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#4835 closed defect (can't reproduce)
Crash in mouse modes cursor handling
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | General Controls | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x0000000204b62e00 (most recent call first):
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 514 in _cursor_position
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py", line 472 in mouse_pause_tracking
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [22502]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [22502]
User ID: 501
Date/Time: 2021-06-29 14:46:49.014 +0900
OS Version: macOS 11.4 (20F71)
Report Version: 12
Anonymous UUID: 2C3E8800-2E78-DB12-0647-5A6DBF860B44
Sleep/Wake UUID: AF78BCA6-7A0B-45D6-B54B-59F82A32992C
Time Awake Since Boot: 42000 seconds
Time Since Wake: 410 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000014b430020
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x14b430020:
shared memory 14b266000-14b2e6000 [ 512K] r--/r-- SM=SHM
--> mapped file 14b2e6000-14b455000 [ 1468K] r-x/rwx SM=COW Object_id=5474daeb
mapped file 14b455000-14b46d000 [ 96K] rw-/rwx SM=COW Object_id=587ae0eb
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2031392e __pthread_kill + 10
2 libsystem_c.dylib 0x00007fff20226be5 raise + 26
3 libsystem_platform.dylib 0x00007fff20387d7d _sigtramp + 29
4 select.cpython-38-darwin.so 000000000000000000 0 + 0
5 ??? 0x00006000005dc390 ???
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffd1e858 0x7ffdffd1d000 + 6232
1 runtime 0x00007ffdffd28d50 0x7ffdffd1d000 + 48464
2 runtime 0x00007ffdffd29a20 0x7ffdffd1d000 + 51744
Thread 2:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 3:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 4:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 5:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 6:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 7:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 8:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000010ebfe27b ???
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 9:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 10:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 11:: ThreadPoolServiceThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 ??? 0x000000012e952cc7 ???
3 ??? 0x000000012e8db62b ???
4 ??? 0x000000012e89f7cb ???
5 ??? 0x000000012e8e6a94 ???
6 ??? 0x000000012e8faa7d ???
7 ??? 0x000000012e943e07 ???
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 12:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e8f0778 ???
4 ??? 0x000000012e8f1150 ???
5 ??? 0x000000012e8f0cd4 ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 13:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e8f0778 ???
4 ??? 0x000000012e8f0e3d ???
5 ??? 0x000000012e8f0c44 ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 14:: Chrome_IOThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 ??? 0x000000012e952cc7 ???
3 ??? 0x000000012e8db62b ???
4 ??? 0x000000012e89f7cb ???
5 ??? 0x000000013281ff06 ???
6 ??? 0x000000012e8faa7d ???
7 ??? 0x000000012e943e07 ???
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 16:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e8f0778 ???
4 ??? 0x000000012e8f1150 ???
5 ??? 0x000000012e8f0cd4 ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 17:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e8f0778 ???
4 ??? 0x000000012e8f1150 ???
5 ??? 0x000000012e8f0cd4 ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 18:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e8f0778 ???
4 ??? 0x000000012e8f0e3d ???
5 ??? 0x000000012e8f0cd4 ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 19:: CompositorTileWorker1
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x000000012e93fe18 ???
3 ??? 0x000000012fbf75f8 ???
4 ??? 0x000000012e943e07 ???
5 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 20:: Chrome_InProcGpuThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e87020f ???
4 ??? 0x000000012e8db62b ???
5 ??? 0x000000012e89f7cb ???
6 ??? 0x000000012e8faa7d ???
7 ??? 0x000000012e943e07 ???
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 21:: Chrome_ChildIOThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 ??? 0x000000012e952cc7 ???
3 ??? 0x000000012e8db62b ???
4 ??? 0x000000012e89f7cb ???
5 ??? 0x000000012e8faa7d ???
6 ??? 0x000000012e943e07 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 22:: VizCompositorThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 23:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 24:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 25:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 26:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8f076a ???
5 ??? 0x000000012e8f1150 ???
6 ??? 0x000000012e8f0d34 ???
7 ??? 0x000000012e943e07 ???
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 27:: MemoryInfra
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 28:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 29:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 30:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 31:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 32:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 33:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 34:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 35:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 36:: Thread (pooled)
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 ??? 0x0000000125ea3aaf ???
3 ??? 0x0000000125ea377e ???
4 ??? 0x0000000125ea369d ???
5 ??? 0x0000000125e9fccd ???
6 ??? 0x0000000125e9b619 ???
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 37:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 38:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8701db ???
5 ??? 0x000000012e8db62b ???
6 ??? 0x000000012e89f7cb ???
7 ??? 0x000000012e8faa7d ???
8 ??? 0x000000012e943e07 ???
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 39:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 40:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 41:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 42:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 43:: com.apple.NSEventThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff2043b8c5 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20439f7b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20439380 CFRunLoopRunSpecific + 567
5 ??? 0x00007fff22cea68a ???
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 44:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 ??? 0x000000012e948492 ???
3 ??? 0x000000012e9482cf ???
4 ??? 0x000000012e8f076a ???
5 ??? 0x000000012e8f0e3d ???
6 ??? 0x000000012e8f0c74 ???
7 ??? 0x000000012e943e07 ???
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 45:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 46:
0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000204b62e00 rcx: 0x0000000000000000 rdx: 0x0000000000000000
rdi: 0xed57cd7a383edd65 rsi: 0x000000014d046088 rbp: 0xed57cd7a383edd65 rsp: 0x000000014d046088
r8: 0x000000000000000a r9: 0xed57cd7a383edd65 r10: 0x0000000204b62e00 r11: 0x00007fff20226bcb
r12: 0x0000000000000103 r13: 0x0000000000000005 r14: 0x000000000000000a r15: 0x0000000000000016
rip: rfl: 0x0000000000000283
Binary Images:
0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
0x204a8b000 - 0x204b26fff dyld (852) /usr/lib/dyld
0x7ffdffd1d000 - 0x7ffdffd90fff +runtime (203.46) /Library/Apple/*/runtime
0x7fff2007a000 - 0x7fff2007bfff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib
0x7fff2007c000 - 0x7fff200b1fff libxpc.dylib (2038.120.1) /usr/lib/system/libxpc.dylib
0x7fff200b2000 - 0x7fff200c9fff libsystem_trace.dylib (1277.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff200ca000 - 0x7fff20167fff libcorecrypto.dylib (1000.120.2) /usr/lib/system/libcorecrypto.dylib
0x7fff20168000 - 0x7fff20194fff libsystem_malloc.dylib (317.121.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff20195000 - 0x7fff201d9fff libdispatch.dylib (1271.120.2) /usr/lib/system/libdispatch.dylib
0x7fff201da000 - 0x7fff20213fff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib
0x7fff20214000 - 0x7fff20216fff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib
0x7fff20217000 - 0x7fff2029ffff libsystem_c.dylib (1439.100.3) /usr/lib/system/libsystem_c.dylib
0x7fff202a0000 - 0x7fff202f5fff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib
0x7fff202f6000 - 0x7fff2030bfff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib
0x7fff2030c000 - 0x7fff2033bfff libsystem_kernel.dylib (7195.121.3) /usr/lib/system/libsystem_kernel.dylib
0x7fff2033c000 - 0x7fff20347fff libsystem_pthread.dylib (454.120.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff20348000 - 0x7fff20383fff libdyld.dylib (852) /usr/lib/system/libdyld.dylib
0x7fff20384000 - 0x7fff2038dfff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib
0x7fff2038e000 - 0x7fff203b9fff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib
0x7fff203ba000 - 0x7fff20857fff com.apple.CoreFoundation (6.9 - 1776.103) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff2244d000 - 0x7fff226acfff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib
0x7fff226ad000 - 0x7fff226b6fff libsystem_darwin.dylib (1439.100.3) /usr/lib/system/libsystem_darwin.dylib
0x7fff22acc000 - 0x7fff22ad7fff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib
0x7fff24a61000 - 0x7fff24a6ffff libsystem_networkextension.dylib (1295.120.5) /usr/lib/system/libsystem_networkextension.dylib
0x7fff24ace000 - 0x7fff24ae4fff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib
0x7fff261dd000 - 0x7fff261e4fff libsystem_symptoms.dylib (1431.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff284ef000 - 0x7fff284fffff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib
0x7fff2920b000 - 0x7fff2920efff libsystem_configuration.dylib (1109.120.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff2920f000 - 0x7fff29213fff libsystem_sandbox.dylib (1441.120.5) /usr/lib/system/libsystem_sandbox.dylib
0x7fff29e13000 - 0x7fff29e15fff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib
0x7fff2a3b1000 - 0x7fff2a3bdfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff2a3be000 - 0x7fff2a3c2fff libsystem_coreservices.dylib (127.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff2a5bf000 - 0x7fff2a5d1fff libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff2a5d2000 - 0x7fff2a61dfff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib
0x7fff2a61f000 - 0x7fff2a624fff libmacho.dylib (980) /usr/lib/system/libmacho.dylib
0x7fff2a641000 - 0x7fff2a64cfff libcommonCrypto.dylib (60178.120.3) /usr/lib/system/libcommonCrypto.dylib
0x7fff2a64d000 - 0x7fff2a657fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib
0x7fff2a658000 - 0x7fff2a65ffff liboah.dylib (203.46) /usr/lib/liboah.dylib
0x7fff2a660000 - 0x7fff2a66afff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib
0x7fff2a66b000 - 0x7fff2a672fff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff2a673000 - 0x7fff2a675fff libsystem_collections.dylib (1439.100.3) /usr/lib/system/libsystem_collections.dylib
0x7fff2a676000 - 0x7fff2a678fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff2a679000 - 0x7fff2a67bfff libremovefile.dylib (49.120.1) /usr/lib/system/libremovefile.dylib
0x7fff2a67c000 - 0x7fff2a67cfff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib
0x7fff2a67d000 - 0x7fff2a684fff libsystem_dnssd.dylib (1310.120.71) /usr/lib/system/libsystem_dnssd.dylib
0x7fff2a685000 - 0x7fff2a68afff libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff2a68b000 - 0x7fff2a68cfff libSystem.B.dylib (1292.120.1) /usr/lib/libSystem.B.dylib
0x7fff2a68d000 - 0x7fff2a690fff libfakelink.dylib (3) /usr/lib/libfakelink.dylib
0x7fff2a691000 - 0x7fff2a691fff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
0x7fff2dbe7000 - 0x7fff2dbe7fff liblaunch.dylib (2038.120.1) /usr/lib/system/liblaunch.dylib
0x7fff30076000 - 0x7fff30076fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib
0x7fff5813a000 - 0x7fff58155fff libJapaneseConverter.dylib (90) /System/Library/CoreServices/Encodings/libJapaneseConverter.dylib
Translated Code Information:
tmp0: 0xffffffffffffffff tmp1: 0x00007ffe942fea8c tmp2: 0x00007fff20313924
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=518.8M resident=0K(0%) swapped_out_or_unallocated=518.8M(100%)
Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 2880K 6
CG image 80K 8
CoreAnimation 80K 11
CoreGraphics 12K 2
CoreUI image data 2320K 18
Foundation 48K 2
Kernel Alloc Once 1384K 5
MALLOC 355.2M 69
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 896.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 6
OpenGL GLSL 384K 5
Rosetta Arena 2048K 1
Rosetta Generic 1568K 389
Rosetta IndirectBranch 2048K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 920K 92
Rosetta Thread Context 920K 92
STACK GUARD 44K 11
Stack 165.7M 46
Stack Guard 56.1M 35
VM_ALLOCATE 98.1M 166
VM_ALLOCATE (reserved) 160.0M 8 reserved VM address space (unallocated)
__DATA 500K 51
__DATA_CONST 2985K 41
__DATA_DIRTY 95K 24
__LINKEDIT 506.3M 5
__OBJC_RO 70.2M 1
__OBJC_RW 2480K 2
__TEXT 12.6M 51
__UNICODE 588K 1
dylib 2088K 23
dylib (reserved) 88K 6 reserved VM address space (unallocated)
mapped file 5.3G 861
shared memory 4564K 36
unshared pmap 10.5M 6
=========== ======= =======
TOTAL 8.1G 2101
TOTAL, minus reserved VM space 6.7G 2101
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.6.4
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 19:32
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2560 x 1600
UI Looks like: 1280 x 800 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (3)
comment:1 by , 4 years ago
| Component: | Unassigned → General Controls |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in mouse modes cursor handling |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
Hard to fathom the stack traces. The main thread crashed and was in
4 select.cpython-38-darwin.so 000000000000000000 0 + 0
Maybe that is simply wrong -- why does it give the address of that routine as 0? This is on Apple M1 CPU with Rosetta emulation. From the Python traceback it seems it was getting the cursor position.
comment:3 by , 4 years ago
Same crash reported 5 months ago, #4210, also with Apple M1 cpu and macOS 11.2.
Note:
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If the Python stack trace is accurate, the crash is in: