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Opened 4 years ago
Closed 4 years ago
#4839 closed defect (can't reproduce)
Crash in chem_group:: find_group
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Analysis | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000700015425000 (most recent call first):
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 306 in wait
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 558 in wait
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 1252 in run
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x0000700014422000 (most recent call first):
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/selectors.py", line 558 in select
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 1823 in _run_once
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/asyncio/base_events.py", line 570 in run_forever
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/tornado/platform/asyncio.py", line 199 in start
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ipykernel/iostream.py", line 78 in _thread_main
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 870 in run
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x000070001341f000 (most recent call first):
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 302 in wait
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 558 in wait
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/IPython/core/history.py", line 829 in run
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/IPython/core/history.py", line 58 in needs_sqlite
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/decorator.py", line 232 in fun
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Thread 0x0000000107620e00 (most recent call first):
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/chem_group/support.py", line 27 in call_c_plus_plus
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/chem_group/chem_group.py", line 222 in find_group
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/chem_group/chem_group.py", line 228 in select
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/chem_group/chem_group.py", line 235 in
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/atomspec.py", line 904 in find_matches
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/atomspec.py", line 967 in find_matches
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/atomspec.py", line 964 in evaluate
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/atomspec.py", line 1042 in evaluate
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 1272 in parse
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2447 in _parse_arg
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2588 in _process_positional_arguments
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2812 in run
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/run.py", line 36 in run
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 1478 in select_by_mode
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 1681 in
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/private/var/folders/tp/vm5kjvh97px_hrz6gjltg3lc0000gq/T/AppTranslocation/E058EB54-8EF7-4527-9209-617E12B84346/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [7657]
Path: /Volumes/VOLUME/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [7657]
User ID: 503
Date/Time: 2021-06-29 15:33:10.340 -0400
OS Version: macOS 11.4 (20F71)
Report Version: 12
Anonymous UUID: 5487ED78-D63C-46D9-B0CF-941F8DC286B5
Sleep/Wake UUID: 57705BE1-4468-4BAF-BDF3-1A344701696A
Time Awake Since Boot: 56000 seconds
Time Since Wake: 2100 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 30
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0:
-->
__TEXT 106e7b000-106e7c000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Thread 0:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff204a49ee __ulock_wait + 10
1 libsystem_pthread.dylib 0x00007fff204d9f60 _pthread_join + 362
2 libc++.1.dylib 0x00007fff20478846 std::__1::thread::join() + 24
3 _chem_group.cpython-38-darwin.so 0x00000001454a6eca find_group(_object*, _object*) + 1114
4 org.python.python 0x0000000106eaa0c2 cfunction_call_varargs + 290
5 org.python.python 0x0000000106f75aeb _PyEval_EvalFrameDefault + 27339
6 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
7 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
8 org.python.python 0x0000000106f7860c call_function + 444
9 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
10 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
11 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
12 org.python.python 0x0000000106f7860c call_function + 444
13 org.python.python 0x0000000106f75598 _PyEval_EvalFrameDefault + 25976
14 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
15 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
16 org.python.python 0x0000000106f7860c call_function + 444
17 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
18 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
19 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
20 org.python.python 0x0000000106f7860c call_function + 444
21 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
22 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
23 org.python.python 0x0000000106f7860c call_function + 444
24 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
25 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
26 org.python.python 0x0000000106f7860c call_function + 444
27 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
28 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
29 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
30 org.python.python 0x0000000106eaca9a method_vectorcall + 170
31 org.python.python 0x0000000106f7860c call_function + 444
32 org.python.python 0x0000000106f75598 _PyEval_EvalFrameDefault + 25976
33 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
34 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
35 org.python.python 0x0000000106f7860c call_function + 444
36 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
37 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
38 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
39 org.python.python 0x0000000106eaca9a method_vectorcall + 170
40 org.python.python 0x0000000106f7860c call_function + 444
41 org.python.python 0x0000000106f7546e _PyEval_EvalFrameDefault + 25678
42 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
43 org.python.python 0x0000000106f7860c call_function + 444
44 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
45 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
46 org.python.python 0x0000000106f7860c call_function + 444
47 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
48 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
49 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
50 org.python.python 0x0000000106eaca9a method_vectorcall + 170
51 org.python.python 0x0000000106f7860c call_function + 444
52 org.python.python 0x0000000106f75598 _PyEval_EvalFrameDefault + 25976
53 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
54 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
55 org.python.python 0x0000000106f7860c call_function + 444
56 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
57 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
58 org.python.python 0x0000000106eaca9a method_vectorcall + 170
59 org.python.python 0x0000000106f7860c call_function + 444
60 org.python.python 0x0000000106f7546e _PyEval_EvalFrameDefault + 25678
61 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
62 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
63 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
64 QtCore.abi3.so 0x00000001102a699d PyQtSlot::call(_object*, _object*) const + 109
65 QtCore.abi3.so 0x00000001102a6866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
66 QtCore.abi3.so 0x00000001102a7455 PyQtSlotProxy::unislot(void**) + 85
67 QtCore.abi3.so 0x00000001102a73ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
68 QtCore 0x000000011068af6e void doActivate(QObject*, int, void**) + 1118
69 QtWidgets 0x0000000112f7e3c6 QAction::activate(QAction::ActionEvent) + 310
70 QtCore 0x0000000110682b9f QObject::event(QEvent*) + 943
71 QtWidgets.abi3.so 0x0000000112b3c1df sipQAction::event(QEvent*) + 191
72 QtWidgets 0x0000000112f879ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
73 QtWidgets 0x0000000112f88e11 QApplication::notify(QObject*, QEvent*) + 497
74 QtWidgets.abi3.so 0x0000000112b3adb9 sipQApplication::notify(QObject*, QEvent*) + 233
75 QtCore 0x0000000110657a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
76 QtCore 0x0000000110658d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
77 libqcocoa.dylib 0x0000000121352259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
78 libqcocoa.dylib 0x00000001213529c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
79 com.apple.CoreFoundation 0x00007fff205d197c __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
80 com.apple.CoreFoundation 0x00007fff205d18e4 __CFRunLoopDoSource0 + 180
81 com.apple.CoreFoundation 0x00007fff205d1664 __CFRunLoopDoSources0 + 242
82 com.apple.CoreFoundation 0x00007fff205d008c __CFRunLoopRun + 893
83 com.apple.CoreFoundation 0x00007fff205cf64c CFRunLoopRunSpecific + 563
84 com.apple.HIToolbox 0x00007fff2880dab3 RunCurrentEventLoopInMode + 292
85 com.apple.HIToolbox 0x00007fff2880d6e6 ReceiveNextEventCommon + 284
86 com.apple.HIToolbox 0x00007fff2880d5b3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
87 com.apple.AppKit 0x00007fff22dd06f2 _DPSNextEvent + 864
88 com.apple.AppKit 0x00007fff22dceec5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
89 com.apple.AppKit 0x00007fff22dc1239 -[NSApplication run] + 586
90 libqcocoa.dylib 0x000000012135162f QCocoaEventDispatcher::processEvents(QFlags) + 2495
91 QtCore 0x0000000110653acf QEventLoop::exec(QFlags) + 431
92 QtCore 0x0000000110658042 QCoreApplication::exec() + 130
93 QtWidgets.abi3.so 0x0000000112c2c702 meth_QApplication_exec_(_object*, _object*) + 82
94 org.python.python 0x0000000106eaa0c2 cfunction_call_varargs + 290
95 org.python.python 0x0000000106ea9a85 _PyObject_MakeTpCall + 373
96 org.python.python 0x0000000106f78665 call_function + 533
97 org.python.python 0x0000000106f7546e _PyEval_EvalFrameDefault + 25678
98 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
99 org.python.python 0x0000000106eaca9a method_vectorcall + 170
100 org.python.python 0x0000000106f7860c call_function + 444
101 org.python.python 0x0000000106f7546e _PyEval_EvalFrameDefault + 25678
102 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
103 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
104 org.python.python 0x0000000106f7860c call_function + 444
105 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
106 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
107 org.python.python 0x0000000106f6ef44 PyEval_EvalCode + 100
108 org.python.python 0x0000000106f6c332 builtin_exec + 626
109 org.python.python 0x0000000106ee65ff cfunction_vectorcall_FASTCALL + 175
110 org.python.python 0x0000000106f7860c call_function + 444
111 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
112 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
113 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
114 org.python.python 0x0000000106f7860c call_function + 444
115 org.python.python 0x0000000106f75505 _PyEval_EvalFrameDefault + 25829
116 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
117 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
118 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
119 org.python.python 0x0000000106fdbeb3 pymain_run_module + 195
120 org.python.python 0x0000000106fdb585 Py_RunMain + 1413
121 org.python.python 0x0000000106fdbbdf pymain_main + 223
122 org.python.python 0x0000000106fdbaeb Py_Main + 43
123 edu.ucsf.cgl.ChimeraX 0x0000000106e7bdc8 main + 120
124 libdyld.dylib 0x00007fff204f3f5d start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff204ac1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116b46e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116b46cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116adaa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116ae4778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116ae5150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116ae4c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff204ac1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116b46e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116b46cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011aa13f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 5:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff204a5cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204d8e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000116b33e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x0000000117deb5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116a6420f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff204ac1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000116b46e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000116b46cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 8:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116a6420f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ae476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000116ae5150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000116ae4d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 12:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116ae476a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000116ae4e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000116ae4c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff205d1b5f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff205d023f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff205cf64c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f5668a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 16:
0 libsystem_kernel.dylib 0x00007fff204a5cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204d8e49 _pthread_cond_wait + 1298
2 org.python.python 0x0000000106fcba36 PyThread_acquire_lock_timed + 454
3 org.python.python 0x0000000107018c4f acquire_timed + 111
4 org.python.python 0x0000000107018d60 lock_PyThread_acquire_lock + 48
5 org.python.python 0x0000000106eb2ef5 method_vectorcall_VARARGS_KEYWORDS + 373
6 org.python.python 0x0000000106f7860c call_function + 444
7 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
8 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
9 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
10 org.python.python 0x0000000106f7860c call_function + 444
11 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
13 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
14 org.python.python 0x0000000106f7860c call_function + 444
15 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
16 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
17 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
18 org.python.python 0x0000000106f75978 _PyEval_EvalFrameDefault + 26968
19 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
20 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
21 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
22 org.python.python 0x0000000106f75978 _PyEval_EvalFrameDefault + 26968
23 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
24 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
25 org.python.python 0x0000000106f7860c call_function + 444
26 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
27 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
28 org.python.python 0x0000000106f7860c call_function + 444
29 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
30 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
31 org.python.python 0x0000000106eacadb method_vectorcall + 235
32 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
33 org.python.python 0x000000010701864a t_bootstrap + 74
34 org.python.python 0x0000000106fcb619 pythread_wrapper + 25
35 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
36 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 17:: ZMQbg/Reaper
0 libsystem_kernel.dylib 0x00007fff204a7c4a kevent + 10
1 libzmq.5.dylib 0x000000015731ab45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000015734913d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 18:: ZMQbg/IO/0
0 libsystem_kernel.dylib 0x00007fff204a7c4a kevent + 10
1 libzmq.5.dylib 0x000000015731ab45 zmq::kqueue_t::loop() + 181
2 libzmq.5.dylib 0x000000015734913d thread_routine(void*) + 61
3 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff204a7c4a kevent + 10
1 select.cpython-38-darwin.so 0x00000001073991d1 select_kqueue_control + 1057
2 org.python.python 0x0000000106eb306e method_vectorcall_FASTCALL + 254
3 org.python.python 0x0000000106f7860c call_function + 444
4 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
5 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
6 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
7 org.python.python 0x0000000106f7860c call_function + 444
8 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
9 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
10 org.python.python 0x0000000106f7860c call_function + 444
11 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
13 org.python.python 0x0000000106f7860c call_function + 444
14 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
15 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
16 org.python.python 0x0000000106f7860c call_function + 444
17 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
18 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
19 org.python.python 0x0000000106eacadb method_vectorcall + 235
20 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
21 org.python.python 0x0000000106f75978 _PyEval_EvalFrameDefault + 26968
22 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
23 org.python.python 0x0000000106f7860c call_function + 444
24 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
25 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
26 org.python.python 0x0000000106f7860c call_function + 444
27 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
28 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
29 org.python.python 0x0000000106eacadb method_vectorcall + 235
30 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
31 org.python.python 0x000000010701864a t_bootstrap + 74
32 org.python.python 0x0000000106fcb619 pythread_wrapper + 25
33 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
34 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff204a5cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204d8e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000015a3f72eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff204a5cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204d8e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x00000001080eb27b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 22:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116b3c2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000116a641db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000116acf62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000116a937cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000116aeea7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116ae4778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116ae5150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116ae4cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff204a32ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff204a362c mach_msg + 60
2 QtWebEngineCore 0x0000000116b3c492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000116ae4778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000116ae5150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000116ae4cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000116b37e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 25:
0 libsystem_pthread.dylib 0x00007fff204d4420 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff204d4420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff204d4420 start_wqthread + 0
Thread 28:
0 libsystem_kernel.dylib 0x00007fff204a5cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204d8e49 _pthread_cond_wait + 1298
2 org.python.python 0x0000000106fcbb2c PyThread_acquire_lock_timed + 700
3 org.python.python 0x0000000107018c4f acquire_timed + 111
4 org.python.python 0x0000000107018d60 lock_PyThread_acquire_lock + 48
5 org.python.python 0x0000000106eb2ef5 method_vectorcall_VARARGS_KEYWORDS + 373
6 org.python.python 0x0000000106f7860c call_function + 444
7 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
8 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
9 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
10 org.python.python 0x0000000106f7860c call_function + 444
11 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x0000000106f79454 _PyEval_EvalCodeWithName + 2804
13 org.python.python 0x0000000106eaa56e _PyFunction_Vectorcall + 270
14 org.python.python 0x0000000106f7860c call_function + 444
15 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
16 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
17 org.python.python 0x0000000106f7860c call_function + 444
18 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
19 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
20 org.python.python 0x0000000106f7860c call_function + 444
21 org.python.python 0x0000000106f7544a _PyEval_EvalFrameDefault + 25642
22 org.python.python 0x0000000106eaa3d0 function_code_fastcall + 128
23 org.python.python 0x0000000106eacadb method_vectorcall + 235
24 org.python.python 0x0000000106ea9dad PyVectorcall_Call + 109
25 org.python.python 0x000000010701864a t_bootstrap + 74
26 org.python.python 0x0000000106fcb619 pythread_wrapper + 25
27 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
28 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 29:
0 libsystem_pthread.dylib 0x00007fff204d4420 start_wqthread + 0
Thread 30 Crashed:
0 libsystem_kernel.dylib 0x00007fff204a992e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204d85bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff203bcbe5 raise + 26
3 libsystem_platform.dylib 0x00007fff2051dd7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libatomstruct.dylib 0x0000000122ff3e52 std::__1::__tree_iterator*, long> std::__1::__tree, std::__1::allocator >::__emplace_hint_unique_key_args(std::__1::__tree_const_iterator*, long>, atomstruct::Ring const&, atomstruct::Ring const&) + 130
6 libatomstruct.dylib 0x0000000122ff150a atomstruct::Structure::_per_residue_rings(unsigned int, std::__1::set, std::__1::allocator >*, std::__1::set, std::__1::allocator >*) const + 15738
7 libatomstruct.dylib 0x00000001230175a9 atomstruct::Structure::rings(bool, unsigned int, std::__1::set, std::__1::allocator >*) const + 137
8 libatomstruct.dylib 0x0000000122f91df5 atomstruct::Atom::rings(bool, int, std::__1::set, std::__1::allocator >*) const + 21
9 _chem_group.cpython-38-darwin.so 0x00000001454ae022 RingAtomCondition::atom_matches(atomstruct::Atom const*) const + 50
10 _chem_group.cpython-38-darwin.so 0x00000001454a3ce5 CG_Condition::trace_group(atomstruct::Atom const*, atomstruct::Atom const*) + 69
11 _chem_group.cpython-38-darwin.so 0x00000001454a9e30 initiate_find_group(CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*) + 96
12 _chem_group.cpython-38-darwin.so 0x00000001454ae41f void* std::__1::__thread_proxy >, void (*)(CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*), CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*> >(void*) + 63
13 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
14 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 31:
0 libatomstruct.dylib 0x00000001230177a0 atomstruct::Structure::rings(bool, unsigned int, std::__1::set, std::__1::allocator >*) const + 640
1 libatomstruct.dylib 0x0000000122f91df5 atomstruct::Atom::rings(bool, int, std::__1::set, std::__1::allocator >*) const + 21
2 _chem_group.cpython-38-darwin.so 0x00000001454ae022 RingAtomCondition::atom_matches(atomstruct::Atom const*) const + 50
3 _chem_group.cpython-38-darwin.so 0x00000001454a3ce5 CG_Condition::trace_group(atomstruct::Atom const*, atomstruct::Atom const*) + 69
4 _chem_group.cpython-38-darwin.so 0x00000001454a9e30 initiate_find_group(CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*) + 96
5 _chem_group.cpython-38-darwin.so 0x00000001454ae41f void* std::__1::__thread_proxy >, void (*)(CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*), CG_Condition*, std::__1::vector >*, std::__1::__wrap_iter, std::__1::__wrap_iter, std::__1::vector >, std::__1::allocator > > >*, std::__1::mutex*> >(void*) + 63
6 libsystem_pthread.dylib 0x00007fff204d88fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff204d4443 thread_start + 15
Thread 30 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000700009ae3000 rcx: 0x0000700009ae2438 rdx: 0x0000000000000000
rdi: 0x0000000000026f5f rsi: 0x000000000000000b rbp: 0x0000700009ae2460 rsp: 0x0000700009ae2438
r8: 0x0000700009ae2928 r9: 0x529886f61f3c51c9 r10: 0x0000700009ae3000 r11: 0x0000000000000246
r12: 0x0000000000026f5f r13: 0x00006000050de2a0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff204a992e rfl: 0x0000000000000246 cr2: 0x00000001070c07e0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 30 instruction stream:
42 10 48 8b 41 10 31 f6-48 39 08 40 0f 95 c6 48 B.H.A.1.H9.@...H
89 14 f0 48 89 0a 48 89-51 10 48 8b 42 10 eb 75 ...H..H.Q.H.B..u
48 8b 56 08 48 89 11 48-85 d2 74 08 48 89 4a 10 H.V.H..H..t.H.J.
48 8b 41 10 48 89 46 10-48 8b 41 10 31 d2 48 39 H.A.H.F.H.A.1.H9
08 0f 95 c2 48 89 34 d0-48 89 4e 08 48 89 71 10 ....H.4.H.N.H.q.
48 8b 46 10 c6 46 18 01-c6 40 18 00 48 8b 48 08 H.F..F...@..H.H.
[48]8b 11 48 89 50 08 48-85 d2 74 04 48 89 42 10 H..H.P.H..t.H.B. /var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x106e89000 - 0x1070bffff +org.python.python (3.8.8, [c] 2001-2019 Python Software Foundation. - 3.8.8) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/Python
0x10721a000 - 0x10721cfff +_heapq.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_heapq.cpython-38-darwin.so
0x107224000 - 0x107229fff +zlib.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/zlib.cpython-38-darwin.so
0x107233000 - 0x107235fff +_bz2.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bz2.cpython-38-darwin.so
0x10723e000 - 0x10726ffff +_lzma.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_lzma.cpython-38-darwin.so
0x10727e000 - 0x10727ffff +grp.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/grp.cpython-38-darwin.so
0x107287000 - 0x10728ffff +math.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/math.cpython-38-darwin.so
0x10729b000 - 0x10729cfff +_bisect.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bisect.cpython-38-darwin.so
0x1072a4000 - 0x1072a8fff +_sha512.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha512.cpython-38-darwin.so
0x1072b1000 - 0x1072b2fff +_random.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_random.cpython-38-darwin.so
0x1072bb000 - 0x1072c0fff +_json.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_json.cpython-38-darwin.so
0x1072ca000 - 0x1072defff +_ssl.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ssl.cpython-38-darwin.so
0x1072f7000 - 0x10734ffff +libssl.1.1.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libssl.1.1.dylib
0x10737e000 - 0x10738bfff +_socket.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_socket.cpython-38-darwin.so
0x107398000 - 0x10739bfff +select.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
0x1073a5000 - 0x1073aafff +_struct.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_struct.cpython-38-darwin.so
0x1073b7000 - 0x1073bbfff +binascii.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/binascii.cpython-38-darwin.so
0x1073c4000 - 0x1073c7fff +_hashlib.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_hashlib.cpython-38-darwin.so
0x1073d1000 - 0x1073d7fff +_blake2.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_blake2.cpython-38-darwin.so
0x1073e1000 - 0x1073f1fff +_sha3.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha3.cpython-38-darwin.so
0x1073fb000 - 0x10740afff +_datetime.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_datetime.cpython-38-darwin.so
0x10741b000 - 0x10741bfff +_scproxy.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_scproxy.cpython-38-darwin.so
0x107423000 - 0x10746cfff +_decimal.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_decimal.cpython-38-darwin.so
0x10748b000 - 0x1074b4fff +pyexpat.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/pyexpat.cpython-38-darwin.so
0x1074cd000 - 0x1074cefff +_queue.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_queue.cpython-38-darwin.so
0x1074d7000 - 0x1074edfff +_pickle.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_pickle.cpython-38-darwin.so
0x1074fd000 - 0x107501fff +_csv.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_csv.cpython-38-darwin.so
0x10750b000 - 0x10750cfff +_posixsubprocess.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_posixsubprocess.cpython-38-darwin.so
0x107514000 - 0x107529fff +libgcc_s.1.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x107539000 - 0x10753afff +lapack_lite.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/linalg/lapack_lite.cpython-38-darwin.so
0x107542000 - 0x107542fff +_arrays.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/arrays/_arrays.cpython-38-darwin.so
0x107549000 - 0x1075e4fff dyld (852) /usr/lib/dyld
0x107661000 - 0x107877fff +libcrypto.1.1.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libcrypto.1.1.dylib
0x107915000 - 0x107c8afff +_multiarray_umath.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-darwin.so
0x107db2000 - 0x10b809fff +libopenblas.0.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libopenblas.0.dylib
0x10bafe000 - 0x10bc15fff +libgfortran.3.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10bc83000 - 0x10bcb9fff +libquadmath.0.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10dccd000 - 0x10dcdafff +_multiarray_tests.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/_multiarray_tests.cpython-38-darwin.so
0x10dcf0000 - 0x10dd01fff +_ctypes.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ctypes.cpython-38-darwin.so
0x10dd18000 - 0x10dd31fff +_umath_linalg.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/linalg/_umath_linalg.cpython-38-darwin.so
0x10dd45000 - 0x10dd56fff +_pocketfft_internal.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/fft/_pocketfft_internal.cpython-38-darwin.so
0x10dd5f000 - 0x10ddcafff +mtrand.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/mtrand.cpython-38-darwin.so
0x10de25000 - 0x10de43fff +bit_generator.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/bit_generator.cpython-38-darwin.so
0x10de64000 - 0x10de96fff +_common.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_common.cpython-38-darwin.so
0x10deb3000 - 0x10df02fff +_bounded_integers.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_bounded_integers.cpython-38-darwin.so
0x10df29000 - 0x10df37fff +_mt19937.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_mt19937.cpython-38-darwin.so
0x10df48000 - 0x10df54fff +_philox.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_philox.cpython-38-darwin.so
0x10df64000 - 0x10df6dfff +_pcg64.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_pcg64.cpython-38-darwin.so
0x10df7c000 - 0x10df83fff +_sfc64.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_sfc64.cpython-38-darwin.so
0x10df90000 - 0x10e011fff +_generator.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/random/_generator.cpython-38-darwin.so
0x110071000 - 0x110112fff +libarrays.dylib (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/arrays/lib/libarrays.dylib
0x110136000 - 0x110154fff +_geometry.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/geometry/_geometry.cpython-38-darwin.so
0x110169000 - 0x110169fff +_opcode.cpython-38-darwin.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_opcode.cpython-38-darwin.so
0x110171000 - 0x1102d0fff +QtCore.abi3.so (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/QtCore.abi3.so
0x11045f000 - 0x1109cffff +QtCore (0) /var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt5/Qt/lib/QtCore.framework/Versions/5/QtCore
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0x7fff65c56000 - 0x7fff66169fff com.apple.driver.AppleIntelHD5000GraphicsGLDriver (16.4.5 - 16.0.4) /System/Library/Extensions/AppleIntelHD5000GraphicsGLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsGLDriver
0x7fff6969a000 - 0x7fff6969efff libmetal_timestamp.dylib (31001.189) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bae5000 - 0x7fff6baebfff libCoreFSCache.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6baec000 - 0x7fff6baf0fff libCoreVMClient.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6baf1000 - 0x7fff6bb00fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bb01000 - 0x7fff6bb03fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bb04000 - 0x7fff6bb0cfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bb0d000 - 0x7fff6bb40fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bb41000 - 0x7fff6bb7dfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bb7e000 - 0x7fff6bd11fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bd12000 - 0x7fff6bd1cfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bd1d000 - 0x7fff6be9afff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6be9b000 - 0x7fff6bec3fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d15c000 - 0x7fff6d1b4fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e25e000 - 0x7fff6e265fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e266000 - 0x7fff6e34dfff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f8cb000 - 0x7fff6f8ddfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73bab000 - 0x7fff73bb6fff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73dcc000 - 0x7fff73de4fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7795a000 - 0x7fff77961fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=5.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 1536K 12
Activity Tracing 256K 1
CG backing stores 3336K 18
CG image 3960K 69
CG raster data 3520K 8
CoreAnimation 10.3M 154
CoreGraphics 20K 4
CoreImage 8K 2
CoreServices 624K 2
CoreUI image data 1888K 30
Foundation 32K 2
Kernel Alloc Once 404K 4
MALLOC 4.7G 3876
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 768K 3 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 32K 5
OpenGL GLSL 384K 5
STACK GUARD 56.1M 32
Stack 197.8M 34
VM_ALLOCATE 314.3M 440
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 33.6M 710
__DATA_CONST 23.5M 283
__DATA_DIRTY 1294K 185
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 604.4M 225
__OBJC_RO 70.2M 1
__OBJC_RW 2480K 2
__TEXT 654.5M 666
__UNICODE 588K 1
mapped file 740.8M 103
shared memory 3000K 27
=========== ======= =======
TOTAL 7.5G 6916
TOTAL, minus reserved VM space 7.4G 6916
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.4.5
OpenGL renderer: Intel HD Graphics 5000 OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir6,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 1.3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 4 GB
System Firmware Version: 431.0.0.0.0
SMC Version (system): 2.13f15
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 4 days 3:36
Graphics/Displays:
Intel HD Graphics 5000:
Chipset Model: Intel HD Graphics 5000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a26
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Thunderbolt Display:
Display Type: LCD
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: C02LK1BDF2GC
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Structure Analysis |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in chem_group:: find_group |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Would need the structure in order to investigate further.