The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [18566]
Path: /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.0.0 (1.0.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [18566]
User ID: 503
Date/Time: 2021-06-23 13:48:01.855 -0400
OS Version: Mac OS X 10.15.7 (19H2)
Report Version: 12
Bridge OS Version: 4.6 (17P6610)
Anonymous UUID: B03EA75F-E4D6-7B22-94DA-8FD95C1FFF44
Sleep/Wake UUID: 0771C74B-EF2C-4191-B32C-9F6F2ECEE3AB
Time Awake Since Boot: 1000000 seconds
Time Since Wake: 12000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 000000010d821000-000000010d822000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.0.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff684c433a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff68580e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff683db93e raise + 26
3 libsystem_platform.dylib 0x00007fff685755fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x000000010d898990 tupletraverse + 64
6 org.python.python 0x000000010d97e933 collect + 2083
7 org.python.python 0x000000010d97f0de _PyObject_GC_Alloc + 286
8 org.python.python 0x000000010d97f1b4 _PyObject_GC_New + 20
9 org.python.python 0x000000010d87e75b new_dict_with_shared_keys + 171
10 org.python.python 0x000000010d87e972 _PyObjectDict_SetItem + 450
11 org.python.python 0x000000010d88b591 _PyObject_GenericSetAttrWithDict + 369
12 org.python.python 0x000000010d88a94c PyObject_SetAttr + 108
13 org.python.python 0x000000010d91c5b5 _PyEval_EvalFrameDefault + 13781
14 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
15 org.python.python 0x000000010d922b64 call_function + 772
16 org.python.python 0x000000010d91f78a _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
18 org.python.python 0x000000010d922b64 call_function + 772
19 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
20 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
21 org.python.python 0x000000010d922b64 call_function + 772
22 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
23 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
24 org.python.python 0x000000010d922b64 call_function + 772
25 org.python.python 0x000000010d91f7a7 _PyEval_EvalFrameDefault + 26567
26 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
27 org.python.python 0x000000010d84d377 _PyFunction_FastCallDict + 455
28 org.python.python 0x000000010d84e883 _PyObject_Call_Prepend + 131
29 org.python.python 0x000000010d8a1e3f slot_tp_init + 175
30 org.python.python 0x000000010d89d534 type_call + 292
31 org.python.python 0x000000010d84d6df _PyObject_FastCallKeywords + 575
32 org.python.python 0x000000010d922b5d call_function + 765
33 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
34 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
35 org.python.python 0x000000010d84d879 _PyFunction_FastCallKeywords + 217
36 org.python.python 0x000000010d922b64 call_function + 772
37 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
38 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
39 org.python.python 0x000000010d84d377 _PyFunction_FastCallDict + 455
40 org.python.python 0x000000010d855cb0 property_descr_get + 160
41 org.python.python 0x000000010d88aecb _PyObject_GenericGetAttrWithDict + 171
42 org.python.python 0x000000010d91db7e _PyEval_EvalFrameDefault + 19358
43 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
44 org.python.python 0x000000010d922b64 call_function + 772
45 org.python.python 0x000000010d91f7a7 _PyEval_EvalFrameDefault + 26567
46 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
47 org.python.python 0x000000010d922b64 call_function + 772
48 org.python.python 0x000000010d91f78a _PyEval_EvalFrameDefault + 26538
49 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
50 org.python.python 0x000000010d84e883 _PyObject_Call_Prepend + 131
51 org.python.python 0x000000010d84d9d8 PyObject_Call + 136
52 QtCore.so 0x000000011d6c9f17 PyQtSlot::call(_object*, _object*) const + 39
53 QtCore.so 0x000000011d6c9e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
54 QtCore.so 0x000000011d6ca925 PyQtSlotProxy::unislot(void**) + 85
55 QtCore.so 0x000000011d6ca89a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
56 QtCore 0x000000011b6732dd QMetaObject::activate(QObject*, int, int, void**) + 1773
57 QtCore 0x000000011b67b392 QTimer::timerEvent(QTimerEvent*) + 98
58 QtCore.so 0x000000011d5c0028 sipQTimer::timerEvent(QTimerEvent*) + 120
59 QtCore 0x000000011b66bc56 QObject::event(QEvent*) + 102
60 QtCore.so 0x000000011d5bfe9b sipQTimer::event(QEvent*) + 187
61 QtWidgets 0x000000011a78b70d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
62 QtWidgets 0x000000011a78cb12 QApplication::notify(QObject*, QEvent*) + 594
63 QtWidgets.so 0x000000011a34b3ca sipQApplication::notify(QObject*, QEvent*) + 234
64 QtCore 0x000000011b6424c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
65 QtCore 0x000000011b69badf QTimerInfoList::activateTimers() + 991
66 libqcocoa.dylib 0x00000001253e3032 0x1253ae000 + 217138
67 com.apple.CoreFoundation 0x00007fff2e30cd52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
68 com.apple.CoreFoundation 0x00007fff2e30ccf1 __CFRunLoopDoSource0 + 103
69 com.apple.CoreFoundation 0x00007fff2e30cb67 __CFRunLoopDoSources0 + 301
70 com.apple.CoreFoundation 0x00007fff2e30b83a __CFRunLoopRun + 927
71 com.apple.CoreFoundation 0x00007fff2e30ae3e CFRunLoopRunSpecific + 462
72 com.apple.HIToolbox 0x00007fff2cf37abd RunCurrentEventLoopInMode + 292
73 com.apple.HIToolbox 0x00007fff2cf377d5 ReceiveNextEventCommon + 584
74 com.apple.HIToolbox 0x00007fff2cf37579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
75 com.apple.AppKit 0x00007fff2b57d039 _DPSNextEvent + 883
76 com.apple.AppKit 0x00007fff2b57b880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
77 com.apple.AppKit 0x00007fff2b56d58e -[NSApplication run] + 658
78 libqcocoa.dylib 0x00000001253e3de3 0x1253ae000 + 220643
79 QtCore 0x000000011b63dadf QEventLoop::exec(QFlags) + 431
80 QtCore 0x000000011b642ad2 QCoreApplication::exec() + 130
81 QtWidgets.so 0x000000011a43a7d2 meth_QApplication_exec_(_object*, _object*) + 82
82 org.python.python 0x000000010d84e392 _PyMethodDef_RawFastCallKeywords + 226
83 org.python.python 0x000000010d84d8b9 _PyCFunction_FastCallKeywords + 41
84 org.python.python 0x000000010d922af0 call_function + 656
85 org.python.python 0x000000010d91f7a7 _PyEval_EvalFrameDefault + 26567
86 org.python.python 0x000000010d84dd61 function_code_fastcall + 177
87 org.python.python 0x000000010d922b64 call_function + 772
88 org.python.python 0x000000010d91f7a7 _PyEval_EvalFrameDefault + 26567
89 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
90 org.python.python 0x000000010d84d879 _PyFunction_FastCallKeywords + 217
91 org.python.python 0x000000010d922b64 call_function + 772
92 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
93 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
94 org.python.python 0x000000010d918f40 PyEval_EvalCode + 48
95 org.python.python 0x000000010d9164d7 builtin_exec + 583
96 org.python.python 0x000000010d84e545 _PyMethodDef_RawFastCallKeywords + 661
97 org.python.python 0x000000010d84d8b9 _PyCFunction_FastCallKeywords + 41
98 org.python.python 0x000000010d922af0 call_function + 656
99 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
100 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
101 org.python.python 0x000000010d84d879 _PyFunction_FastCallKeywords + 217
102 org.python.python 0x000000010d922b64 call_function + 772
103 org.python.python 0x000000010d91f83e _PyEval_EvalFrameDefault + 26718
104 org.python.python 0x000000010d9239bc _PyEval_EvalCodeWithName + 3276
105 org.python.python 0x000000010d84d377 _PyFunction_FastCallDict + 455
106 org.python.python 0x000000010d97da83 pymain_run_module + 147
107 org.python.python 0x000000010d97cb6c pymain_main + 5900
108 org.python.python 0x000000010d97b453 Py_Main + 51
109 edu.ucsf.cgl.ChimeraX 0x000000010d821dc8 main + 120
110 libdyld.dylib 0x00007fff6837ccc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff684bdf02 swtch_pri + 10
1 libsystem_pthread.dylib 0x00007fff6857e698 sched_yield + 11
2 libopenblasp-r0.3.7.dylib 0x000000010f140c05 blas_thread_server + 565
3 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff684bdf02 swtch_pri + 10
1 libsystem_pthread.dylib 0x00007fff6857e698 sched_yield + 11
2 libopenblasp-r0.3.7.dylib 0x000000010f140c05 blas_thread_server + 565
3 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff684c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68581425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010f140c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2e30cef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2e30b9c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2e30ae3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2b71e954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011fed3fdd 0x11dd75000 + 34992093
5 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff684c2766 kevent + 10
1 QtWebEngineCore 0x00000001201e1929 0x11dd75000 + 38193449
2 QtWebEngineCore 0x00000001201dec3d 0x11dd75000 + 38181949
3 QtWebEngineCore 0x000000011ff95c5c 0x11dd75000 + 35785820
4 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
5 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
6 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
7 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff684c2766 kevent + 10
1 QtWebEngineCore 0x00000001201e1929 0x11dd75000 + 38193449
2 QtWebEngineCore 0x00000001201dec3d 0x11dd75000 + 38181949
3 QtWebEngineCore 0x000000011ff95c44 0x11dd75000 + 35785796
4 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
5 QtWebEngineCore 0x000000011ff3e9f4 0x11dd75000 + 35428852
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff38244 0x11dd75000 + 35402308
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff38244 0x11dd75000 + 35402308
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 10:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff38244 0x11dd75000 + 35402308
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 11:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff3833f 0x11dd75000 + 35402559
6 QtWebEngineCore 0x000000011ff38244 0x11dd75000 + 35402308
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 12:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff381b4 0x11dd75000 + 35402164
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 13:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff381b4 0x11dd75000 + 35402164
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 14:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff684c2766 kevent + 10
1 QtWebEngineCore 0x00000001201e1929 0x11dd75000 + 38193449
2 QtWebEngineCore 0x00000001201dec3d 0x11dd75000 + 38181949
3 QtWebEngineCore 0x000000011ff95c44 0x11dd75000 + 35785796
4 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
5 QtWebEngineCore 0x000000011f862fa4 0x11dd75000 + 28237732
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 15:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011ff37c9a 0x11dd75000 + 35400858
5 QtWebEngineCore 0x000000011ff3833f 0x11dd75000 + 35402559
6 QtWebEngineCore 0x000000011ff381e4 0x11dd75000 + 35402212
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 16:: CompositorTileWorker1/58627
0 libsystem_kernel.dylib 0x00007fff684c0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff68581425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011ff8df28 0x11dd75000 + 35753768
3 QtWebEngineCore 0x0000000120f16628 0x11dd75000 + 52041256
4 QtWebEngineCore 0x000000011ff4e614 0x11dd75000 + 35493396
5 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
6 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 17:: AudioThread
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011fed3fdd 0x11dd75000 + 34992093
5 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011fed3fdd 0x11dd75000 + 34992093
5 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 19:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011fed3fd2 0x11dd75000 + 34992082
4 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
5 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
6 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
7 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 20:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff684c2766 kevent + 10
1 QtWebEngineCore 0x00000001201e1929 0x11dd75000 + 38193449
2 QtWebEngineCore 0x00000001201dec3d 0x11dd75000 + 38181949
3 QtWebEngineCore 0x000000011ff95c5c 0x11dd75000 + 35785820
4 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
5 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
6 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
7 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 21:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011ff37c9a 0x11dd75000 + 35400858
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff382a4 0x11dd75000 + 35402404
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff201af 0x11dd75000 + 35303855
4 QtWebEngineCore 0x000000011fed3fdd 0x11dd75000 + 34992093
5 QtWebEngineCore 0x000000011fefd005 0x11dd75000 + 35160069
6 QtWebEngineCore 0x000000011ff4f93c 0x11dd75000 + 35498300
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6857cb68 start_wqthread + 0
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff684bddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff684be170 mach_msg + 60
2 QtWebEngineCore 0x000000011ff202ad 0x11dd75000 + 35304109
3 QtWebEngineCore 0x000000011ff203a1 0x11dd75000 + 35304353
4 QtWebEngineCore 0x000000011ff37ca8 0x11dd75000 + 35400872
5 QtWebEngineCore 0x000000011ff385db 0x11dd75000 + 35403227
6 QtWebEngineCore 0x000000011ff38244 0x11dd75000 + 35402308
7 QtWebEngineCore 0x000000011ff8f697 0x11dd75000 + 35759767
8 libsystem_pthread.dylib 0x00007fff68581109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6857cb8b thread_start + 15
Thread 25:
0 libsystem_pthread.dylib 0x00007fff6857cb68 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff6857cb68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011aebcdc0 rcx: 0x00007fcd78677a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fcd78677a80 rsp: 0x00007fcd78677a58
r8: 0x00007fcd78677f48 r9: 0x5206296df7986d4f r10: 0x000000011aebcdc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x000000013383c710 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff684c433a rfl: 0x0000000000000246 cr2: 0x000000010da88fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x119f82000 - 0x11a02cff7 +libarrays.dylib (0) /Applications/ChimeraX-1.0.app/Contents/lib/python3.7/site-packages/chimerax/arrays/lib/libarrays.dylib
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0x7fff683a7000 - 0x7fff683a7ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff683a8000 - 0x7fff683adff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff683ae000 - 0x7fff683b0ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff683b1000 - 0x7fff683b2ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff683b3000 - 0x7fff683caff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff683cb000 - 0x7fff683cbff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff683cc000 - 0x7fff68453fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff68454000 - 0x7fff68457ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff68458000 - 0x7fff6845bfff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6845c000 - 0x7fff68464fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff68465000 - 0x7fff6846cfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6846d000 - 0x7fff6846effb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6846f000 - 0x7fff684bcff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff684bd000 - 0x7fff684e9ff7 libsystem_kernel.dylib (6153.141.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff684ea000 - 0x7fff68531fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff68532000 - 0x7fff68559fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6855a000 - 0x7fff68567ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff68568000 - 0x7fff68571ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff68572000 - 0x7fff6857afef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6857b000 - 0x7fff68585fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff68586000 - 0x7fff6858aff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6858b000 - 0x7fff6858dfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6858e000 - 0x7fff68595ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff68596000 - 0x7fff685acff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff685ae000 - 0x7fff685b3ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff685b4000 - 0x7fff685e9ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 12
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 143198890
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=935.6M resident=0K(0%) swapped_out_or_unallocated=935.6M(100%)
Writable regions: Total=997.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=997.7M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 1780K 7
CG image 532K 12
CoreAnimation 76K 15
CoreGraphics 8K 1
CoreImage 44K 7
CoreUI image data 1136K 19
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 269.4M 302
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 104K 26
Stack 163.7M 27
Stack Guard 56.0M 1
VM_ALLOCATE 143.2M 260
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 51.2M 530
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 412.6M 135
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 523.0M 495
__UNICODE 564K 1
mapped file 90.4M 39
shared memory 656K 18
=========== ======= =======
TOTAL 2.1G 1929
TOTAL, minus reserved VM space 1.7G 1929
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/ryanslack/Downloads/2EC7ZF1_1A1TA1_RS.pdb
Summary of feedback from opening
/Users/ryanslack/Downloads/2EC7ZF1_1A1TA1_RS.pdb
---
warnings | CONECT record to nonexistent atom: (680, 906)
CONECT record to nonexistent atom: (728, 906)
CONECT record to nonexistent atom: (793, 906)
CONECT record to nonexistent atom: (866, 906)
CONECT record for nonexistent atom: 906
Chain information for 2EC7ZF1_1A1TA1_RS.pdb #1
---
Chain | Description
A | No description available
B | No description available
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 1037.147.4.0.0 (iBridge: 17.16.16610.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H2)
Kernel Version: Darwin 19.6.0
Time since boot: 12 days 11:54
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
C32F391:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: HTQHC00034
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Automatically Adjust Brightness: No
Adapter Firmware Version: ff.c1
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
It's been 4 months since we've had one of these. Maybe fixed by newer versions of Python?