000 + 65429641
5 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
6 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
7 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
8 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
9 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
10 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20739ecf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff207385af __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff207379bc CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff230c6bba _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f4178f 0x112011000 + 66258831
4 QtWebEngineCore 0x0000000115e77089 0x112011000 + 65429641
5 QtWebEngineCore 0x0000000115ef019c 0x112011000 + 65925532
6 QtWebEngineCore 0x0000000115ea7ff8 0x112011000 + 65630200
7 QtWebEngineCore 0x0000000115f12458 0x112011000 + 66065496
8 QtWebEngineCore 0x0000000115f125ea 0x112011000 + 66065898
9 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
10 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0653a 0x112011000 + 66016570
5 QtWebEngineCore 0x0000000115f063ad 0x112011000 + 66016173
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 18:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0680c 0x112011000 + 66017292
5 QtWebEngineCore 0x0000000115f0640d 0x112011000 + 66016269
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 19:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0680c 0x112011000 + 66017292
5 QtWebEngineCore 0x0000000115f0637d 0x112011000 + 66016125
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 20:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2060c2aa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2060c61c mach_msg + 60
2 QtWebEngineCore 0x0000000115f419c6 0x112011000 + 66259398
3 QtWebEngineCore 0x0000000115f05d5f 0x112011000 + 66014559
4 QtWebEngineCore 0x0000000115f0680c 0x112011000 + 66017292
5 QtWebEngineCore 0x0000000115f0640d 0x112011000 + 66016269
6 QtWebEngineCore 0x0000000115f3a4a8 0x112011000 + 66229416
7 libsystem_pthread.dylib 0x00007fff206418fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2063d443 thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff2063d420 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff2063d420 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff2063d420 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff2063d420 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff2063d420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001100eee00 rcx: 0x00007ffdc4155a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007ffdc4155a80 rsp: 0x00007ffdc4155a58
r8: 0x00007ffdc4155f48 r9: 0xaf93b44d43e69f16 r10: 0x00000001100eee00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007ffdc77db518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2061291e rfl: 0x0000000000000246 cr2: 0x000000010469d7b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x1048af000 - 0x1048b0fff +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
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0x1048c5000 - 0x1048c9fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x1048d3000 - 0x1048d3fff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x1048da000 - 0x10497bfff +libarrays.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10499f000 - 0x1049a4fff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x1049ae000 - 0x104d75fff +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x104eba000 - 0x108b45fff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x108dff000 - 0x108f16fff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x108f84000 - 0x108fbafff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x108fce000 - 0x108fe3fff +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10aff3000 - 0x10b002fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x10b016000 - 0x10b02dfff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x10b040000 - 0x10b053fff +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x10b06d000 - 0x10b06ffff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x10b079000 - 0x10b07dfff +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x10b087000 - 0x10b098fff +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x10b0b1000 - 0x10b0ccfff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x10b0e5000 - 0x10b0f8fff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x10b104000 - 0x10b177fff +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x10b1da000 - 0x10b1f9fff +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x10b21c000 - 0x10b24ffff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x10b26e000 - 0x10b274fff +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x10b283000 - 0x10b2dcfff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
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0x7fff3cfd7000 - 0x7fff3d02dfff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
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0x7fff3d467000 - 0x7fff3d46dfff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d5de000 - 0x7fff3d5f5fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.16) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d7a8000 - 0x7fff3d7b3fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d7c8000 - 0x7fff3d7dafff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
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0x7fff3d967000 - 0x7fff3dbc2fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3dbc3000 - 0x7fff3dcd9fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dcda000 - 0x7fff3dcebfff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e30e000 - 0x7fff3e370fff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e371000 - 0x7fff3e396fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e575000 - 0x7fff3e5e1fff com.apple.Safari.Core (16611 - 16611.3.10.1.16) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e5e2000 - 0x7fff3e744fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e745000 - 0x7fff3ea26fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ea52000 - 0x7fff3eb7efff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3eb7f000 - 0x7fff3f01ffff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f020000 - 0x7fff3f108fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fe4f000 - 0x7fff3feccfff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff41067000 - 0x7fff4106afff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4148f000 - 0x7fff414adfff libCGInterfaces.dylib (544.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff42b2d000 - 0x7fff4388dfff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
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0x7fff439bb000 - 0x7fff43a1afff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43a1b000 - 0x7fff43a34fff com.apple.SafariFoundation (16611 - 16611.3.10.1.16) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43a35000 - 0x7fff43a3bfff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43a3c000 - 0x7fff43caffff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44518000 - 0x7fff4451cfff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45e93000 - 0x7fff45e96fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46582000 - 0x7fff4658dfff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47bb8000 - 0x7fff47bf9fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48447000 - 0x7fff48462fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51640000 - 0x7fff5166dfff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff5166e000 - 0x7fff51688fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51689000 - 0x7fff51728fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51918000 - 0x7fff5191bfff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53fb1000 - 0x7fff53fe7fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff555de000 - 0x7fff555e1fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5dd19000 - 0x7fff5e1a4fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5ef3d000 - 0x7fff5ff24fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.13 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff696d6000 - 0x7fff696dafff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bb21000 - 0x7fff6bb27fff libCoreFSCache.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bb28000 - 0x7fff6bb2cfff libCoreVMClient.dylib (200.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bb2d000 - 0x7fff6bb3cfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bb3d000 - 0x7fff6bb3ffff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bb40000 - 0x7fff6bb48fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bb49000 - 0x7fff6bb7cfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bb7d000 - 0x7fff6bbb9fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bbba000 - 0x7fff6bd4dfff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bd4e000 - 0x7fff6bd58fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bd59000 - 0x7fff6bed6fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bed7000 - 0x7fff6befffff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d198000 - 0x7fff6d1f0fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e29a000 - 0x7fff6e2a1fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e2a2000 - 0x7fff6e389fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f51d000 - 0x7fff6f527fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6f90b000 - 0x7fff6f91dfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73c3b000 - 0x7fff73c46fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73e5c000 - 0x7fff73e74fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77784000 - 0x7fff7778bfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=7.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=7.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 5
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 2792K 29
CG raster data 2344K 2
CoreAnimation 5408K 73
CoreGraphics 12K 2
CoreServices 204K 1
CoreUI image data 3168K 28
Foundation 40K 2
Kernel Alloc Once 8K 1
MALLOC 6.3G 668
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 100K 25
Stack 155.7M 26
Stack Guard 56.0M 1
VM_ALLOCATE 162.7M 116
__DATA 35.9M 630
__DATA_CONST 28.8M 323
__DATA_DIRTY 1726K 220
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 529.3M 171
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 661.7M 620
__UNICODE 588K 1
mapped file 296.8M 54
shared memory 2980K 27
=========== ======= =======
TOTAL 8.7G 3053
TOTAL, minus reserved VM space 8.3G 3053
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
Memory Module: BANK 1/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Model: MacBookPro14,2, BootROM 451.140.1.0.0, 2 processors, Dual-Core Intel Core i5, 3.1 GHz, 8 GB, SMC 2.44f6
Graphics: kHW_IntelIrisGraphics650Item, Intel Iris Plus Graphics 650, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x171), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1680.11)
Bluetooth: Version 8.0.5d7, 3 services, 18 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs
Opened scaffold_job802_lafter.mrc as #1, grid size 800,800,800, pixel 2.2,
shown at level 0.0187, step 1, values float32
Opened cryosparc_P4_J96_006_volume_map_sharp_masked.mrc as #4, grid size
800,800,800, pixel 2.2, shown at level 0.173, step 1, values float32
Log from Wed Aug 31 17:40:16 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open scaffold-fitted.cxs
Opened scaffold_job802_lafter.mrc as #1, grid size 800,800,800, pixel 2.2,
shown at level 0.0187, step 1, values float32
Opened cryosparc_P4_J96_006_volume_map_sharp_masked.mrc as #4, grid size
800,800,800, pixel 2.2, shown at level 0.173, step 1, values float32
Log from Wed Aug 31 17:28:25 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs
Opened scaffold_job802_lafter.mrc as #1, grid size 800,800,800, pixel 2.2,
shown at level 0.0307, step 1, values float32
Opened cryosparc_P4_J96_006_volume_map_sharp_masked.mrc as #4, grid size
800,800,800, pixel 2.2, shown at level 0.173, step 1, values float32
Log from Tue Aug 30 17:32:38 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open scaffold_job802_lafter.mrc
Opened scaffold_job802_lafter.mrc as #1, grid size 800,800,800, pixel 2.2,
shown at step 1, values float32
> volume #1 region 0,0,0,799,799,799 step 4
[Repeated 1 time(s)]
> set bgColor white
> lighting full
> lighting shadows false
> volume #1 step 1
> volume #1 change image level -0.00875,0 level 0.1273,0.8 level 1.134,1
> volume #1 level 0.1995
Drag select of 1 scaffold_job802_lafter.mrc
> select clear
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/mot3-fitted-new-isolde-C17.pdb
Chain information for mot3-fitted-new-isolde-C17.pdb #2
---
Chain | Description
A B C D E F G H I J K L M N O P Q | No description available
> select clear
Drag select of 95353 atoms
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,1053.1,0,1,0,764.96,0,0,1,714.74
> view matrix models #2,1,0,0,977.17,0,1,0,677.85,0,0,1,955.18
> ui tool show "Side View"
> view matrix models #2,1,0,0,1004.2,0,1,0,696.17,0,0,1,902.64
> view matrix models #2,1,0,0,1013.3,0,1,0,702.05,0,0,1,879.5
> view matrix models #2,1,0,0,881.88,0,1,0,871.92,0,0,1,877.7
> ui tool show "Fit in Map"
> fitmap #2 inMap #1
Fit molecule mot3-fitted-new-isolde-C17.pdb (#2) to map
scaffold_job802_lafter.mrc (#1) using 95353 atoms
average map value = 0.259, steps = 68
shifted from previous position = 7.67
rotated from previous position = 0.004 degrees
atoms outside contour = 34834, contour level = 0.19953
Position of mot3-fitted-new-isolde-C17.pdb (#2) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00006557 -0.00001593 878.87738470
-0.00006557 1.00000000 -0.00001779 878.87616732
0.00001593 0.00001779 1.00000000 878.90172001
Axis 0.25495746 -0.22824741 -0.93962749
Axis point 10611306.21318669 -16523371.18623308 0.00000000
Rotation angle (degrees) 0.00399822
Shift along axis -802.36507979
> hide sel atoms
> show sel cartoons
[Repeated 1 time(s)]
> transparency 50
> select clear
> volume #1 color #b2b2b22c
> volume #1 color #b2b2b23d
> volume #1 level 0.1696
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/PflAB_dimer_isolde_fitted_C17.pdb
Chain information for PflAB_dimer_isolde_fitted_C17.pdb #3
---
Chain | Description
A C D E F G H I J K L M N O P Q R | No description available
B S T U V W X Y Z a b c d e f g h | No description available
> select add #3
392751 atoms, 396287 bonds, 17 pseudobonds, 24276 residues, 2 models selected
> view matrix models #3,1,0,0,1009.4,0,1,0,794.17,0,0,1,955.71
> view matrix models #3,1,0,0,882.42,0,1,0,880.12,0,0,1,942.44
> volume #1 step 2
> view matrix models #3,1,0,0,869.95,0,1,0,864.47,0,0,1,906.71
> view matrix models #3,1,0,0,867.28,0,1,0,863.21,0,0,1,872.01
> ui tool show "Fit in Map"
> fitmap #3 inMap #1
Fit molecule PflAB_dimer_isolde_fitted_C17.pdb (#3) to map
scaffold_job802_lafter.mrc (#1) using 392751 atoms
average map value = 0.1474, steps = 88
shifted from previous position = 20.7
rotated from previous position = 0.00525 degrees
atoms outside contour = 312857, contour level = 0.16959
Position of PflAB_dimer_isolde_fitted_C17.pdb (#3) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 -0.00008232 0.00002823 878.89069472
0.00008232 1.00000000 0.00002890 878.87083695
-0.00002823 -0.00002890 1.00000000 878.89041995
Axis -0.31512204 0.30789498 0.89771865
Axis point -7748407.89798565 13672698.21108079 0.00000000
Rotation angle (degrees) 0.00525399
Shift along axis 782.63841413
> volume #1 level 0.05353
> hide sel atoms
> show sel cartoons
> select clear
Drag select of 219 residues
> select up
4817 atoms, 4866 bonds, 293 residues, 2 models selected
> select up
23741 atoms, 23968 bonds, 1471 residues, 2 models selected
> select ~sel
464363 atoms, 468641 bonds, 17 pseudobonds, 28738 residues, 6 models selected
> hide sel cartoons
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #2/A
Alignment identifier is 2/A
Drag select of 210 residues
> select subtract #2/A:244
3381 atoms, 209 residues, 1 model selected
> select up
3701 atoms, 3743 bonds, 228 residues, 1 model selected
> open /Users/tina/PG/projects/minicell-
> structure/nanki/cryosparc_P4_J96_006_volume_map_sharp_masked.mrc
Opened cryosparc_P4_J96_006_volume_map_sharp_masked.mrc as #4, grid size
800,800,800, pixel 2.2, shown at step 1, values float32
> open /Users/tina/PG/projects/minicell-structure/fitting/motA_full_motB-
> N_C17_docked.pdb
motA_full_motB-N_C17_docked.pdb title:
Structure of C. Jejuni motab [more info...]
Chain information for motA_full_motB-N_C17_docked.pdb
---
Chain | Description
5.1/A 5.2/A 5.3/A 5.4/A 5.5/A 5.6/A 5.7/A 5.8/A 5.9/A 5.10/A 5.11/A 5.12/A
5.13/A 5.14/A 5.15/A 5.16/A 5.17/A 5.1/B 5.2/B 5.3/B 5.4/B 5.5/B 5.6/B 5.7/B
5.8/B 5.9/B 5.10/B 5.11/B 5.12/B 5.13/B 5.14/B 5.15/B 5.16/B 5.17/B 5.1/C
5.2/C 5.3/C 5.4/C 5.5/C 5.6/C 5.7/C 5.8/C 5.9/C 5.10/C 5.11/C 5.12/C 5.13/C
5.14/C 5.15/C 5.16/C 5.17/C 5.1/D 5.2/D 5.3/D 5.4/D 5.5/D 5.6/D 5.7/D 5.8/D
5.9/D 5.10/D 5.11/D 5.12/D 5.13/D 5.14/D 5.15/D 5.16/D 5.17/D 5.1/E 5.2/E
5.3/E 5.4/E 5.5/E 5.6/E 5.7/E 5.8/E 5.9/E 5.10/E 5.11/E 5.12/E 5.13/E 5.14/E
5.15/E 5.16/E 5.17/E | chemotaxis protein mota, putative
5.1/F 5.2/F 5.3/F 5.4/F 5.5/F 5.6/F 5.7/F 5.8/F 5.9/F 5.10/F 5.11/F 5.12/F
5.13/F 5.14/F 5.15/F 5.16/F 5.17/F 5.1/G 5.2/G 5.3/G 5.4/G 5.5/G 5.6/G 5.7/G
5.8/G 5.9/G 5.10/G 5.11/G 5.12/G 5.13/G 5.14/G 5.15/G 5.16/G 5.17/G |
chemotaxis protein motb, putative
> volume #4 region 0,0,0,799,799,799 step 4
[Repeated 1 time(s)]
> ui tool show "Fit in Map"
> volume #4 color #ffffb247
[Repeated 1 time(s)]
> volume #4 level 0.1726
> select add #4
3701 atoms, 3743 bonds, 228 residues, 4 models selected
> select clear
> select add #4
3 models selected
> view matrix models #4,1,0,0,2.1107,0,1,0,-3.1607,0,0,1,-32.477
> view matrix models #4,1,0,0,2.2566,0,1,0,-3.6426,0,0,1,-43.005
> view matrix models #4,1,0,0,-0.42471,0,1,0,-2.6072,0,0,1,-95.48
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.96783,0.25112,-0.015607,-179.47,-0.25107,0.96796,0.0047287,242.88,0.016295,-0.00065793,0.99987,-109.15
> fitmap #4 inMap #1
Fit map cryosparc_P4_J96_006_volume_map_sharp_masked.mrc in map
scaffold_job802_lafter.mrc using 62125 points
correlation = 0.2682, correlation about mean = 0.06594, overlap = 406.8
steps = 104, shift = 12.4, angle = 1.69 degrees
Position of cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96133458 0.27538098 -0.00106710 -207.96791107
-0.27538116 0.96133512 -0.00002336 276.61535411
0.00101940 0.00031632 0.99999943 -108.89641103
Axis 0.00061674 -0.00378836 -0.99999263
Axis point 882.49841847 879.35091820 0.00000000
Rotation angle (degrees) 15.98484559
Shift along axis 107.71942775
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motB_dimer_fitted_C17.pdb
Chain information for motB_dimer_fitted_C17.pdb #6
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No
description available
> select add #6
48348 atoms, 48926 bonds, 6120 residues, 4 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.96133,0.27538,-0.0010671,-174.12,-0.27538,0.96134,-2.3363e-05,285.73,0.0010194,0.00031632,1,196.08,#6,1,0,0,33.845,0,1,0,9.1189,0,0,1,304.98
> undo
> select subtract #6
3 models selected
> select add #4
3 models selected
> select add #6
48348 atoms, 48926 bonds, 6120 residues, 4 models selected
> select add #4
48348 atoms, 48926 bonds, 6120 residues, 4 models selected
> select add #4
48348 atoms, 48926 bonds, 6120 residues, 4 models selected
> select clear
> select add #6
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
> view matrix models #6,1,0,0,-27.054,0,1,0,63.037,0,0,1,792.22
> view matrix models #6,1,0,0,674.1,0,1,0,749.39,0,0,1,1019.5
> view matrix models #6,1,0,0,851.81,0,1,0,880.93,0,0,1,1072.2
> view matrix models #6,1,0,0,874.38,0,1,0,871.59,0,0,1,808.76
> view matrix models #6,1,0,0,871.61,0,1,0,878.11,0,0,1,844.32
> view matrix models #6,1,0,0,870.62,0,1,0,879.18,0,0,1,857.2
> view matrix models #6,1,0,0,869.96,0,1,0,881.71,0,0,1,865.52
> ui tool show "Fit in Map"
> fitmap #6 inMap #1
Fit molecule motB_dimer_fitted_C17.pdb (#6) to map scaffold_job802_lafter.mrc
(#1) using 48348 atoms
average map value = 0.007575, steps = 100
shifted from previous position = 13.1
rotated from previous position = 0.473 degrees
atoms outside contour = 41524, contour level = 0.05353
Position of motB_dimer_fitted_C17.pdb (#6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99996596 0.00825099 0.00000019 880.00032075
-0.00825099 0.99996595 -0.00013689 879.98604991
-0.00000132 0.00013688 0.99999999 873.77074974
Axis 0.01658820 0.00009102 -0.99986240
Axis point 107107.14158484 -107939.00722600 0.00000000
Rotation angle (degrees) 0.47281708
Shift along axis -858.97280063
> select clear
> select add #5
177378 atoms, 180523 bonds, 23205 residues, 18 models selected
Populating font family aliases took 848 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs
> select clear
> show cartoons
> select clear
> hide atoms
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/fliL-4mer_fitted_C17.pdb /Users/tina/PG/projects/minicell-
> structure/fitting/lafter-scaffold/flgP51-C17-isolde.pdb
Chain information for fliL-4mer_fitted_C17.pdb
---
Chain | Description
7.1/B 7.2/B 7.3/B 7.4/B 7.5/B 7.6/B 7.7/B 7.8/B 7.9/B 7.10/B 7.11/B 7.12/B
7.13/B 7.14/B 7.15/B 7.16/B 7.17/B 7.1/C 7.2/C 7.3/C 7.4/C 7.5/C 7.6/C 7.7/C
7.8/C 7.9/C 7.10/C 7.11/C 7.12/C 7.13/C 7.14/C 7.15/C 7.16/C 7.17/C 7.1/D
7.2/D 7.3/D 7.4/D 7.5/D 7.6/D 7.7/D 7.8/D 7.9/D 7.10/D 7.11/D 7.12/D 7.13/D
7.14/D 7.15/D 7.16/D 7.17/D 7.1/E 7.2/E 7.3/E 7.4/E 7.5/E 7.6/E 7.7/E 7.8/E
7.9/E 7.10/E 7.11/E 7.12/E 7.13/E 7.14/E 7.15/E 7.16/E 7.17/E | No description
available
Chain information for flgP51-C17-isolde.pdb #8
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m
n o p q r s t u v w x y | No description available
Drag select of 6664 residues, 84099 atoms
> view matrix models
> #7.1,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.2,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.3,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.4,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.5,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.6,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.7,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.8,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.9,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.10,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.11,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.12,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.13,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.14,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.15,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.16,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#7.17,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48,#8,1,0,0,920.78,0,1,0,934.58,0,0,1,36.48
> view matrix models
> #7.1,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.2,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.3,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.4,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.5,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.6,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.7,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.8,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.9,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.10,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.11,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.12,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.13,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.14,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.15,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.16,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#7.17,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4,#8,1,0,0,974.26,0,1,0,997.99,0,0,1,1019.4
> view matrix models
> #7.1,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.2,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.3,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.4,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.5,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.6,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.7,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.8,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.9,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.10,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.11,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.12,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.13,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.14,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.15,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.16,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#7.17,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1,#8,1,0,0,965.18,0,1,0,998.34,0,0,1,970.1
> view matrix models
> #7.1,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.2,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.3,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.4,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.5,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.6,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.7,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.8,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.9,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.10,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.11,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.12,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.13,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.14,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.15,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.16,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#7.17,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64,#8,1,0,0,942.39,0,1,0,1001.6,0,0,1,871.64
> select clear
> ui tool show "Fit in Map"
> select add #8
84099 atoms, 84558 bonds, 5406 residues, 1 model selected
> view matrix models #8,1,0,0,862.18,0,1,0,881.17,0,0,1,898.45
> fitmap #8 inMap #1
Fit molecule flgP51-C17-isolde.pdb (#8) to map scaffold_job802_lafter.mrc (#1)
using 84099 atoms
average map value = 0.09489, steps = 92
shifted from previous position = 22.3
rotated from previous position = 3.53 degrees
atoms outside contour = 35778, contour level = 0.05353
Position of flgP51-C17-isolde.pdb (#8) relative to scaffold_job802_lafter.mrc
(#1) coordinates:
Matrix rotation and translation
0.99810598 -0.06142843 -0.00331604 871.07667097
0.06142508 0.99811109 -0.00110368 879.27572042
0.00337757 0.00089790 0.99999389 877.97671581
Axis 0.01626613 -0.05439665 0.99838691
Axis point -14617.99396243 14407.86735845 0.00000000
Rotation angle (degrees) 3.52740813
Shift along axis 842.89985358
> select add #7
137887 atoms, 139162 bonds, 12070 residues, 19 models selected
> select subtract #8
53788 atoms, 54604 bonds, 6664 residues, 18 models selected
> view matrix models #7,1,0,0,-75.737,0,1,0,-166.78,0,0,1,34.311
> fitmap sel inMap #1
Fit molecules fliL-4mer_fitted_C17.pdb (#7.1), fliL-4mer_fitted_C17.pdb
(#7.2), fliL-4mer_fitted_C17.pdb (#7.3), fliL-4mer_fitted_C17.pdb (#7.4),
fliL-4mer_fitted_C17.pdb (#7.5), fliL-4mer_fitted_C17.pdb (#7.6),
fliL-4mer_fitted_C17.pdb (#7.7), fliL-4mer_fitted_C17.pdb (#7.8),
fliL-4mer_fitted_C17.pdb (#7.9), fliL-4mer_fitted_C17.pdb (#7.10),
fliL-4mer_fitted_C17.pdb (#7.11), fliL-4mer_fitted_C17.pdb (#7.12),
fliL-4mer_fitted_C17.pdb (#7.13), fliL-4mer_fitted_C17.pdb (#7.14),
fliL-4mer_fitted_C17.pdb (#7.15), fliL-4mer_fitted_C17.pdb (#7.16),
fliL-4mer_fitted_C17.pdb (#7.17) to map scaffold_job802_lafter.mrc (#1) using
53788 atoms
average map value = 0.03163, steps = 80
shifted from previous position = 5.91
rotated from previous position = 1.93 degrees
atoms outside contour = 33424, contour level = 0.05353
Position of fliL-4mer_fitted_C17.pdb (#7.1) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.2) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.3) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.4) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.5) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.7) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.9) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.10) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.11) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.12) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.13) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.14) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.15) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.16) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
Position of fliL-4mer_fitted_C17.pdb (#7.17) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99943771 0.02998033 0.01501498 940.45372473
-0.03003398 0.99954323 0.00335997 1000.43722033
-0.01490739 -0.00380904 0.99988162 866.56257582
Axis -0.10629840 0.44367380 -0.88986190
Axis point 40063.87988187 -29102.84649949 0.00000000
Rotation angle (degrees) 1.93244525
Shift along axis -427.22196207
> view matrix models #7,1,0,0,-73.357,0,1,0,-173.51,0,0,1,-38.785
> fitmap sel inMap #1
Fit molecules fliL-4mer_fitted_C17.pdb (#7.1), fliL-4mer_fitted_C17.pdb
(#7.2), fliL-4mer_fitted_C17.pdb (#7.3), fliL-4mer_fitted_C17.pdb (#7.4),
fliL-4mer_fitted_C17.pdb (#7.5), fliL-4mer_fitted_C17.pdb (#7.6),
fliL-4mer_fitted_C17.pdb (#7.7), fliL-4mer_fitted_C17.pdb (#7.8),
fliL-4mer_fitted_C17.pdb (#7.9), fliL-4mer_fitted_C17.pdb (#7.10),
fliL-4mer_fitted_C17.pdb (#7.11), fliL-4mer_fitted_C17.pdb (#7.12),
fliL-4mer_fitted_C17.pdb (#7.13), fliL-4mer_fitted_C17.pdb (#7.14),
fliL-4mer_fitted_C17.pdb (#7.15), fliL-4mer_fitted_C17.pdb (#7.16),
fliL-4mer_fitted_C17.pdb (#7.17) to map scaffold_job802_lafter.mrc (#1) using
53788 atoms
average map value = 0.0001063, steps = 2000
shifted from previous position = 205
rotated from previous position = 37.6 degrees
atoms outside contour = 53788, contour level = 0.05353
Position of fliL-4mer_fitted_C17.pdb (#7.1) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.2) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.3) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.4) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.5) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.7) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.9) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.10) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.11) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.12) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.13) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.14) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.15) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.16) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
Position of fliL-4mer_fitted_C17.pdb (#7.17) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.95627340 0.24982114 -0.15208741 1005.13324252
-0.12176710 0.81286066 0.56958785 988.62859873
0.26592096 -0.52616246 0.80773703 670.40981476
Axis -0.89068391 -0.33977935 -0.30204661
Axis point 0.00000000 690.02862080 -653.74777301
Rotation angle (degrees) 37.96044977
Shift along axis -1433.66661127
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.9936,0.10009,0.052411,-195.85,-0.10929,0.73376,0.67057,-227.98,0.028661,-0.672,0.74,740.33
> view matrix models
> #7,0.98029,0.19691,-0.015743,-232.48,-0.17793,0.84557,-0.50334,471.55,-0.085801,0.49622,0.86395,-343.18
> view matrix models
> #7,0.97539,0.21983,0.017208,-270.22,-0.18118,0.84346,-0.50571,478.37,-0.12569,0.49015,0.86253,-296.02
> view matrix models
> #7,0.96214,0.26128,0.077549,-334.51,-0.18681,0.83941,-0.51038,490.89,-0.19844,0.47657,0.85645,-205.41
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.96214,0.26128,0.077549,-357.07,-0.18681,0.83941,-0.51038,492.91,-0.19844,0.47657,0.85645,-200.08
> view matrix models
> #7,0.96214,0.26128,0.077549,-354.41,-0.18681,0.83941,-0.51038,492.58,-0.19844,0.47657,0.85645,-201.75
> select clear
> hide atoms
> show cartoons
> hide cartoons
> select add #7
53788 atoms, 54604 bonds, 6664 residues, 18 models selected
> show sel cartoons
> view matrix models
> #7,0.96214,0.26128,0.077549,-346.54,-0.18681,0.83941,-0.51038,510.24,-0.19844,0.47657,0.85645,0.91652
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.95851,0.28036,0.051428,-344.84,-0.19261,0.77007,-0.60818,644.18,-0.21012,0.57305,0.79213,-39.722
> view matrix models
> #7,0.96723,0.25308,0.020245,-307.87,-0.18951,0.77275,-0.60576,636.94,-0.16895,0.58208,0.79539,-92.199
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.96723,0.25308,0.020245,-344.25,-0.18951,0.77275,-0.60576,642.85,-0.16895,0.58208,0.79539,-53.979
> fitmap sel inMap #1
Fit molecules fliL-4mer_fitted_C17.pdb (#7.1), fliL-4mer_fitted_C17.pdb
(#7.2), fliL-4mer_fitted_C17.pdb (#7.3), fliL-4mer_fitted_C17.pdb (#7.4),
fliL-4mer_fitted_C17.pdb (#7.5), fliL-4mer_fitted_C17.pdb (#7.6),
fliL-4mer_fitted_C17.pdb (#7.7), fliL-4mer_fitted_C17.pdb (#7.8),
fliL-4mer_fitted_C17.pdb (#7.9), fliL-4mer_fitted_C17.pdb (#7.10),
fliL-4mer_fitted_C17.pdb (#7.11), fliL-4mer_fitted_C17.pdb (#7.12),
fliL-4mer_fitted_C17.pdb (#7.13), fliL-4mer_fitted_C17.pdb (#7.14),
fliL-4mer_fitted_C17.pdb (#7.15), fliL-4mer_fitted_C17.pdb (#7.16),
fliL-4mer_fitted_C17.pdb (#7.17) to map scaffold_job802_lafter.mrc (#1) using
53788 atoms
average map value = 0.03157, steps = 120
shifted from previous position = 27.7
rotated from previous position = 3.41 degrees
atoms outside contour = 33374, contour level = 0.05353
Position of fliL-4mer_fitted_C17.pdb (#7.1) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.2) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.3) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.4) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.5) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.7) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.9) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.10) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.11) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.12) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.13) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.14) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.15) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.16) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
Position of fliL-4mer_fitted_C17.pdb (#7.17) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.96612391 0.20396136 -0.15812766 988.78243924
-0.07253332 0.80260671 0.59208225 1012.33922153
0.24767622 -0.56055530 0.79021152 669.60181275
Axis -0.91999299 -0.32389776 -0.22068790
Axis point 0.00000000 893.86939016 -653.94085115
Rotation angle (degrees) 38.78782745
Shift along axis -1385.34033001
> volume #1 level 0.01676
> view matrix models
> #7,0.96723,0.25308,0.020245,-345.62,-0.18951,0.77275,-0.60576,641.46,-0.16895,0.58208,0.79539,-76.131
> view matrix models
> #7,0.96723,0.25308,0.020245,-340.84,-0.18951,0.77275,-0.60576,693.13,-0.16895,0.58208,0.79539,-83.677
> fitmap sel inMap #1
Fit molecules fliL-4mer_fitted_C17.pdb (#7.1), fliL-4mer_fitted_C17.pdb
(#7.2), fliL-4mer_fitted_C17.pdb (#7.3), fliL-4mer_fitted_C17.pdb (#7.4),
fliL-4mer_fitted_C17.pdb (#7.5), fliL-4mer_fitted_C17.pdb (#7.6),
fliL-4mer_fitted_C17.pdb (#7.7), fliL-4mer_fitted_C17.pdb (#7.8),
fliL-4mer_fitted_C17.pdb (#7.9), fliL-4mer_fitted_C17.pdb (#7.10),
fliL-4mer_fitted_C17.pdb (#7.11), fliL-4mer_fitted_C17.pdb (#7.12),
fliL-4mer_fitted_C17.pdb (#7.13), fliL-4mer_fitted_C17.pdb (#7.14),
fliL-4mer_fitted_C17.pdb (#7.15), fliL-4mer_fitted_C17.pdb (#7.16),
fliL-4mer_fitted_C17.pdb (#7.17) to map scaffold_job802_lafter.mrc (#1) using
53788 atoms
average map value = 0.05572, steps = 72
shifted from previous position = 10.2
rotated from previous position = 1.94 degrees
atoms outside contour = 7115, contour level = 0.016764
Position of fliL-4mer_fitted_C17.pdb (#7.1) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.2) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.3) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.4) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.5) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.7) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.9) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.10) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.11) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.12) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.13) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.14) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.15) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.16) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
Position of fliL-4mer_fitted_C17.pdb (#7.17) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.97036199 0.17278780 -0.16894376 981.53942723
-0.04324389 0.81198237 0.58207782 1012.82288540
0.23775530 -0.55752041 0.79538884 677.49010257
Axis -0.92715923 -0.33088396 -0.17575999
Axis point 0.00000000 1018.35475932 -635.56307572
Rotation angle (degrees) 37.92028054
Shift along axis -1364.24583831
> select clear
> close #8
> close #2
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/flgP51-C17-isolde.pdb /Users/tina/PG/projects/minicell-
> structure/fitting/lafter-scaffold/mot3-fitted-new-isolde-C17.pdb
Chain information for flgP51-C17-isolde.pdb #2
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m
n o p q r s t u v w x y | No description available
Chain information for mot3-fitted-new-isolde-C17.pdb #8
---
Chain | Description
A B C D E F G H I J K L M N O P Q | No description available
> select clear
Drag select of 179452 atoms
> view matrix models
> #2,1,0,0,674.05,0,1,0,-101.44,0,0,1,878.88,#8,1,0,0,674.05,0,1,0,-101.44,0,0,1,878.88
> view matrix models
> #2,1,0,0,869.61,0,1,0,984.64,0,0,1,750.7,#8,1,0,0,869.61,0,1,0,984.64,0,0,1,750.7
> view matrix models
> #2,1,0,0,870.54,0,1,0,938.91,0,0,1,755.57,#8,1,0,0,870.54,0,1,0,938.91,0,0,1,755.57
> view matrix models
> #2,1,0,0,881.58,0,1,0,888.1,0,0,1,760.39,#8,1,0,0,881.58,0,1,0,888.1,0,0,1,760.39
> view matrix models
> #2,1,0,0,873.63,0,1,0,912.2,0,0,1,884.03,#8,1,0,0,873.63,0,1,0,912.2,0,0,1,884.03
> fitmap sel inMap #1
Fit molecules flgP51-C17-isolde.pdb (#2), mot3-fitted-new-isolde-C17.pdb (#8)
to map scaffold_job802_lafter.mrc (#1) using 179452 atoms
average map value = 0.01777, steps = 80
shifted from previous position = 9.39
rotated from previous position = 4.45 degrees
atoms outside contour = 122284, contour level = 0.016764
Position of flgP51-C17-isolde.pdb (#2) relative to scaffold_job802_lafter.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999087 0.00391815 -0.00170366 877.36498715
-0.00403841 0.99698376 -0.07750534 923.09188428
0.00139484 0.07751152 0.99699048 878.66530334
Axis 0.99848645 -0.01995791 -0.05124932
Axis point 0.00000000 -11385.44293804 12562.36727267
Rotation angle (degrees) 4.45211657
Shift along axis 812.58306654
Position of mot3-fitted-new-isolde-C17.pdb (#8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99999087 0.00391815 -0.00170366 877.36498715
-0.00403841 0.99698376 -0.07750534 923.09188428
0.00139484 0.07751152 0.99699048 878.66530334
Axis 0.99848645 -0.01995791 -0.05124932
Axis point 0.00000000 -11385.44293804 12562.36727267
Rotation angle (degrees) 4.45211657
Shift along axis 812.58306654
> ui mousemode right translate
> ui mousemode right zoom
> select clear
> hide atoms
> show cartoons
> volume #1 level 0.1817
> select add #2
84099 atoms, 84558 bonds, 5406 residues, 1 model selected
> select add #8
179452 atoms, 180880 bonds, 11339 residues, 2 models selected
> select ~sel
672265 atoms, 680340 bonds, 17 pseudobonds, 60265 residues, 46 models selected
> hide sel cartoons
[Repeated 1 time(s)]
> volume #1 step 1
> select ~sel
179452 atoms, 180880 bonds, 11339 residues, 2 models selected
> ui tool show "Fit in Map"
> fitmap sel inMap #1
Fit molecules flgP51-C17-isolde.pdb (#2), mot3-fitted-new-isolde-C17.pdb (#8)
to map scaffold_job802_lafter.mrc (#1) using 179452 atoms
average map value = 0.01777, steps = 40
shifted from previous position = 0.0499
rotated from previous position = 0.0162 degrees
atoms outside contour = 158764, contour level = 0.18174
Position of flgP51-C17-isolde.pdb (#2) relative to scaffold_job802_lafter.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999155 0.00373817 -0.00170954 877.33771090
-0.00385974 0.99696759 -0.07772217 923.06359384
0.00141382 0.07772812 0.99697359 878.65412406
Axis 0.99860660 -0.02006436 -0.04880864
Axis point 0.00000000 -11327.97079381 12528.74493329
Rotation angle (degrees) 4.46405176
Shift along axis 814.70863871
Position of mot3-fitted-new-isolde-C17.pdb (#8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99999155 0.00373817 -0.00170954 877.33771090
-0.00385974 0.99696759 -0.07772217 923.06359384
0.00141382 0.07772812 0.99697359 878.65412406
Axis 0.99860660 -0.02006436 -0.04880864
Axis point 0.00000000 -11327.97079381 12528.74493329
Rotation angle (degrees) 4.46405176
Shift along axis 814.70863871
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.99999,0.0037382,-0.0017095,880.09,-0.0038597,0.99697,-0.077722,886.9,0.0014138,0.077728,0.99697,873.86,#8,0.99999,0.0037382,-0.0017095,880.09,-0.0038597,0.99697,-0.077722,886.9,0.0014138,0.077728,0.99697,873.86
> fitmap sel inMap #1
Fit molecules flgP51-C17-isolde.pdb (#2), mot3-fitted-new-isolde-C17.pdb (#8)
to map scaffold_job802_lafter.mrc (#1) using 179452 atoms
average map value = 0.2245, steps = 72
shifted from previous position = 6.46
rotated from previous position = 4.47 degrees
atoms outside contour = 70674, contour level = 0.18174
Position of flgP51-C17-isolde.pdb (#2) relative to scaffold_job802_lafter.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999999 -0.00010408 0.00000627 878.89740549
0.00010408 0.99999999 0.00003232 878.92882652
-0.00000627 -0.00003232 1.00000000 878.90238463
Axis -0.29606081 0.05741849 0.95344172
Axis point -8097816.39163636 10232217.60315603 0.00000000
Rotation angle (degrees) 0.00625436
Shift along axis 628.24189507
Position of mot3-fitted-new-isolde-C17.pdb (#8) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99999999 -0.00010408 0.00000627 878.89740549
0.00010408 0.99999999 0.00003232 878.92882652
-0.00000627 -0.00003232 1.00000000 878.90238463
Axis -0.29606081 0.05741849 0.95344172
Axis point -8097816.39163636 10232217.60315603 0.00000000
Rotation angle (degrees) 0.00625436
Shift along axis 628.24189507
> select clear
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/flgP51-C17-isolde.pdb models #2 relModel #1
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/PflAB_dimer_isolde_fitted_C17.pdb models #3 relModel #1
> select clear
> show cartoons
> select add #5
177378 atoms, 180523 bonds, 23205 residues, 18 models selected
> fitmap sel inMap #4
Fit molecules motA_full_motB-N_C17_docked.pdb (#5.1), motA_full_motB-
N_C17_docked.pdb (#5.2), motA_full_motB-N_C17_docked.pdb (#5.3),
motA_full_motB-N_C17_docked.pdb (#5.4), motA_full_motB-N_C17_docked.pdb
(#5.5), motA_full_motB-N_C17_docked.pdb (#5.6), motA_full_motB-
N_C17_docked.pdb (#5.7), motA_full_motB-N_C17_docked.pdb (#5.8),
motA_full_motB-N_C17_docked.pdb (#5.9), motA_full_motB-N_C17_docked.pdb
(#5.10), motA_full_motB-N_C17_docked.pdb (#5.11), motA_full_motB-
N_C17_docked.pdb (#5.12), motA_full_motB-N_C17_docked.pdb (#5.13),
motA_full_motB-N_C17_docked.pdb (#5.14), motA_full_motB-N_C17_docked.pdb
(#5.15), motA_full_motB-N_C17_docked.pdb (#5.16), motA_full_motB-
N_C17_docked.pdb (#5.17) to map
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) using 177378 atoms
average map value = 0.3097, steps = 52
shifted from previous position = 2.99
rotated from previous position = 0.238 degrees
atoms outside contour = 9201, contour level = 0.17259
Position of motA_full_motB-N_C17_docked.pdb (#5.1) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.2) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.3) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.4) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.5) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.6) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.7) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.8) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.9) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.10) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.11) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.12) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.13) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.14) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.15) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.16) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
Position of motA_full_motB-N_C17_docked.pdb (#5.17) relative to
cryosparc_P4_J96_006_volume_map_sharp_masked.mrc (#4) coordinates:
Matrix rotation and translation
0.96243241 -0.27152136 0.00000164 271.97472310
0.27152136 0.96243241 -0.00000012 -205.88638685
-0.00000154 0.00000056 1.00000000 110.64505618
Axis 0.00000126 0.00000585 1.00000000
Axis point 880.01603167 879.91053789 0.00000000
Rotation angle (degrees) 15.75481667
Shift along axis 110.64419488
> select clear
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motB_dimer_fitted_C17.pdb models #6 relModel #1
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/fliL-4mer_fitted_C17.pdb models #7 relModel #1
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/mot3-fitted-new-isolde-C17.pdb models #8 relModel #1
> hide #!1 models
> hide #2 models
> hide #!3 models
> hide #8 models
> hide #!7 models
> select clear
Drag select of 1717 residues
> select ~sel
838447 atoms, 847723 bonds, 17 pseudobonds, 69887 residues, 47 models selected
> hide sel & #6#5.1-17 cartoons
> select clear
Drag select of 1357 residues
> select up
10434 atoms, 10619 bonds, 1365 residues, 1 model selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for motA_full_motB-N_C17_docked.pdb_A SES surface #5.9.1:
minimum, -17.94, mean -2.59, maximum 18.69
Coulombic values for motA_full_motB-N_C17_docked.pdb_B SES surface #5.9.2:
minimum, -21.91, mean -2.60, maximum 19.44
Coulombic values for motA_full_motB-N_C17_docked.pdb_C SES surface #5.9.3:
minimum, -22.36, mean -2.71, maximum 16.24
Coulombic values for motA_full_motB-N_C17_docked.pdb_D SES surface #5.9.4:
minimum, -26.17, mean -2.51, maximum 13.22
Coulombic values for motA_full_motB-N_C17_docked.pdb_E SES surface #5.9.5:
minimum, -21.41, mean -2.65, maximum 15.58
Coulombic values for motA_full_motB-N_C17_docked.pdb_F SES surface #5.9.6:
minimum, -8.49, mean 0.84, maximum 12.19
Coulombic values for motA_full_motB-N_C17_docked.pdb_G SES surface #5.9.7:
minimum, -9.30, mean 0.89, maximum 16.71
To also show corresponding color key, enter the above coulombic command and
add key true
> volume #4 step 1
> ui mousemode right "rotate selected models"
> view matrix models
> #5.9,0.99903,0.018601,-0.039929,18.369,-0.0182,0.99978,0.010392,8.4021,0.040114,-0.0096549,0.99915,-25.763
> ui mousemode right "translate selected models"
> view matrix models
> #5.9,0.99903,0.018601,-0.039929,18.22,-0.0182,0.99978,0.010392,10.642,0.040114,-0.0096549,0.99915,-31.716
> ui tool show "Show Sequence Viewer"
> sequence chain #6/Z
Alignment identifier is 6/Z
> hide sel surfaces
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #5.9/D
Alignment identifier is 5.9/D
Drag select of 7 residues
> select clear
[Repeated 1 time(s)]Drag select of 34 residues
> select up
648 atoms, 648 bonds, 81 residues, 1 model selected
> select up
2844 atoms, 2878 bonds, 360 residues, 1 model selected
> save /Users/tina/PG/projects/structure-modelling/motB/MotB2-periplasmic.pdb
> models #6 selectedOnly true relModel #1
> hide #6 models
> hide #!5 models
> view matrix models
> #6,0.99997,0.008251,1.864e-07,875.95,-0.008251,0.99997,-0.00013689,927.13,-1.3159e-06,0.00013688,1,929.56
> view matrix models
> #6,0.99997,0.008251,1.864e-07,875.06,-0.008251,0.99997,-0.00013689,940.88,-1.3159e-06,0.00013688,1,943.76
> show #2 models
> show #8 models
> hide #2 models
> hide #8 models
> volume #1 level 0.1443
> show #8 models
> show #!3 models
Drag select of 263 residues
> select up
8841 atoms, 8920 bonds, 730 residues, 3 models selected
> select up
26585 atoms, 26846 bonds, 1831 residues, 3 models selected
> select ~sel
825132 atoms, 834374 bonds, 17 pseudobonds, 69773 residues, 47 models selected
> hide sel & #8#!3 cartoons
> select clear
[Repeated 1 time(s)]
> show #8#!3 cartoons
> hide #8 models
> show #!5 models
> show #6 models
> show #!7 models
> hide #!5 models
> select add #6
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
> show sel cartoons
> volume #1 level 0.08336
> select clear
> volume #1 level 0.02246
> select add #6
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
> view matrix models
> #6,0.99997,0.008251,1.864e-07,887.55,-0.008251,0.99997,-0.00013689,938.61,-1.3159e-06,0.00013688,1,845.67
> ui tool show "Fit in Map"
> view matrix models
> #6,0.99997,0.008251,1.864e-07,884.04,-0.008251,0.99997,-0.00013689,939.45,-1.3159e-06,0.00013688,1,870.72
> view matrix models
> #6,0.99997,0.008251,1.864e-07,889.7,-0.008251,0.99997,-0.00013689,892.2,-1.3159e-06,0.00013688,1,867.04
> fitmap sel inMap #1
Fit molecule motB_dimer_fitted_C17.pdb (#6) to map scaffold_job802_lafter.mrc
(#1) using 48348 atoms
average map value = 0.0431, steps = 144
shifted from previous position = 30.2
rotated from previous position = 4.93 degrees
atoms outside contour = 23195, contour level = 0.022458
Position of motB_dimer_fitted_C17.pdb (#6) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99697371 -0.07773945 -0.00001747 879.99974598
0.07773945 0.99697371 0.00003960 879.96695222
0.00001434 -0.00004084 1.00000000 841.20770679
Axis -0.00051735 -0.00020463 0.99999985
Axis point -10864.30300521 11748.38741660 0.00000000
Rotation angle (degrees) 4.45864158
Shift along axis 840.57224255
> view matrix models
> #6,0.99697,-0.077739,-1.7474e-05,905.87,0.077739,0.99697,3.9599e-05,866.53,1.4342e-05,-4.0838e-05,1,842.15
> view matrix models
> #6,0.99697,-0.077739,-1.7474e-05,907.58,0.077739,0.99697,3.9599e-05,866.53,1.4342e-05,-4.0838e-05,1,883.18
> view matrix models
> #6,0.99697,-0.077739,-1.7474e-05,906.81,0.077739,0.99697,3.9599e-05,866.82,1.4342e-05,-4.0838e-05,1,877.35
> select clear
> volume #1 level 0.07171
> hide #!3 models
> volume #1 level 0.03067
> show #2 models
> show #!3 models
> show #8 models
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs includeMaps true
——— End of log from Tue Aug 30 17:32:38 2022 ———
opened ChimeraX session
> ui mousemode right zoom
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motb-mot3-c17-combination-for-fitting.pdb
Chain information for motb-mot3-c17-combination-for-fitting.pdb #9
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No
description available
i j k l m n o p q r s t u v w x y | No description available
> ui tool show "Side View"
> hide #2 models
> hide #!3 models
> hide #8 models
> hide #!7 models
> show #8 models
> select add #9
143701 atoms, 145248 bonds, 12053 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #9,1,0,0,-57.722,0,1,0,25.634,0,0,1,846.46
> view matrix models #9,1,0,0,793.65,0,1,0,713.66,0,0,1,1049.4
> view matrix models #9,1,0,0,823.37,0,1,0,746.94,0,0,1,1057.4
> view matrix models #9,1,0,0,813.73,0,1,0,751.6,0,0,1,1056.4
> view matrix models #9,1,0,0,808.18,0,1,0,785.45,0,0,1,1058.9
> view matrix models #9,1,0,0,823.22,0,1,0,800.5,0,0,1,1062.7
> view matrix models #9,1,0,0,858.8,0,1,0,854.82,0,0,1,1003.5
> view matrix models #9,1,0,0,862.82,0,1,0,853.31,0,0,1,980.32
> view matrix models #9,1,0,0,876.31,0,1,0,863.42,0,0,1,935.17
> view matrix models #9,1,0,0,885,0,1,0,867.41,0,0,1,900.63
> view matrix models #9,1,0,0,884.62,0,1,0,865.4,0,0,1,884.34
> view matrix models #9,1,0,0,877.23,0,1,0,872.3,0,0,1,883.24
> ui mousemode right "rotate selected models"
> view matrix models
> #9,0.99642,-0.084397,0.0049913,877.08,0.084357,0.9964,0.0078534,872.35,-0.0056362,-0.0074042,0.99996,883.22
> ui tool show "Fit in Map"
> fitmap sel inMap #1
Fit molecule motb-mot3-c17-combination-for-fitting.pdb (#9) to map
scaffold_job802_lafter.mrc (#1) using 143701 atoms
average map value = 0.1735, steps = 112
shifted from previous position = 7.9
rotated from previous position = 4.89 degrees
atoms outside contour = 46107, contour level = 0.030667
Position of motb-mot3-c17-combination-for-fitting.pdb (#9) relative to
scaffold_job802_lafter.mrc (#1) coordinates:
Matrix rotation and translation
0.99999992 0.00039036 -0.00000054 878.92538465
-0.00039036 0.99999992 -0.00009323 878.89718509
0.00000050 0.00009323 1.00000000 878.87579403
Axis 0.23230296 -0.00130232 -0.97264261
Axis point 2249859.27880147 -2639005.73939058 0.00000000
Rotation angle (degrees) 0.02299522
Shift along axis -651.79968535
> hide #6 models
> hide sel atoms
> show sel cartoons
> hide #8 models
> volume #1 level 0.2141
> select subtract #9
Nothing selected
Drag select of 1440 residues
Drag select of 211 residues
Drag select of 223 residues
Drag select of 169 residues
Drag select of 131 residues
Drag select of 153 residues
Drag select of 81 residues
Drag select of 83 residues
Drag select of 84 residues
Drag select of 81 residues
Drag select of 52 residues
Drag select of 82 residues
Drag select of 74 residues
Drag select of 95 residues
> select up
32827 atoms, 33136 bonds, 4102 residues, 1 model selected
> select up
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
Populating font family aliases took 835 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motB_dimer_fitted_C17.pdb selectedOnly true relModel #1
> hide #9 models
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motB_dimer_fitted_C17.pdb
Chain information for motB_dimer_fitted_C17.pdb #10
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No
description available
> volume #1 level 0.1064
> hide #10 atoms
> show #10 cartoons
> volume #1 level 0.01871
> ui tool show "Show Sequence Viewer"
> sequence chain #10/H
Alignment identifier is 10/H
> view matrix models
> #9,1,0.00039036,-5.4087e-07,878.93,-0.00039036,1,-9.3233e-05,878.9,5.0448e-07,9.3233e-05,1,878.88
> ui tool show "Build Structure"
> select add #10
96696 atoms, 97852 bonds, 12240 residues, 2 models selected
> select clear
> select add #10
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
> renumber #10 start 68
Unknown command: renumber #10 start 68
> view matrix models
> #10,1,-0.00024613,-0.0018521,1.8097,0.00024898,1,0.0015383,-1.5402,0.0018517,-0.0015387,1,-0.27508
> select clear
> renumber #10/ start 68
Unknown command: renumber #10/ start 68
> select add #10
48348 atoms, 48926 bonds, 6120 residues, 1 model selected
> renumber sel start 68
Unknown command: renumber sel start 68
> renumber #10/A start 68
Unknown command: renumber #10/A start 68
> close #9
> close #6
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs
——— End of log from Wed Aug 31 17:28:25 2022 ———
opened ChimeraX session
> open /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/motB_dimer_fitted_C17.pdb
Chain information for motB_dimer_fitted_C17.pdb #6
---
Chain | Description
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | No
description available
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> close #10
> hide #6 atoms
> show #6 cartoons
> save /Users/tina/PG/projects/minicell-structure/fitting/lafter-
> scaffold/scaffold-fitted.cxs
——— End of log from Wed Aug 31 17:40:16 2022 ———
opened ChimeraX session
OpenGL version: 4.1 INTEL-16.5.13
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 3.1 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 451.140.1.0.0
SMC Version (system): 2.44f6
Software:
System Software Overview:
System Version: macOS 11.6.8 (20G730)
Kernel Version: Darwin 20.6.0
Time since boot: 1 day 7:16
Graphics/Displays:
Intel Iris Plus Graphics 650:
Chipset Model: Intel Iris Plus Graphics 650
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5927
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650 |
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Apple Intel graphics driver crash.