Opened 4 years ago
Closed 4 years ago
#4778 closed defect (duplicate)
'SaveModelOptionWidget' object has no attribute '_name'
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-5.4.0-74-generic-x86_64-with-debian-buster-sid ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /u/azsha/Downloads/6dzz.pdb 6dzz.pdb title: Cryo-em structure of the wild-type human serotonin transporter In complex with ibogaine and 15B8 fab In the inward conformation [more info...] Chain information for 6dzz.pdb #1 --- Chain | Description A | sodium-dependent serotonin transporter B | 15B8 antibody heavy chain C | 15B8 antibody light chain Non-standard residues in 6dzz.pdb #1 --- HJM — (5Β)-12-methoxyibogamine LMT — dodecyl-β-D-maltoside NAG — 2-acetamido-2-deoxy-β-D-glucopyranose > open /u/azsha/Downloads/emd_8943.map Opened emd_8943.map, grid size 380,380,380, pixel 0.823, shown at level 3.8, step 2, values float32 > volume #2 level 6.813 > hide #1 models > show #1 models > hide #!2 models > show #!2 models > volume #2 step 1 > volume #2 step 2 > volume #2 step 4 > volume #2 step 2 > volume #2 level 8 > volume #2 level 10 > volume #2 level 5 > volume #2 level 6 > volume #2 level 7 > volume #2 level 8 > volume #2 level 8 > volume #2 level 6.751 > volume #2 style image > volume #2 style mesh > volume #2 style surface > volume #2 color #73d216 > volume #2 change image level -1.521,0 level 3.799,0.8 level 27.09,1 > volume #2 color #888a85 > set bgColor white > volume dataCacheSize Missing "dataCacheSize" keyword's argument > ui mousemode right "map eraser" > hide #!2 models > show #!2 models > volume erase #2 center 172.59,154.93,106.97 radius 32.525 > volume erase #4 center 179.68,151.24,91.214 radius 32.525 Traceback (most recent call last): File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/ui/gui.py", line 1574, in <lambda> action.triggered.connect(lambda arg, cb = callback: cb()) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/dialog.py", line 102, in <lambda> lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/dialog.py", line 113, in show_save_file_dialog _dlg.display(session, **kw) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/dialog.py", line 47, in display self._current_option) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/manager.py", line 91, in save_args_string_from_widget provider_info.format_name, self).save_args_string_from_widget(widget) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/map/__init__.py", line 189, in save_args_string_from_widget return widget.options_string() File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/options.py", line 35, in options_string raise UserError("No %s to save" % self._name.lower()) AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/options.py", line 35, in options_string raise UserError("No %s to save" % self._name.lower()) See log for complete Python traceback. Traceback (most recent call last): File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/toolbar/tool.py", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/core/toolshed/info.py", line 363, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py", line 1273, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/toolbar/__init__.py", line 38, in run_provider providers.run_provider(session, name) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/toolbar/providers.py", line 45, in run_provider what(session) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/toolbar/providers.py", line 27, in _file_save show_save_file_dialog(session) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/dialog.py", line 113, in show_save_file_dialog _dlg.display(session, **kw) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/dialog.py", line 47, in display self._current_option) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/manager.py", line 91, in save_args_string_from_widget provider_info.format_name, self).save_args_string_from_widget(widget) File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/map/__init__.py", line 189, in save_args_string_from_widget return widget.options_string() File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/options.py", line 35, in options_string raise UserError("No %s to save" % self._name.lower()) AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' File "/opt/bioxray/programs/chimerax-1.1/lib/python3.7/site- packages/chimerax/save_command/options.py", line 35, in options_string raise UserError("No %s to save" % self._name.lower()) See log for complete Python traceback. OpenGL version: 3.3 (Core Profile) Mesa 20.0.8 OpenGL renderer: llvmpipe (LLVM 10.0.0, 256 bits) OpenGL vendor: VMware, Inc. Manufacturer: Hewlett-Packard Model: HP Z440 Workstation OS: Ubuntu 18.04 bionic Architecture: 64bit ELF CPU: 8 Intel(R) Xeon(R) CPU E5-1620 v3 @ 3.50GHz Cache Size: 10240 KB Memory: total used free shared buff/cache available Mem: 15G 13G 1.1G 206M 1.0G 1.7G Swap: 4.8G 2.8G 2.0G Graphics: 02:00.0 VGA compatible controller [0300]: NVIDIA Corporation GM200 [GeForce GTX 980 Ti] [10de:17c8] (rev a1) Subsystem: Micro-Star International Co., Ltd. [MSI] GM200 [GeForce GTX 980 Ti] [1462:3230] Kernel driver in use: nvidia PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.0 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 distro: 1.5.0 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
Component: | Unassigned → Input/Output |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → 'SaveModelOptionWidget' object has no attribute '_name' |
comment:2 by , 4 years ago
Resolution: | → duplicate |
---|---|
Status: | accepted → closed |
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Hi Azadeh,
--Eric