![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 8, 2021:
- 6:49 PM Dev2021-7-8 edited by
- (diff)
- 6:49 PM Dev2021-7-8 edited by
- (diff)
- 6:26 PM 2021-7-8 edited by
- (diff)
- 5:49 PM Ticket #4874 (Unknown crash) closed by
- can't reproduce: ChimeraX crashed on Windows but the crash report gives no information …
- 5:48 PM Ticket #4880 (OpenGL error starting on Windows 7) created by
- […]
- 4:07 PM Ticket #4879 (Graphics crash, macOS 11.4, Radeon Pro 575X) created by
- […]
- 12:43 PM Ticket #4878 (No graphics shown, Windows 10, graphics driver problem) created by
- […] ChimeraX_Not_Loading.PNG
- 12:30 PM Ticket #4877 (addh failed: TypeError: unsupported operand type(s) for *: 'NoneType' ...) created by
- […]
- 9:55 AM Ticket #4875 (Unknown crash) closed by
- can't reproduce
- 8:28 AM Ticket #4876 (Traceback when bundle already installed) created by
- […]
- 6:32 AM Ticket #4872 (Crash in OpenMM finding clashes) closed by
- can't reproduce: Not going to be able to do much about this without a reproducible test …
- 12:04 AM Ticket #4875 (Unknown crash) created by
- […]
Jul 7, 2021:
- 9:14 PM Ticket #4874 (Unknown crash) created by
- […]
- 4:56 PM Ticket #4840 (Altloc Explorer improvements) closed by
- duplicate: Duplicate of #4168
- 2:20 PM Ticket #4873 (Add "bring" option to fitmap to move associated models) created by
- Begin forwarded message: From: Alpay Burak Seven via ChimeraX-users …
- 1:59 PM Ticket #4854 (Allow specifying frame start, stop and step when opening DCD ...) closed by
- duplicate: Duplicate of #4501
- 1:53 PM Ticket #4861 (Failure running antechamber on Windows) reopened by
- You are right -- the fix isn't in the build. I'll re-close this …
- 1:10 PM Ticket #4859 (AddH: metal may not have alt loc) closed by
- fixed: Use main metal position if it doesn't have alt locs. Also, add alt …
- 12:57 PM Ticket #4872 (Crash in OpenMM finding clashes) created by
- […]
- 11:05 AM Ticket #4870 (Segger: n is None) closed by
- can't reproduce: User tried Segger menu Regions / Color Density Map and it was trying …
- 10:50 AM Ticket #4868 (Crash calculating surface geometry) closed by
- can't reproduce: ChimeraX crashed trying to compute a molecular surface, looks like the …
- 10:37 AM Ticket #4871 (Scenes in mmCIF) created by
- […]
- 10:37 AM Ticket #4857 (Crash opening PDB file) closed by
- fixed: Hi Winston, Yes, ChimeraX 1.2.5 will crash on non-ASCII characters in …
- 9:42 AM Ticket #4870 (Segger: n is None) created by
- […]
- 9:29 AM Ticket #4867 (Crash opening PDB file) closed by
- can't reproduce
- 7:37 AM Ticket #4869 (Treat file suffixes as case independent) created by
- […]
Jul 6, 2021:
- 11:22 PM Ticket #4868 (Crash calculating surface geometry) created by
- […]
- 8:58 PM Ticket #4867 (Crash opening PDB file) created by
- […]
- 7:41 PM Dev2021-7-8 edited by
- (diff)
- 7:40 PM Dev2021-7-8 created by
- 7:38 PM 2021-7-8 created by
- 7:36 PM DeveloperMeetings edited by
- (diff)
- 5:44 PM Ticket #4861 (Failure running antechamber on Windows) closed by
- fixed: Should be fixed in tomorrow's build. Thanks for reporting this problem.
- 1:50 PM Ticket #4862 (Same Python trace shown dozens of times) closed by
- can't reproduce: ChimeraX crashed while trying to show the Save dialog in this line …
- 1:39 PM Ticket #4866 (HBonds: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by
- can't reproduce: Something wonky about user's custom PDB file; probably bad CONECT records
- 1:31 PM Ticket #4864 (Fwd: Trouble accessing Autodock Vina through Chimera) closed by
- nonchimerax: Hi Nicole, You sent this to the address for reporting bugs in our new …
- 12:55 PM Ticket #4866 (HBonds: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […]
- 10:55 AM Ticket #4860 (AddH: crash in simple eval()) closed by
- can't reproduce
- 10:43 AM Ticket #4858 (Crash adding hydrogens) closed by
- can't reproduce
- 10:29 AM Ticket #4865 (Make Windows Mixed Reality use Oculus VR hand controller defaults.) created by
- On Jul 2, 2021, at 7:10 PM, Gökhan Tolun via ChimeraX-users …
- 10:23 AM Ticket #4856 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate
- 10:05 AM Ticket #4855 (Empty Favorites menu) closed by
- not a bug: Hi Andrew, ChimeraX doesn't pre-populate the Favorites menu with …
- 8:40 AM Ticket #4864 (Fwd: Trouble accessing Autodock Vina through Chimera) created by
- […]
- 12:41 AM Ticket #4863 (Crash deleting residues) created by
- […]
- 12:22 AM Ticket #4862 (Same Python trace shown dozens of times) created by
- […]
Jul 5, 2021:
- 7:58 PM Ticket #4861 (Failure running antechamber on Windows) created by
- […] antechanber error.PNG
- 8:41 AM Ticket #4860 (AddH: crash in simple eval()) created by
- […]
- 3:52 AM Ticket #4859 (AddH: metal may not have alt loc) created by
- […]
Jul 4, 2021:
- 12:33 PM Ticket #4858 (Crash adding hydrogens) created by
- […]
- 6:44 AM Ticket #4857 (Crash opening PDB file) created by
- […]
- 2:08 AM Ticket #4856 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
Jul 3, 2021:
Jul 2, 2021:
- 5:04 PM Ticket #4854 (Allow specifying frame start, stop and step when opening DCD ...) created by
- […]
- 10:58 AM Ticket #4853 (Generic Linux build broken) created by
- The generic linux build has been broken since June 23, more than a …
- 10:23 AM Ticket #4852 (Patch of suds_jurko during linux build fails) created by
- In linux unified build output I see the suds_jurko patch added 11 …
Jul 1, 2021:
- 7:34 PM Ticket #4851 (Export atomic models with joints for GLTF animation) created by
- GLTF files can contain "skins" which use "joints" to animate a model, …
- 7:20 PM Ticket #4850 (Add GLTF export of atomic structure morphs) created by
- The GLTF format supports morph animations which could be used to show …
- 5:48 PM Ticket #4686 (Include logged commands in crash reports) closed by
- fixed: Done. Recorded log messages to a temporary file so that after crash …
- 5:44 PM Ticket #4849 (Test of crash report including log) closed by
- worksforme
- 5:41 PM Ticket #4849 (Test of crash report including log) created by
- […]
- 3:35 PM Ticket #4848 (AddH: name 'chain' is not defined) closed by
- duplicate: Hi Jim, Thanks for reporting this problem. It was fixed roughly a …
- 2:15 PM NTTData edited by
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- 2:00 PM NTTData edited by
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- 1:59 PM NTTData edited by
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- 1:55 PM Ticket #4848 (AddH: name 'chain' is not defined) created by
- […]
- 1:52 PM NTTData edited by
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- 1:42 PM NTTData edited by
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- 1:17 PM NTTData edited by
- (diff)
- 11:53 AM 2021-7-1 edited by
- (diff)
Jun 30, 2021:
- 5:54 PM Ticket #4836 (Unknown crash) closed by
- can't reproduce: Hi Yen-Li, Thanks for getting back to us. Yeah, we are going to have …
- 4:36 PM Ticket #4697 (Open dialog vs. required args) closed by
- fixed: Opening a coordinates file will now throw up a structure chooser if …
- 12:32 PM Ticket #4847 (Windows 10 VM) created by
- […]
- 11:56 AM Ticket #4846 (Saving color information) closed by
- not a bug: Hi Doret, The 'END" error is harmless and you can ignore it. We will …
- 11:45 AM Ticket #4844 (Unknown crash under Rosetta emulation) closed by
- can't reproduce
- 2:15 AM Ticket #4846 (Saving color information) created by
- […]
Jun 29, 2021:
- 7:35 PM Ticket #4843 (Unable to install chimerax on ubuntu 21.04) closed by
- limitation: Thank you. I see that you are using Ubuntu 20.10 and that a newer …
- 7:15 PM Ticket #4845 (Traceback parsing atom spec @@display=True) created by
- […]
- 6:56 PM ChangeLog edited by
- (diff)
- 6:53 PM ChangeLog edited by
- (diff)
- 6:49 PM ChangeLog edited by
- (diff)
- 6:22 PM Ticket #4844 (Unknown crash under Rosetta emulation) created by
- […]
- 5:36 PM 2021-7-1 created by
- 5:33 PM DeveloperMeetings edited by
- (diff)
- 4:36 PM Ticket #4831 (Opening MRC file: getcwd: No such file or directory) closed by
- nonchimerax: This error saving an MRC file is because ChimeraX is running in a …
- 4:35 PM Ticket #4843 (Unable to install chimerax on ubuntu 21.04) created by
- […]
- 4:25 PM Ticket #4839 (Crash in chem_group:: find_group) closed by
- can't reproduce: Would need the structure in order to investigate further.
- 4:17 PM Ticket #4828 (3kds assembly 1: index is out of bounds) closed by
- fixed: Fixed. Opened 3kds and clicked log assemblies table assembly 1. …
- 4:14 PM Ticket #4842 (Long atom spec crashes ChimeraX) created by
- […]
- 3:59 PM Ticket #4841 (Atomic molc.cpp uses deprecated Python 3.9 calls) created by
- make install ../../../ChimeraX.app/Contents/bin/ChimeraX --nogui …
- 3:51 PM Ticket #4840 (Altloc Explorer improvements) created by
- Would it be possible to make it more analogous to Rotamers, in that …
- 2:47 PM ChangeLog edited by
- (diff)
- 2:36 PM ChangeLog edited by
- (diff)
- 1:57 PM Ticket #4835 (Crash in mouse modes cursor handling) closed by
- can't reproduce: Hard to fathom the stack traces. The main thread crashed and was in …
- 12:35 PM Ticket #4839 (Crash in chem_group:: find_group) created by
- […]
- 12:11 PM Ticket #4832 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Showing volume maps. OpenGL error computing shadow maps. RTX 2080 Ti …
- 10:49 AM Ticket #4837 (Problems reading AutoDock Vina results) closed by
- duplicate: Hi Simona, The handling of AutoDock Vina files was recently improved …
- 10:09 AM Ticket #4830 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Hi Hui-Ting, Thanks for reporting this problem. It has been fixed in …
- 9:19 AM Ticket #4827 (Unknown problem) closed by
- invalid: No actual problem reported.
- 9:17 AM Ticket #4826 (Freeze in "preset original") closed by
- nonchimerax: As per this report, fixed by graphics driver upgrade
- 9:15 AM Ticket #4825 (Freeze in "preset original") closed by
- nonchimerax: Fixed by later graphics driver upgrade.
- 7:37 AM Ticket #4838 (Unknown crash) created by
- […]
- 4:41 AM Ticket #4837 (Problems reading AutoDock Vina results) created by
- […]
- 3:54 AM Ticket #4836 (Unknown crash) created by
- […]
Jun 28, 2021:
- 10:51 PM Ticket #4835 (Crash in mouse modes cursor handling) created by
- […]
- 11:01 AM Ticket #4834 (Catch "can't write" error) created by
- […]
- 9:51 AM Ticket #4833 (Session restore: 'FeatureBrowser' object has no attribute 'sel_check_box') created by
- […]
- 4:02 AM Ticket #4832 (glDrawBuffer: invalid operation) created by
- […]
- 2:29 AM Ticket #4831 (Opening MRC file: getcwd: No such file or directory) created by
- […]
Jun 27, 2021:
Jun 26, 2021:
- 8:47 AM Ticket #4829 (multiple errors) created by
- […]
- 7:42 AM Ticket #4828 (3kds assembly 1: index is out of bounds) created by
- […]
- 3:50 AM Ticket #4827 (Unknown problem) created by
- […]
- 12:54 AM Ticket #4826 (Freeze in "preset original") created by
- […]
- 12:27 AM Ticket #4825 (Freeze in "preset original") created by
- […]
Jun 25, 2021:
- 7:40 PM Ticket #4823 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() closed by
- nonchimerax: Crash on Mac initializing OpenGL when setting screen on a 2 screen …
- 5:47 PM Ticket #4824 (3-letter code lookup) created by
- Given a ligand structure, find the PDB 3-letter name for it. Email …
- 4:58 PM Ticket #4822 (Nucleotides: object of type 'NoneType' has no len() closed by
- duplicate
- 4:55 PM Ticket #4821 (Crash showing Rapid access at startup) closed by
- duplicate
- 4:54 PM Ticket #4820 (Crash in AtomSearchTree implementation) closed by
- can't reproduce: Could be called from hbonds, clashes, build_structure, or addh. The …
- 4:11 PM Ticket #4823 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() created by
- […]
- 9:31 AM ChangeLog edited by
- (diff)
- 9:28 AM ChangeLog edited by
- (diff)
- 1:31 AM Ticket #4822 (Nucleotides: object of type 'NoneType' has no len() created by
- […]
Jun 24, 2021:
- 9:50 PM Ticket #4821 (Crash showing Rapid access at startup) created by
- […]
- 7:49 PM Ticket #4820 (Crash in AtomSearchTree implementation) created by
- […]
- 7:35 PM 2021-6-24 created by
- 7:29 PM DeveloperMeetings edited by
- (diff)
- 7:11 PM Ticket #4816 (Crash in thread under Rosetta emulation) closed by
- can't reproduce: No info in stack trace of crashed thread 14. Apple M1 processor. …
- 7:04 PM Ticket #4815 (Various OpenGL errors) closed by
- nonchimerax: These ChimeraX errors are caused by bugs in your system OpenGL …
- 5:02 PM Ticket #4819 (Crash in AddH) closed by
- can't reproduce: If the Python stack trace is accurate, it crashed in this line: …
- 4:46 PM ChangeLog edited by
- (diff)
- 2:25 PM Ticket #4819 (Crash in AddH) created by
- […]
- 2:18 PM Ticket #4818 (Error in toolshed error message) closed by
- duplicate
- 2:52 AM Ticket #4818 (Error in toolshed error message) created by
- […]
- 1:26 AM Ticket #4817 (Cannot input '@' into registration form) created by
- […]
- 12:31 AM Ticket #4816 (Crash in thread under Rosetta emulation) created by
- […]
- 12:00 AM Ticket #4815 (Various OpenGL errors) created by
- […]
Jun 23, 2021:
- 5:11 PM Ticket #4814 (Crash initially showing Rapid Access) closed by
- duplicate: I put a fix in for this ChimeraX crash on startup last month. It is …
- 1:58 PM Ticket #4814 (Crash initially showing Rapid Access) created by
- […]
- 11:53 AM Ticket #4809 (Volume viewer logs illegal command) closed by
- fixed: Fixed. Thanks, definitely a bug. Seems unreasonable that the volume …
- 11:00 AM Ticket #4813 (Crash in garbage collection during new-object allocation) closed by
- can't reproduce: It's been 4 months since we've had one of these. Maybe fixed by newer …
- 10:48 AM Ticket #4813 (Crash in garbage collection during new-object allocation) created by
- […]
- 10:46 AM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) closed by
- fixed: Glad you like it! Okay, made bfactor/occupancy editable, with …
- 10:18 AM Ticket #4810 (AddH: name 'chain' is not defined) closed by
- fixed: Only affects structure lacking SEQRES information. Fixed in …
- 9:19 AM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) created by
- […]
- 8:51 AM Ticket #4811 (angle command) closed by
- not a bug: Hi Enrico, The 'angle' command is only available in ChimeraX 1.2 or …
- 8:15 AM Ticket #4811 (angle command) created by
- […]
- 7:31 AM Ticket #4810 (AddH: name 'chain' is not defined) created by
- […]
- 12:29 AM Ticket #4809 (Volume viewer logs illegal command) created by
- […]
Jun 22, 2021:
- 6:43 PM Ticket #4808 (Add GLTF saving of textures) created by
- For NIH 3D model repository NIAID wants to use GLTF. Currently we …
- 6:36 PM 2021-6-17 edited by
- (diff)
- 4:42 PM Ticket #4806 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 6) closed by
- nonchimerax: Same crash as #4803. The traceback shows the crash was while dragging …
- 4:39 PM Ticket #4803 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 5) closed by
- nonchimerax: We got your previous 4 ChimeraX crash reports that were the same Apple …
- 4:20 PM Ticket #4804 (Map fit: 'NoneType' object has no attribute 'scene_position') closed by
- duplicate: Fixed 11 months ago, #3559.
- 12:54 PM Ticket #4720 (Graphics crash, macOS 11.3.1, Radeon Pro 555X) closed by
- nonchimerax: Graphics driver crash.
- 12:44 PM Ticket #4802 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 4) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Apple's graphics drivers …
- 12:24 PM Ticket #4807 (Saved PDB opens with bad record warning) created by
- […] test.pdb
- 11:44 AM Ticket #4806 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 6) created by
- […]
- 11:32 AM Ticket #4805 (ISOLDE: crash in find_clashing_atoms) created by
- […]
- 10:58 AM Ticket #4804 (Map fit: 'NoneType' object has no attribute 'scene_position') created by
- […]
- 10:57 AM Ticket #4803 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 5) created by
- […]
- 10:17 AM Ticket #4802 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 4) created by
- […]
- 8:31 AM Ticket #4780 (ISOLDE: possible error in MD template) closed by
- limitation: Response from Caillan: "Hi, thanks so much for checking the template …
Jun 21, 2021:
- 10:11 AM Ticket #4801 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 3) closed by
- nonchimerax: This is the standard Apple graphics driver crash. The Python …
- 9:34 AM Ticket #4799 (Error in toolshed error message) closed by
- duplicate: Hi, Thanks for reporting this problem. ChimeraX was trying to tell …
- 9:31 AM Ticket #4798 (Crash reading PDB file) closed by
- can't reproduce: Could be the non-ASCII-character crash, which was fixed post-1.2.5
- 9:17 AM Ticket #4795 (Toolshed using internal UI API) closed by
- duplicate
- 8:12 AM Ticket #4801 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 3) created by
- […]
- 6:29 AM Ticket #4800 (ISOLDE: item.data is a method/function, not tuple) created by
- […]
Jun 19, 2021:
- 6:10 AM Ticket #4799 (Error in toolshed error message) created by
- […]
- 12:59 AM Ticket #4798 (Crash reading PDB file) created by
- […]
Jun 18, 2021:
- 9:43 PM Ticket #4797 (tether opacity visually incorrect) closed by
- fixed: Fixed (kind of). The problem is that the cone normal vectors get …
- 8:51 PM Ticket #4792 (Save gltf using instancing to reduce file size) closed by
- fixed: Done. By default atoms have all the sphere geometries copied instead …
- 6:21 PM Ticket #4797 (tether opacity visually incorrect) created by
- When I position a tether with something behind it, if the tether shape …
- 5:55 PM Ticket #4796 (--usedefaults/--nousedefaults startup option does not work) created by
- Greg says these do the same thing as --tools and --notools even though …
- 2:27 PM Ticket #4795 (Toolshed using internal UI API) created by
- […]
- 12:46 PM Ticket #4791 (Map Fit: local variable 'm' referenced before assignment) closed by
- fixed: Fixed. User turned off overlap and correlation radio buttons in fit …
- 11:25 AM Dev2021-6-10 edited by
- (diff)
- 11:24 AM Dev2021-6-10 edited by
- (diff)
- 11:18 AM AddTracUser edited by
- (diff)
- 11:03 AM Ticket #4793 (Qt crash when screen removed on Mac) closed by
- duplicate
- 10:49 AM Ticket #4790 (Unknown crash) closed by
- can't reproduce
- 10:33 AM Ticket #4794 (Dock Prep) created by
- Create Dock Prep equivalent for ChimeraX
- 6:13 AM Ticket #4793 (Qt crash when screen removed on Mac) created by
- […]
- 12:19 AM Ticket #4792 (Save gltf using instancing to reduce file size) created by
- Kristen Browne tried saving a virus capsid to gltf using open 6htx …
Jun 17, 2021:
- 8:38 PM Ticket #4791 (Map Fit: local variable 'm' referenced before assignment) created by
- […]
- 7:00 PM Ticket #4790 (Unknown crash) created by
- […]
- 6:41 PM Ticket #4788 (Failure saving .glb of instanced assembly) closed by
- fixed: Fixed. The GLTF save did not handle the surface correctly when the …
- 6:13 PM NTTData edited by
- (diff)
- 4:52 PM Ticket #4789 ("don't phone home" flag) created by
- For scripting, a flag that prevents contacting the Toolshed at startup
- 4:45 PM Ticket #3643 (Don't protonate O5' for non-terminal nucleic acids) closed by
- fixed
- 2:48 PM Ticket #4787 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 2) closed by
- nonchimerax: Graphics driver crash, macOS 10.16, AMD Radeon Pro 580X with 8GB …
- 2:40 PM NTTData edited by
- (diff)
- 2:30 PM NTTData edited by
- (diff)
- 2:23 PM NTTData edited by
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- 2:21 PM NTTData edited by
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- 2:13 PM NTTData edited by
- (diff)
- 1:52 PM Ticket #4788 (Failure saving .glb of instanced assembly) created by
- […]
- 1:50 PM NTTData edited by
- (diff)
- 1:26 PM NTTData edited by
- (diff)
- 12:50 PM Ticket #4787 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 2) created by
- […]
- 12:40 PM Ticket #4784 (Graphics crash, maOS 11.3, Intel Iris Plus 640) closed by
- nonchimerax: The Mac graphics driver crashed Graphics hardware encountered an …
- 10:42 AM Ticket #4786 (Toolshed using internal UI API) closed by
- duplicate
- 10:41 AM Ticket #4785 (Toolshed using internal UI API) closed by
- duplicate
- 10:37 AM Ticket #4782 (Modeller: 'target_name' referenced before assignment) closed by
- fixed: Hi Bernard, Thanks for reporting this problem. There's one …
- 10:26 AM Ticket #4786 (Toolshed using internal UI API) created by
- […]
- 10:26 AM Ticket #4785 (Toolshed using internal UI API) created by
- […]
- 9:33 AM Ticket #4784 (Graphics crash, maOS 11.3, Intel Iris Plus 640) created by
- […]
- 8:57 AM Ticket #4783 (VirtualGL info) created by
- […]
- 8:55 AM Ticket #4782 (Modeller: 'target_name' referenced before assignment) created by
- […]
- 8:34 AM Ticket #4781 (Error in custom Python script) closed by
- nonchimerax
- 8:29 AM Ticket #4779 (Crash reading PDB file) closed by
- can't reproduce: A crash involving non-ASCII characters in PDB files was fixed after …
- 7:16 AM Ticket #4781 (Error in custom Python script) created by
- […]
- 6:41 AM Ticket #4780 (ISOLDE: possible error in MD template) created by
- […]
- 5:51 AM Ticket #4779 (Crash reading PDB file) created by
- […]
Jun 16, 2021:
- 8:54 AM Ticket #4778 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Azadeh, Thanks for reporting this problem. The issue is that you …
- 4:27 AM Ticket #4778 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 3:07 AM Ticket #4777 (Crash in combine_sym_atoms) created by
- […]
Jun 15, 2021:
- 4:54 PM Ticket #4081 (Sequence Viewer assoc dialog incorrectly says not associated) closed by
- fixed: If no chains are chosen on the left, the association menu is now …
- 4:47 PM Ticket #4776 (Cannot save image to public desktop) closed by
- nonchimerax: You used the Snapshot toolbar icon which saves an image to the desktop …
- 4:31 PM Ticket #4775 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 1) closed by
- nonchimerax: Adjusting volume threshold than crashed in OpenGL swapBuffers call. …
- 3:42 PM Ticket #4772 (PDBQT file: list index out of range) closed by
- fixed: Hi Ana, Thanks for the example file. I have improved the .pdbqt …
- 3:15 PM Ticket #4776 (Cannot save image to public desktop) created by
- […]
- 3:12 PM Ticket #4775 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 1) created by
- […]
- 9:37 AM 2021-6-17 edited by
- (diff)
- 9:36 AM 2021-6-17 edited by
- (diff)
- 9:35 AM 2021-6-17 edited by
- (diff)
- 9:35 AM 2021-6-17 created by
- 9:33 AM DeveloperMeetings edited by
- (diff)
- 4:39 AM Ticket #4774 (Crash hitting "play" button) created by
- […]
Jun 14, 2021:
- 1:15 PM Ticket #4767 (Coulombic: can't invert matrix) closed by
- fixed: Don't try for coplanar positioning if the points involved are collinear.
- 10:53 AM Ticket #4768 (Silhouette artifacts on MacBookPro16,2) closed by
- duplicate: The wrong silhouette edges you see are cause by an Apple graphics …
- 10:42 AM Ticket #4771 (4v88: acceptor has no neighbors) closed by
- fixed: Hi Disha, Thanks for reporting this problem. The missing phosphorus …
- 10:39 AM Ticket #4773 (Make resfit show altlocs) created by
- From discussion on ChimeraX mailing list …
- 9:45 AM Ticket #4769 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 9:23 AM Ticket #4772 (PDBQT file: list index out of range) created by
- […] 2yjb_ZnPth_out.pdbqt
- 5:39 AM Ticket #4771 (4v88: acceptor has no neighbors) created by
- […]
- 2:12 AM Ticket #4770 (stops working) created by
- […]
Jun 13, 2021:
- 8:02 AM Ticket #4769 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 6:49 AM Ticket #4768 (Silhouette artifacts on MacBookPro16,2) created by
- […] img.png
Jun 12, 2021:
Jun 11, 2021:
- 5:28 PM Ticket #4766 (Structure positions is None (Segger holding ref to dead Structure)) closed by
- fixed: Fixed in tomorrow's daily build. The ChimeraX error saving a session …
- 2:30 PM Ticket #4766 (Structure positions is None (Segger holding ref to dead Structure)) created by
- […]
- 1:51 PM Ticket #4765 (RFE: command to list missing and partially missing residues) created by
- Would be nice to have a command to list the missing residues and …
- 12:48 PM Ticket #4764 (Visualize missing parts of an atomic model) created by
- It would be pretty nice to have a toolbar button that shows all the …
- 8:52 AM Ticket #4761 (Unknown crash) closed by
- can't reproduce
- 5:37 AM Ticket #4763 (H-bonds: acceptor not bonded to any atoms) created by
- […]
Jun 10, 2021:
- 9:53 PM Ticket #4762 (Install PyPi packages with a ChimeraX command) created by
- For developers writing ChimeraX Python code it would be convenient if …
- 7:09 PM Dev2021-6-10 edited by
- (diff)
- 7:09 PM 2021-6-10 edited by
- (diff)
- 6:13 PM Ticket #4761 (Unknown crash) created by
- […]
- 3:24 PM Ticket #4760 (swapaa to GLY: Cannot identify backbone) created by
- […]
- 2:39 PM Ticket #4725 (Sample bundle needs updating) closed by
- fixed: Pointed the script to a local clone of the repository.
- 9:54 AM Ticket #4758 (Crash computing surface cap) closed by
- duplicate: I am surprised to see 3 reports of this clip cap computation crash in …
- 9:45 AM Ticket #4757 (Graphics crash, macOS 10.14.6, Geforce GT 750M) closed by
- nonchimerax: Mac graphics driver crash Graphics hardware encountered an error and …
- 8:37 AM Ticket #4759 (dssp unexpectedly slow) created by
- […]
- 2:09 AM Ticket #4758 (Crash computing surface cap) created by
- […]
Jun 9, 2021:
- 3:00 PM Ticket #4757 (Graphics crash, macOS 10.14.6, Geforce GT 750M) created by
- […]
- 10:37 AM Ticket #4755 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate: I fixed this about a month ago, bug #4583. The fix is in the ChimeraX …
- 8:30 AM Ticket #4756 ("incomplete quoted text" ... parsing error?) created by
- After setup commands: open 2gbp open 2fw0 mm #2 to #1 morph #1,2 …
- 8:10 AM Ticket #4755 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
- 7:23 AM Ticket #4754 (bz2 missing) created by
- […]
- 5:56 AM Ticket #4753 (Tolman cone angle not implemented for tridentate or more ligands) created by
- […]
- 5:37 AM Ticket #4752 (Better write-permission error handling) created by
- […]
Jun 8, 2021:
- 6:03 PM Ticket #4560 (selected_atoms not current) closed by
- fixed: I guess I'll assume it worked. Feel free to reopen if it's still a …
- 5:54 PM Ticket #4688 (Unknown crash) closed by
- nonchimerax: Sorry, been a couple of crazy weeks around here. It seems to be a …
- 4:39 PM Ticket #4751 (Align trajectory frames) created by
- per summary (along with many other MD enhancements)
- 4:38 PM Ticket #4750 (Exclude parts of model when reading MD coordinates) created by
- A way to select only some of the elements to be loaded (protein only, …
- 4:36 PM Ticket #4749 (Specify first, last, skip when reading MD frames) created by
- per summary
- 3:20 PM Ticket #4748 (execute command when models opened) created by
- ChimeraX could have a "New Models" settings category, with subsections …
- 12:02 PM Ticket #4747 (2D arrow drag update: self._positions is None) created by
- […]
- 10:44 AM Ticket #4728 (AddH: 'Structure' object has no attribute 'num_coord_sets') closed by
- fixed: Fix available in next daily build
- 10:16 AM Dev2021-6-10 edited by
- (diff)
- 10:03 AM 2021-6-10 created by
- 10:01 AM DeveloperMeetings edited by
- (diff)
- 9:53 AM Ticket #4746 (Crash in compute_cap) closed by
- can't reproduce: This ChimeraX crash was computing the cap on holes of a surface when …
- 9:43 AM Ticket #4743 (Truncated APBS *.dx file) closed by
- not a bug: The error message says SyntaxError: Too few data values in …
- 9:39 AM Ticket #4745 (Crash hiding(?) Rapid Access on Windows 7) closed by
- nonchimerax: There have been many reports of crashes showing rapid access at …
- 9:37 AM Ticket #4746 (Crash in compute_cap) created by
- […]
- 8:59 AM Ticket #4744 (Unknown error) closed by
- can't reproduce
- 8:50 AM Ticket #4741 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by
- duplicate
- 7:08 AM Ticket #4745 (Crash hiding(?) Rapid Access on Windows 7) created by
- […]
- 3:43 AM Ticket #4744 (Unknown error) created by
- […]
- 1:50 AM Ticket #4743 (Truncated APBS *.dx file) created by
- […] IMG_9180.HEIC
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