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Opened 5 years ago
Closed 5 years ago
#3559 closed defect (fixed)
Map fitting: map is None
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Volume Data | Version: | 0.92 |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 0.92 (2020-02-23) Description Attempted to move model Log: UCSF ChimeraX version: 0.92 (2020-02-23) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > close #2 > volume #1 level 0.02417 > volume #1 level 0.06998 > volume #1 level 0.04683 > vop zflip #1 Expected a density maps specifier or a keyword > select #1 2 models selected > vop zflip #1 Expected a density maps specifier or a keyword > vop zflip Expected a density maps specifier or a keyword > vop zflip #1 Expected a density maps specifier or a keyword > vop zflip #0 Expected a density maps specifier or a keyword > ~select #1 Nothing selected Expected a density maps specifier or a keyword > vop zflip #1 Expected a density maps specifier or a keyword > toolshed show "Measure and Color Blobs" > lighting soft > lighting full > lighting soft > lighting soft > lighting simple > lighting soft > set bgColor white > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\relion_locres (use for LocalRes).mrc" Opened relion_locres (use for LocalRes).mrc, grid size 256,256,256, pixel 1.24, shown at level 35.4, step 1, values float32 > hide #!2 models > colour sample 1 map 2 palette red,1:yellow,2:green,3:,cyan,4:blue,5 Missing or invalid "surfaces" argument: invalid surfaces specifier > colour sample 1 map 2 palette 1,red:2,yellow:3,green:4,cyan:5,blue Missing or invalid "surfaces" argument: invalid surfaces specifier > colour sample #1 map #2 palette 1,red:2,yellow:3,green:4,cyan:5,blue Map values for surface "surface": minimum 2.705, mean 2.964, maximum 4.013 > volume #2 level 16.18 > volume #1 level 0.04387 > select #1 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show "Show Volume Menu" > vop zflip #1 Expected a density maps specifier or a keyword > view orient > volume sel step 2 > volume sel step 1 > sop hidedust #1 Expected an atoms specifier or a keyword > sop hidedust map #1 Expected an atoms specifier or a keyword > volume sel style surface > toolshed show "Basic Actions" > sop hideDust map #1 Expected an atoms specifier or a keyword > lighting soft No atoms or bonds selected > view clip false > view clip false > view clip false > view clip false > view clip false > view clip false > ~select #1 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show "Measure and Color Blobs" > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\1jyn.cif" 1jyn.cif title: E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE [more info...] Chain information for 1jyn.cif #3 --- Chain | Description A B C D | Beta-Galactosidase Non-standard residues in 1jyn.cif #3 --- DMS — dimethyl sulfoxide LAT — β-lactose MG — magnesium ion NA — sodium ion Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!1 models > show #!1 models > ui mousemode rightMode "translate selected models" > hide #!1 models > show #!1 models > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ui mousemode rightMode "rotate selected models" > select #1 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show "Fit in Map" Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc (#1) using 37534 atoms average map value = 0.01362, steps = 100 shifted from previous position = 6.2 rotated from previous position = 7.51 degrees atoms outside contour = 32896, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc (#1) coordinates: Matrix rotation and translation 0.90969645 0.39870270 -0.11614020 169.18793775 0.32050167 -0.85191155 -0.41415632 154.37608942 -0.26406642 0.33953336 -0.90276577 156.29798096 Axis 0.97623144 0.19160435 -0.10129143 Axis point 0.00000000 42.64740907 99.27688721 Rotation angle (degrees) 157.29292393 Shift along axis 178.91406755 > vop zflip #1 Expected a density maps specifier or a keyword > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc (#1) using 37534 atoms average map value = 0.01521, steps = 76 shifted from previous position = 3.22 rotated from previous position = 1.32 degrees atoms outside contour = 32496, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc (#1) coordinates: Matrix rotation and translation -0.91818163 -0.14642231 0.36810736 161.21860802 -0.16164793 0.98679065 -0.01068702 157.88853467 -0.36168007 -0.06931645 -0.92972190 150.41235687 Axis -0.08006237 0.99657299 -0.02079159 Axis point 101.54370336 0.00000000 60.43572325 Rotation angle (degrees) 158.52171927 Shift along axis 141.31259472 Unknown command: zflip #1 Expected a density maps specifier or a keyword > volume flip #1 axis z Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > volume flip #2 axis z Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!5 models Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 100 shifted from previous position = 6.52 rotated from previous position = 10.1 degrees atoms outside contour = 12537, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91045003 0.01123724 0.41346644 160.46408999 0.00547137 0.99987064 -0.01512663 162.54922245 -0.41358293 -0.01150985 -0.91039372 155.04665942 Axis 0.00437297 0.99996614 -0.00697138 Axis point 96.78003531 0.00000000 60.79930017 Rotation angle (degrees) 155.57267577 Shift along axis 162.16453334 Average map value = 0.05979 for 37534 atoms, 12537 outside contour > view clip false > transparency #4.1 50 Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > volume #4 level 0.03944 > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\hp\Desktop\movie2.mp4 Movie saved to \C:Users\\...\Desktop\movie2.mp4 > hide #!3 models > volume #!4 style surface > volume #!4 style surface > volume #!4 style mesh > select #4 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > transparency sel 0 > volume sel style surface > colour sample #4 map #5 palette 1,red:2,yellow:3,green:4,cyan:5,blue Map values for surface "surface": minimum 2.705, mean 2.975, maximum 4.331 > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\hp\Desktop\movie3.mp4 Movie saved to \C:Users\\...\Desktop\movie3.mp4 > show #!3 models > ~select #4 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ui mousemode rightMode "translate selected models" Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!3 models > show #!3 models > hide #!4 models > show #!4 models > save C:\Users\hp\Desktop\image1.png supersample 3 > hide #!4 models > show #!4 models > volume #4 level 0.0419 > volume #4 level 0.0479 > volume #4 level 0.047 Average map value = 0.05979 for 37534 atoms, 13621 outside contour Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 44 shifted from previous position = 0.0101 rotated from previous position = 0.00408 degrees atoms outside contour = 13612, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044382 0.01123716 0.41348011 160.46333215 0.00549995 0.99987144 -0.01506311 162.55464539 -0.41359620 -0.01144003 -0.91038857 155.05554619 Axis 0.00438044 0.99996635 -0.00693650 Axis point 96.77999336 0.00000000 60.80053526 Rotation angle (degrees) 155.57183350 Shift along axis 162.17653190 Average map value = 0.05979 for 37534 atoms, 13612 outside contour Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 44 shifted from previous position = 0.00325 rotated from previous position = 0.0103 degrees atoms outside contour = 13610, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044612 0.01123734 0.41347504 160.46376572 0.00557420 0.99987347 -0.01490028 162.55395527 -0.41359015 -0.01126114 -0.91039355 155.05315571 Axis 0.00439991 0.99996688 -0.00684705 Axis point 96.77654397 0.00000000 60.79264422 Rotation angle (degrees) 155.57219706 Shift along axis 162.19294071 Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05978, steps = 28 shifted from previous position = 0.0102 rotated from previous position = 0.0146 degrees atoms outside contour = 13618, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044576 0.01124040 0.41347576 160.46316439 0.00547135 0.99987053 -0.01513402 162.55385419 -0.41359233 -0.01151647 -0.91038937 155.04211876 Axis 0.00437380 0.99996611 -0.00697506 Axis point 96.77949238 0.00000000 60.79703107 Rotation angle (degrees) 155.57208594 Shift along axis 162.16875049 Fit map 1jyn.cif map 5 in map postprocess_masked.mrc z flip using 140113 points correlation = 0.8113, correlation about mean = 0.764, overlap = 1695 steps = 40, shift = 0.026, angle = 0.0145 degrees Position of 1jyn.cif map 5 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91034965 0.01124419 0.41368721 160.46808275 0.00551379 0.99987166 -0.01504337 162.56247581 -0.41380326 -0.01141378 -0.91029480 155.06697625 Axis 0.00438612 0.99996640 -0.00692481 Axis point 96.79222600 0.00000000 60.79540867 Rotation angle (degrees) 155.55880252 Shift along axis 162.18703755 Average map value = 0.05979 for 37534 atoms, 13603 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 40, shift = 0.00912, angle = 0.0125 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91043590 0.01120529 0.41349841 160.46295866 0.00545678 0.99987141 -0.01508055 162.55445132 -0.41361421 -0.01147354 -0.91037997 155.06799766 Axis 0.00436082 0.99996634 -0.00694987 Axis point 96.78379518 0.00000000 60.80670631 Rotation angle (degrees) 155.57069090 Shift along axis 162.17102784 Average map value = 0.05979 for 37534 atoms, 13611 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Average map value = 0.05979 for 37534 atoms, 13611 outside contour Correlation = 0.8035, Correlation about mean = 0.5174, Overlap = 1.369e+04 Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5173, overlap = 1.369e+04 steps = 40, shift = 0.0182, angle = 0.0102 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044200 0.01120373 0.41348503 160.46452156 0.00552919 0.99987346 -0.01491778 162.55262018 -0.41359983 -0.01129556 -0.91038873 155.05057045 Axis 0.00437935 0.99996688 -0.00686066 Axis point 96.77899198 0.00000000 60.79155517 Rotation angle (degrees) 155.57157827 Shift along axis 162.18621645 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 44, shift = 0.00518, angle = 0.00954 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044618 0.01118228 0.41347641 160.46250653 0.00544157 0.99987182 -0.01505906 162.55659347 -0.41359179 -0.01146054 -0.91039032 155.05181675 Axis 0.00435079 0.99996645 -0.00694080 Axis point 96.78146939 0.00000000 60.79878443 Rotation angle (degrees) 155.57209159 Shift along axis 162.17309422 Average map value = 0.05979 for 37534 atoms, 13610 outside contour Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 40, shift = 0.0222, angle = 0.00379 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044479 0.01118125 0.41347951 160.46258800 0.00546791 0.99987259 -0.01499849 162.55709193 -0.41359451 -0.01139446 -0.91038991 155.07427871 Axis 0.00435742 0.99996665 -0.00690766 Axis point 96.78294858 0.00000000 60.80730708 Rotation angle (degrees) 155.57191349 Shift along axis 162.17967271 Average map value = 0.05979 for 37534 atoms, 13613 outside contour Fit map 1jyn.cif map 2.2 in map postprocess_masked.mrc z flip using 652061 points correlation = 0.7272, correlation about mean = 0.3047, overlap = 3.061e+04 steps = 44, shift = 0.0202, angle = 0.00518 degrees Position of 1jyn.cif map 2.2 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91045266 0.01122516 0.41346098 160.46331978 0.00547652 0.99987122 -0.01508627 162.55347667 -0.41357707 -0.01147104 -0.91039687 155.05407590 Axis 0.00437115 0.99996629 -0.00695065 Axis point 96.77997332 0.00000000 60.80165836 Rotation angle (degrees) 155.57303601 Shift along axis 162.17168010 Average map value = 0.05979 for 37534 atoms, 13612 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > show #!6 models > hide #!3 models > hide #!4 models > volume #6 level 2.176 > close > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\1jyn.cif" 1jyn.cif title: E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE [more info...] Chain information for 1jyn.cif #1 --- Chain | Description A B C D | Beta-Galactosidase Non-standard residues in 1jyn.cif #1 --- DMS — dimethyl sulfoxide LAT — β-lactose MG — magnesium ion NA — sodium ion > open "C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > ui mousemode rightMode "translate selected models" > select #2 2 models selected Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Expected a keyword > volume flip #2 axis z Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 300, in _model_moved xf = self._relative_position() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger "model position changed": AttributeError: 'NoneType' object has no attribute 'scene_position' File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. OpenGL version: 3.3.13587 Core Profile Forward-Compatible Context 20.2.2 26.20.15019.19000 OpenGL renderer: AMD Radeon(TM) R5 Graphics OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Volume Data |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Map fitting: map is None |
| Version: | → 0.92 |
comment:2 by , 5 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Fixed.
Fit map panel was set to report new correlation values as user moves fit model, but fit model was set to selected atoms and there were no atoms selected. Made code handle this case.
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Somewhat old version, so problem may already have been fixed. Certainly the pixmap-conversion error has been.