Error in toolshed error message

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
> close session

> open "D:\Dropbox (Technion Dropbox)\17. RAMI P5CS\P5CS\2h5g.pdb" format pdb

2h5g.pdb title:  
Crystal structure of human pyrroline-5-carboxylate synthetase [more info...]  
  
Chain information for 2h5g.pdb #1  
---  
Chain | Description  
A B | δ 1-pyrroline-5-carboxylate synthetase  
  
Non-standard residues in 2h5g.pdb #1  
---  
SO4 — sulfate ion  
  

> select ::name="HOH"

277 atoms, 277 residues, 1 model selected  

> hide sel atoms

> select /B:362-794

3226 atoms, 3274 bonds, 4 pseudobonds, 425 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

> select ::name="SO4"

30 atoms, 24 bonds, 6 residues, 1 model selected  

> select clear

> select clear

> select clear

Drag select of 15 atoms, 12 bonds  

> hide sel atoms

> select /A:361-793

3122 atoms, 3169 bonds, 4 pseudobonds, 417 residues, 2 models selected  

> lighting flat

> lighting simple

> lighting flat

> select clear

> color A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange
> cartoons

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange
> cartoons byelement

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange
> cartoons byatom

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color byelement A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange cartoons

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color residue A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange cartoonsre

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> select /A:361-793

3122 atoms, 3169 bonds, 4 pseudobonds, 417 residues, 2 models selected  

> select sequence A:143,144,305,364,638-370,373,375,398-401,425,452,457-459

Nothing selected  

> select sequence A:143,144,305,364,638-370,373,375,398-401,425,452,457-459

Nothing selected  

> select sequence A:143,144,305,364,638-370,373,375,398-401,425,452,457-459

Nothing selected  

> select sequence A:143,144,305,364,638-370,373,375,398-401,425,452,457-459

Nothing selected  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange cartoonsre

> color byattribute bfactor /
> A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange cartoonsre

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange cartoonsr

> color byattribute bfactor /
> A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange cartoonsr

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange cartoons

> color byattribute bfactor /
> A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange cartoons

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> orange

> color byattribute bfactor /
> A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 orange

Expected a collection of one of 'atoms', 'cartoons', 'ribbons', or 'surfaces'
or a keyword  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> cartoons orange

> color byattribute bfactor /
> A:143,144,305,364,638-370,373,375,398-401,425,452,457-459 cartoons orange

Expected ',' or a keyword  

> color bfactor / A:143,144,305,364,638-370,373,375,398-401,425,452,457-459
> cartoons

15 residues, atom bfactor range 43.3 to 101  

> undo

> open "D:/Dropbox (Technion Dropbox)/17. RAMI P5CS/GSH_model.sdf"

Drag select of 37 atoms, 36 bonds  

> toolshed show

Downloading bundle SEQCROW-0.25.2-py3-none-any.whl  

Errors may have occurred when running pip:  

pip standard error:  
\---  
WARNING: The script send2trash.exe is installed in
'C:\Users\GOTTLIEBLAB\AppData\Local\UCSF\ChimeraX\Python37\Scripts' which is
not on PATH.  
Consider adding this directory to PATH or, if you prefer to suppress this
warning, use --no-warn-script-location.  
WARNING: You are using pip version 20.2.2; however, version 21.1.2 is
available.  
You should consider upgrading via the 'C:\Program Files\ChimeraX
1.1\bin\ChimeraX.exe -m pip install --upgrade pip' command.  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing c:\users\gottlieblab\downloads\seqcrow-0.25.2-py3-none-any.whl  
Requirement already satisfied: ChimeraX-Core~=1.1 in c:\program files\chimerax
1.1\bin\lib\site-packages (from SEQCROW==0.25.2) (1.1)  
Requirement already satisfied: scipy in c:\program files\chimerax
1.1\bin\lib\site-packages (from SEQCROW==0.25.2) (1.4.1)  
Collecting Send2Trash  
Downloading Send2Trash-1.7.1-py3-none-any.whl (17 kB)  
Requirement already satisfied: numpy>=1.13.3 in c:\program files\chimerax
1.1\bin\lib\site-packages (from scipy->SEQCROW==0.25.2) (1.18.5+mkl)  
Installing collected packages: Send2Trash, SEQCROW  
Successfully installed SEQCROW-0.25.2 Send2Trash-1.7.1  
Lock 2261799278088 acquired on
C:\Users\GOTTLIEBLAB\AppData\Local\UCSF\ChimeraX\Cache\1.1\toolshed\bundle_info.cache.lock  
Lock 2261799278088 released on
C:\Users\GOTTLIEBLAB\AppData\Local\UCSF\ChimeraX\Cache\1.1\toolshed\bundle_info.cache.lock  
\---  

Successfully installed SEQCROW-0.25.2 Send2Trash-1.7.1  
Installed SEQCROW (0.25.2)  
resumed SEQCROW queue  
adding Gaussian format  
adding ORCA format  
adding Psi4 format  
adding Gaussian format  
adding ORCA format  
adding Psi4 format  
adding Gaussian format  

local job type Gaussian from SEQCROW supplanted that from SEQCROW  

adding ORCA format  

local job type ORCA from SEQCROW supplanted that from SEQCROW  

adding Psi4 format  

local job type Psi4 from SEQCROW supplanted that from SEQCROW  

adding Gaussian format  

file format Gaussian from SEQCROW supplanted that from SEQCROW  

adding ORCA format  

file format ORCA from SEQCROW supplanted that from SEQCROW  

adding Psi4 format  

file format Psi4 from SEQCROW supplanted that from SEQCROW  

Downloading bundle ChimeraX_AddH-2.1.3-py3-none-any.whl  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\help_viewer\tool.py", line 389, in download_finished  
session=self.session)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 903, in install_bundle  
_install_bundle(self, bundle, logger, per_user=per_user, reinstall=reinstall,
session=session, no_deps=no_deps)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolshed_utils\\__init__.py", line 213, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle.name)  
AttributeError: 'str' object has no attribute 'name'  
  
AttributeError: 'str' object has no attribute 'name'  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\toolshed_utils\\__init__.py", line 213, in _install_bundle  
raise ToolshedInstalledError("bundle %r already installed" % bundle.name)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1660/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Enterprise (Build 19042)
Memory: 34,270,617,600
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-9700KF CPU @ 3.60GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    gdcm: 2.8.8
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5+mkl
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pywin32: 228
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    Send2Trash: 1.7.1
    SEQCROW: 0.25.2
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2
    WMI: 1.5.1