![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#4820 closed defect (can't reproduce)
Crash in AtomSearchTree implementation
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Analysis | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-20.5.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [28046]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [28046]
User ID: 501
Date/Time: 2021-06-25 01:49:49.256 +0900
OS Version: macOS 11.4 (20F71)
Report Version: 12
Bridge OS Version: 5.4 (18P4663)
Anonymous UUID: 5CB966F7-5C7F-C1AB-39C1-2AE03178595A
Sleep/Wake UUID: 02DE8B3D-E385-49F3-8E60-30B494C35BD3
Time Awake Since Boot: 160000 seconds
Time Since Wake: 11000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0:
-->
__TEXT 103b6f000-103b70000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2039892e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203c75bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff202abbe5 raise + 26
3 libsystem_platform.dylib 0x00007fff2040cd7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libatomsearch.dylib 0x0000000153d17e34 _Node::_Node(std::__1::vector > const&, bool, double) + 116
6 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
7 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
8 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
9 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
10 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
11 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
12 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
13 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
14 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
15 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
16 libatomsearch.dylib 0x0000000153d18967 _Node::_Node(std::__1::vector > const&, bool, double) + 2983
17 libatomsearch.dylib 0x0000000153d188cf _Node::_Node(std::__1::vector > const&, bool, double) + 2831
18 libatomsearch.dylib 0x0000000153d17137 AtomSearchTree::AtomSearchTree(std::__1::vector > const&, bool, double) + 455
19 ast.cpython-37m-darwin.so 0x0000000153d52c6e __pyx_tp_new_8chimerax_11atom_search_3ast_CyAtomSearchTree(_typeobject*, _object*, _object*) + 2910
20 org.python.python 0x0000000103bed43c type_call + 44
21 org.python.python 0x0000000103b9d6df _PyObject_FastCallKeywords + 575
22 org.python.python 0x0000000103c72bcd call_function + 765
23 org.python.python 0x0000000103c695c4 _PyEval_EvalFrameDefault + 1396
24 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
25 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
26 org.python.python 0x0000000103c72bd4 call_function + 772
27 org.python.python 0x0000000103c695c4 _PyEval_EvalFrameDefault + 1396
28 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
29 org.python.python 0x0000000103b9d377 _PyFunction_FastCallDict + 455
30 org.python.python 0x0000000103c6fa3a _PyEval_EvalFrameDefault + 27114
31 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
32 org.python.python 0x0000000103b9d377 _PyFunction_FastCallDict + 455
33 org.python.python 0x0000000103c6fa3a _PyEval_EvalFrameDefault + 27114
34 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
35 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
36 org.python.python 0x0000000103c72bd4 call_function + 772
37 org.python.python 0x0000000103c695c4 _PyEval_EvalFrameDefault + 1396
38 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
39 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
40 org.python.python 0x0000000103c72bd4 call_function + 772
41 org.python.python 0x0000000103c6f8ae _PyEval_EvalFrameDefault + 26718
42 org.python.python 0x0000000103b9dd61 function_code_fastcall + 177
43 org.python.python 0x0000000103b9e873 _PyObject_Call_Prepend + 131
44 org.python.python 0x0000000103b9d9d8 PyObject_Call + 136
45 QtCore.so 0x0000000117ce4f17 PyQtSlot::call(_object*, _object*) const + 39
46 QtCore.so 0x0000000117ce4e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
47 QtCore.so 0x0000000117ce5925 PyQtSlotProxy::unislot(void**) + 85
48 QtCore.so 0x0000000117ce589a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
49 QtCore 0x000000011591613d QMetaObject::activate(QObject*, int, int, void**) + 1773
50 QtWidgets 0x0000000114d8d68c 0x114be9000 + 1721996
51 QtCore 0x000000011591668c QMetaObject::activate(QObject*, int, int, void**) + 3132
52 QtWidgets 0x0000000114ce3e2f 0x114be9000 + 1027631
53 QtWidgets 0x0000000114ce3ccc 0x114be9000 + 1027276
54 QtWidgets 0x0000000114ce4dff QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
55 QtWidgets 0x0000000114c353bd QWidget::event(QEvent*) + 445
56 QtWidgets 0x0000000114bf967d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
57 QtWidgets 0x0000000114bfc4d8 QApplication::notify(QObject*, QEvent*) + 7336
58 QtWidgets.so 0x00000001147b93ca sipQApplication::notify(QObject*, QEvent*) + 234
59 QtCore 0x00000001158e5324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
60 QtWidgets 0x0000000114bf9fa0 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
61 QtWidgets 0x0000000114c5490e 0x114be9000 + 440590
62 QtWidgets 0x0000000114c535c9 0x114be9000 + 435657
63 QtWidgets 0x0000000114bf967d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
64 QtWidgets 0x0000000114bfaa82 QApplication::notify(QObject*, QEvent*) + 594
65 QtWidgets.so 0x00000001147b93ca sipQApplication::notify(QObject*, QEvent*) + 234
66 QtCore 0x00000001158e5324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
67 QtGui 0x00000001151ce779 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961
68 QtGui 0x00000001151b546b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
69 libqcocoa.dylib 0x000000011fa40900 0x11fa0a000 + 223488
70 libqcocoa.dylib 0x000000011fa41068 0x11fa0a000 + 225384
71 com.apple.CoreFoundation 0x00007fff204c097c __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
72 com.apple.CoreFoundation 0x00007fff204c08e4 __CFRunLoopDoSource0 + 180
73 com.apple.CoreFoundation 0x00007fff204c0664 __CFRunLoopDoSources0 + 242
74 com.apple.CoreFoundation 0x00007fff204bf08c __CFRunLoopRun + 893
75 com.apple.CoreFoundation 0x00007fff204be64c CFRunLoopRunSpecific + 563
76 com.apple.HIToolbox 0x00007fff286fcab3 RunCurrentEventLoopInMode + 292
77 com.apple.HIToolbox 0x00007fff286fc6e6 ReceiveNextEventCommon + 284
78 com.apple.HIToolbox 0x00007fff286fc5b3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
79 com.apple.AppKit 0x00007fff22cbf6f2 _DPSNextEvent + 864
80 com.apple.AppKit 0x00007fff22cbdec5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
81 com.apple.AppKit 0x00007fff22cb0239 -[NSApplication run] + 586
82 libqcocoa.dylib 0x000000011fa3fde3 0x11fa0a000 + 220643
83 QtCore 0x00000001158e093f QEventLoop::exec(QFlags) + 431
84 QtCore 0x00000001158e5932 QCoreApplication::exec() + 130
85 QtWidgets.so 0x00000001148a87d2 meth_QApplication_exec_(_object*, _object*) + 82
86 org.python.python 0x0000000103b9e382 _PyMethodDef_RawFastCallKeywords + 226
87 org.python.python 0x0000000103b9d8b9 _PyCFunction_FastCallKeywords + 41
88 org.python.python 0x0000000103c72b60 call_function + 656
89 org.python.python 0x0000000103c6f817 _PyEval_EvalFrameDefault + 26567
90 org.python.python 0x0000000103b9dd61 function_code_fastcall + 177
91 org.python.python 0x0000000103c72bd4 call_function + 772
92 org.python.python 0x0000000103c6f817 _PyEval_EvalFrameDefault + 26567
93 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
94 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
95 org.python.python 0x0000000103c72bd4 call_function + 772
96 org.python.python 0x0000000103c6f8ae _PyEval_EvalFrameDefault + 26718
97 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
98 org.python.python 0x0000000103c68fb0 PyEval_EvalCode + 48
99 org.python.python 0x0000000103c66547 builtin_exec + 583
100 org.python.python 0x0000000103b9e52d _PyMethodDef_RawFastCallKeywords + 653
101 org.python.python 0x0000000103b9d8b9 _PyCFunction_FastCallKeywords + 41
102 org.python.python 0x0000000103c72b60 call_function + 656
103 org.python.python 0x0000000103c6f8ae _PyEval_EvalFrameDefault + 26718
104 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
105 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
106 org.python.python 0x0000000103c72bd4 call_function + 772
107 org.python.python 0x0000000103c6f8ae _PyEval_EvalFrameDefault + 26718
108 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
109 org.python.python 0x0000000103b9d377 _PyFunction_FastCallDict + 455
110 org.python.python 0x0000000103ccdaf3 pymain_run_module + 147
111 org.python.python 0x0000000103cccbdc pymain_main + 5900
112 org.python.python 0x0000000103ccb4c3 Py_Main + 51
113 edu.ucsf.cgl.ChimeraX 0x0000000103b6fdc8 main + 120
114 libdyld.dylib 0x00007fff203e2f5d start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff204c0b5f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff204bf23f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204be64c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e4568a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a56605d 0x118410000 + 34955357
5 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff20396c4a kevent + 10
1 QtWebEngineCore 0x000000011a8739a9 0x118410000 + 38156713
2 QtWebEngineCore 0x000000011a870cbd 0x118410000 + 38145213
3 QtWebEngineCore 0x000000011a627cdc 0x118410000 + 35749084
4 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
5 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
6 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff20396c4a kevent + 10
1 QtWebEngineCore 0x000000011a8739a9 0x118410000 + 38156713
2 QtWebEngineCore 0x000000011a870cbd 0x118410000 + 38145213
3 QtWebEngineCore 0x000000011a627cc4 0x118410000 + 35749060
4 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
5 QtWebEngineCore 0x000000011a5d0a74 0x118410000 + 35392116
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 5:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b2421 0x118410000 + 35267617
4 QtWebEngineCore 0x000000011a5c9d28 0x118410000 + 35364136
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca2c4 0x118410000 + 35365572
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 6:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b2421 0x118410000 + 35267617
4 QtWebEngineCore 0x000000011a5c9d28 0x118410000 + 35364136
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca2c4 0x118410000 + 35365572
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 7:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b2421 0x118410000 + 35267617
4 QtWebEngineCore 0x000000011a5c9d28 0x118410000 + 35364136
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca234 0x118410000 + 35365428
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 8:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b2421 0x118410000 + 35267617
4 QtWebEngineCore 0x000000011a5c9d28 0x118410000 + 35364136
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca234 0x118410000 + 35365428
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff20396c4a kevent + 10
1 QtWebEngineCore 0x000000011a8739a9 0x118410000 + 38156713
2 QtWebEngineCore 0x000000011a870cbd 0x118410000 + 38145213
3 QtWebEngineCore 0x000000011a627cc4 0x118410000 + 35749060
4 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
5 QtWebEngineCore 0x0000000119efdfe4 0x118410000 + 28237796
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 10:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a5c9d1a 0x118410000 + 35364122
5 QtWebEngineCore 0x000000011a5ca3bf 0x118410000 + 35365823
6 QtWebEngineCore 0x000000011a5ca264 0x118410000 + 35365476
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 11:: CompositorTileWorker1/72195
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011a61ffa8 0x118410000 + 35717032
3 QtWebEngineCore 0x000000011b5a64c8 0x118410000 + 51995848
4 QtWebEngineCore 0x000000011a5e0694 0x118410000 + 35456660
5 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
6 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 12:: AudioThread
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a56605d 0x118410000 + 34955357
5 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a56605d 0x118410000 + 34955357
5 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a566052 0x118410000 + 34955346
4 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
5 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
6 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff20396c4a kevent + 10
1 QtWebEngineCore 0x000000011a8739a9 0x118410000 + 38156713
2 QtWebEngineCore 0x000000011a870cbd 0x118410000 + 38145213
3 QtWebEngineCore 0x000000011a627cdc 0x118410000 + 35749084
4 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
5 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
6 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 16:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a5c9d1a 0x118410000 + 35364122
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca324 0x118410000 + 35365668
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b222f 0x118410000 + 35267119
4 QtWebEngineCore 0x000000011a56605d 0x118410000 + 34955357
5 QtWebEngineCore 0x000000011a58f085 0x118410000 + 35123333
6 QtWebEngineCore 0x000000011a5e19bc 0x118410000 + 35461564
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 18:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x00000001055b5c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 19:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x00000001055b5c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x00000001055b5c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x00000001055b5c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x00000001055b5c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 23:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203922ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039262c mach_msg + 60
2 QtWebEngineCore 0x000000011a5b232d 0x118410000 + 35267373
3 QtWebEngineCore 0x000000011a5b2421 0x118410000 + 35267617
4 QtWebEngineCore 0x000000011a5c9d28 0x118410000 + 35364136
5 QtWebEngineCore 0x000000011a5ca65b 0x118410000 + 35366491
6 QtWebEngineCore 0x000000011a5ca2c4 0x118410000 + 35365572
7 QtWebEngineCore 0x000000011a621717 0x118410000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000016a2f3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 25:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000016a2f3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 26:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000016a2f3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 27:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000016a2f3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 28:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000016a2f3c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 29:
0 libsystem_pthread.dylib 0x00007fff203c3420 start_wqthread + 0
Thread 30:
0 libsystem_kernel.dylib 0x00007fff20394cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c7e49 _pthread_cond_wait + 1298
2 org.python.python 0x0000000103cb70af PyThread_acquire_lock_timed + 351
3 org.python.python 0x0000000103d029df acquire_timed + 111
4 org.python.python 0x0000000103d0275c lock_PyThread_acquire_lock + 44
5 org.python.python 0x0000000103b9e56a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x0000000103ba4571 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000103c72bfe call_function + 814
8 org.python.python 0x0000000103c6f7fa _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000103c72bd4 call_function + 772
12 org.python.python 0x0000000103c6f7fa _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000103c73a2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000103b9d879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000103c72bd4 call_function + 772
16 org.python.python 0x0000000103c6f7fa _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000103b9dd61 function_code_fastcall + 177
18 org.python.python 0x0000000103c72bd4 call_function + 772
19 org.python.python 0x0000000103c6f7fa _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000103b9dd61 function_code_fastcall + 177
21 org.python.python 0x0000000103c72bd4 call_function + 772
22 org.python.python 0x0000000103c6f7fa _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000103b9dd61 function_code_fastcall + 177
24 org.python.python 0x0000000103b9e873 _PyObject_Call_Prepend + 131
25 org.python.python 0x0000000103b9d9d8 PyObject_Call + 136
26 org.python.python 0x0000000103d03287 t_bootstrap + 71
27 org.python.python 0x0000000103cb6d19 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff203c78fc _pthread_start + 224
29 libsystem_pthread.dylib 0x00007fff203c3443 thread_start + 15
Thread 31:
0 libsystem_pthread.dylib 0x00007fff203c3420 start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00007fff203c3420 start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00007fff203c3420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001046dce00 rcx: 0x00007f8fa5d77a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f8fa5d77a80 rsp: 0x00007f8fa5d77a58
r8: 0x00007f8fa5d77f48 r9: 0x6a7e1e24bc0b60dd r10: 0x00000001046dce00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2039892e rfl: 0x0000000000000246 cr2: 0x0000000103dd8fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
f3 0f 7e 06 66 0f 2e 03-49 89 d9 77 03 49 89 f1 ..~.f...I..w.I..
48 83 c3 08 4c 89 ce 49-39 d8 75 e4 4c 89 f8 48 H...L..I9.u.L..H
c1 e0 04 49 8b 11 49 89-54 04 10 4d 39 c2 74 64 ...I..I.T..M9.td
48 89 fe 48 8d 5d 88 66-0f 1f 84 00 00 00 00 00 H..H.].f........
f3 41 0f 7e 02 66 0f 2e-06 4c 89 d2 77 03 48 89 .A.~.f...L..w.H.
f2 49 83 c2 08 48 89 d6-4d 39 d0 75 e3 eb 3c 90 .I...H..M9.u.. /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
0x103b7a000 - 0x103d75fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python
0x1040fa000 - 0x1040fbfff +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so
0x1041c4000 - 0x1041c7fff +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so
0x1041d1000 - 0x1041e5fff +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libz.1.2.11.dylib
0x10422f000 - 0x104230fff +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so
0x104239000 - 0x10423cfff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so
0x104247000 - 0x104247fff +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so
0x10428f000 - 0x104294fff +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so
0x1042a0000 - 0x1042a2fff +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so
0x1042ac000 - 0x104309fff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libssl.1.1.dylib
0x104338000 - 0x1044fffff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libcrypto.1.1.dylib
0x104598000 - 0x10459dfff +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so
0x1045a7000 - 0x1045b7fff +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so
0x1045c2000 - 0x1045c2fff +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so
0x1045ca000 - 0x1045cbfff +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so
0x1045d3000 - 0x1045d9fff +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so
0x1045e2000 - 0x1045effff +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so
0x104605000 - 0x1046a0fff dyld (852) /usr/lib/dyld
0x10481d000 - 0x104826fff +_socket.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so
0x104878000 - 0x10487bfff +select.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so
0x104886000 - 0x10488afff +_struct.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so
0x104898000 - 0x10489cfff +binascii.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so
0x1049a5000 - 0x1049b3fff +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
0x104a03000 - 0x104a03fff +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so
0x104a0b000 - 0x104a49fff +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x104aad000 - 0x104adafff +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so
0x104af2000 - 0x104af3fff +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
0x104bbc000 - 0x104bbdfff +_posixsubprocess.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so
0x104c05000 - 0x104c17fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so
0x104c68000 - 0x104c6bfff +_csv.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so
0x104df6000 - 0x105159fff +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so
0x10527f000 - 0x108ceafff +libopenblasp-r0.3.7.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib
0x108ff4000 - 0x10910bfff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x109179000 - 0x1091affff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1091c3000 - 0x1091d8fff +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x113368000 - 0x113375fff +_multiarray_tests.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so
0x11338b000 - 0x11339dfff +_ctypes.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so
0x113434000 - 0x113435fff +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so
0x11343d000 - 0x113456fff +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
0x11352a000 - 0x11353bfff +_pocketfft_internal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/fft/_pocketfft_internal.cpython-37m-darwin.so
0x1135c4000 - 0x11362ffff +mtrand.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/mtrand.cpython-37m-darwin.so
0x11368a000 - 0x1136a7fff +_bit_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bit_generator.cpython-37m-darwin.so
0x1136c8000 - 0x1136f7fff +_common.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_common.cpython-37m-darwin.so
0x113712000 - 0x113766fff +_bounded_integers.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bounded_integers.cpython-37m-darwin.so
0x11378e000 - 0x1137a0fff +_mt19937.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_mt19937.cpython-37m-darwin.so
0x1137b1000 - 0x1137bdfff +_philox.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_philox.cpython-37m-darwin.so
0x1137cd000 - 0x1137d7fff +_pcg64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_pcg64.cpython-37m-darwin.so
0x1137e7000 - 0x1137eefff +_sfc64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_sfc64.cpython-37m-darwin.so
0x1137fd000 - 0x11387ffff +_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_generator.cpython-37m-darwin.so
0x1139df000 - 0x1139e0fff +_appdirs.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_appdirs.so
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0x1139f1000 - 0x113a12fff +_serialize.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_serialize.cpython-37m-darwin.so
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0x7fff33ef7000 - 0x7fff33f03fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff34482000 - 0x7fff344d2fff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff34d2c000 - 0x7fff34d2efff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff34d46000 - 0x7fff34d5bfff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff34db1000 - 0x7fff34e1cfff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff34ede000 - 0x7fff34ee1fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff34f2b000 - 0x7fff35317fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff35aa1000 - 0x7fff35aa8fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff362e9000 - 0x7fff36319fff libtidy.A.dylib (18.1) /usr/lib/libtidy.A.dylib
0x7fff3631a000 - 0x7fff3633afff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff3633b000 - 0x7fff3634efff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff3634f000 - 0x7fff36372fff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff36373000 - 0x7fff36376fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff36377000 - 0x7fff3637afff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff3637b000 - 0x7fff3637efff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff3637f000 - 0x7fff36386fff com.apple.ImageCapture (1711.5.2 - 1711.5.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff36387000 - 0x7fff37573fff com.apple.JavaScriptCore (16611 - 16611.2.7.1.4) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff375df000 - 0x7fff376f1fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff376f2000 - 0x7fff37785fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37786000 - 0x7fff379d0fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff383cc000 - 0x7fff383dbfff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff383dc000 - 0x7fff38503fff com.apple.QuickLookUIFramework (5.0 - 928.3) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38af0000 - 0x7fff38af0fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff391a4000 - 0x7fff391abfff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff391ac000 - 0x7fff391bafff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff391bb000 - 0x7fff391d2fff libAccessibility.dylib (2885.46) /usr/lib/libAccessibility.dylib
0x7fff3bbf5000 - 0x7fff3bc17fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bc18000 - 0x7fff3bcaffff com.apple.AirPlaySync (1.0 - 2775.22) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c83c000 - 0x7fff3c8bffff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3c8c0000 - 0x7fff3c8c3fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3c8c4000 - 0x7fff3c8c7fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3c9c0000 - 0x7fff3c9c0fff com.apple.avfoundation (2.0 - 2015.22.4.1) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cb7a000 - 0x7fff3cb99fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cce6000 - 0x7fff3cd3cfff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cd3d000 - 0x7fff3cd5afff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cd5b000 - 0x7fff3cd5efff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d176000 - 0x7fff3d17cfff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d2ed000 - 0x7fff3d304fff com.apple.SafariServices.framework (16611 - 16611.2.7.1.4) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d4b4000 - 0x7fff3d4bffff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d4d4000 - 0x7fff3d4e6fff libmis.dylib (274.120.2) /usr/lib/libmis.dylib
0x7fff3d4e7000 - 0x7fff3d4eafff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d503000 - 0x7fff3d672fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d673000 - 0x7fff3d8cefff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d8cf000 - 0x7fff3d9e5fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3d9e6000 - 0x7fff3d9f7fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e01a000 - 0x7fff3e07cfff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e07d000 - 0x7fff3e0a2fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e75e000 - 0x7fff3e88afff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e88b000 - 0x7fff3ed2bfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3ed2c000 - 0x7fff3ee14fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fb57000 - 0x7fff3fbd4fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40d0a000 - 0x7fff40d13fff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff40d6e000 - 0x7fff40d71fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41196000 - 0x7fff411b4fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff4373f000 - 0x7fff439b2fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff46283000 - 0x7fff4628efff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff478b9000 - 0x7fff478f9fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff51510000 - 0x7fff5153dfff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff5153e000 - 0x7fff51558fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51559000 - 0x7fff515f8fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff53e7d000 - 0x7fff53eb3fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff554a7000 - 0x7fff554aafff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5cdf6000 - 0x7fff5ce17fff libKoreanConverter.dylib (90) /System/Library/CoreServices/Encodings/libKoreanConverter.dylib
0x7fff5ce1a000 - 0x7fff5ce29fff libSimplifiedChineseConverter.dylib (90) /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x7fff5dbd3000 - 0x7fff5e062fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.4.5 - 16.0.4) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5e063000 - 0x7fff5eabefff libSC.dylib (4.5.14) /System/Library/Extensions/AMDShared.bundle/Contents/PlugIns/libSC.dylib
0x7fff5edf3000 - 0x7fff5fddafff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.4.5 - 16.0.4) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff69589000 - 0x7fff6958dfff libmetal_timestamp.dylib (31001.189) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6b9d4000 - 0x7fff6b9dafff libCoreFSCache.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6b9db000 - 0x7fff6b9dffff libCoreVMClient.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6b9e0000 - 0x7fff6b9effff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6b9f0000 - 0x7fff6b9f2fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6b9f3000 - 0x7fff6b9fbfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6b9fc000 - 0x7fff6ba2ffff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6ba30000 - 0x7fff6ba6cfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6ba6d000 - 0x7fff6bc00fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bc01000 - 0x7fff6bc0bfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bc0c000 - 0x7fff6bd89fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bd8a000 - 0x7fff6bdb2fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d04b000 - 0x7fff6d0a3fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6dbcd000 - 0x7fff6dde8fff com.apple.AMDMTLBronzeDriver (4.5.14 - 4.0.5) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver
0x7fff6df4d000 - 0x7fff6df9cfff ATIRadeonX4000SCLib.dylib (4.5.14) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib
0x7fff6e14d000 - 0x7fff6e154fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e155000 - 0x7fff6e23cfff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f3cc000 - 0x7fff6f3d6fff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6f7ba000 - 0x7fff6f7ccfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73a9a000 - 0x7fff73aa5fff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73cbb000 - 0x7fff73cd3fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77849000 - 0x7fff77850fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 4872K 12
CG image 2660K 34
CG raster data 2276K 4
CoreAnimation 7172K 30
CoreGraphics 16K 3
CoreServices 624K 2
CoreUI image data 4236K 33
Foundation 52K 2
Kernel Alloc Once 8K 1
MALLOC 550.3M 440
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 132K 33
Stack 156.8M 34
Stack Guard 56.0M 1
VM_ALLOCATE 221.2M 504
VM_ALLOCATE (reserved) 224.0M 2 reserved VM address space (unallocated)
__DATA 44.2M 682
__DATA_CONST 23.3M 269
__DATA_DIRTY 1196K 168
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 549.7M 209
__OBJC_RO 70.2M 1
__OBJC_RW 2480K 2
__TEXT 680.7M 635
__UNICODE 588K 1
mapped file 871.3M 346
shared memory 768K 18
=========== ======= =======
TOTAL 3.6G 3489
TOTAL, minus reserved VM space 3.2G 3489
System Profile:
Network Service: USB 10/100/1000 LAN, Ethernet, en7
Network Service: Wi-Fi, AirPort, en0
bridge_os_version: Bridge OS 5.4 (18P4663)
Boot Volume File System Type: apfs
bridge_model: iBridge2,3
Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1
Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1
USB Device: USB3.1 Hub
USB Device: USB 10/100/1000 LAN
USB Device: USB 3.1 Bus
USB Device: USB2.1 Hub
USB Device: USB2.0 Hub
USB Device: USB2.0 Hub
USB Device: UC02
USB Device: USB Storage
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.5
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.5
Model: MacBookPro15,1, BootROM 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0), 6 processors, 6-Core Intel Core i7, 2.2 GHz, 16 GB, SMC
Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555XItem, Radeon Pro 555X, spdisplays_pcie_device, 4 GB
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Feb 16 2021 02:10:42 version 9.30.444.10.32.5.67 FWID 01-a00c1314
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jhlee/Documents/SKK_KKK/4_s.aureus/4_Modeling/_Dock/ref/6lkk.cif
6lkk.cif title:
Two-component system protein mediate signal transduction [more info...]
Chain information for 6lkk.cif #1
---
Chain | Description
A | ABC transporter, solute-binding protein
Non-standard residues in 6lkk.cif #1
---
G6P — 6-O-phosphono-alpha-D-glucopyranose (ALPHA-D-GLUCOSE-6-PHOSPHATE;
6-O-phosphono-alpha-D-glucose; 6-O-phosphono-D-glucose; 6-O-phosphono-glucose)
OpenGL version: 4.1 ATI-4.5.14
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,1
Processor Name: 6-Core Intel Core i7
Processor Speed: 2.2 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 6 days 8:39
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Radeon Pro 555X:
Chipset Model: Radeon Pro 555X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00e3
ROM Revision: 113-C980AL-075
VBIOS Version: 113-C97501P-005
EFI Driver Version: 01.A1.075
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
27IPS86ADH:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 75.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: DVI or HDMI
Adapter Firmware Version: 7.55
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-Clipper: 0.15.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-ISOLDE: 1.1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-Phenix: 0.1
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.1
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
MolecularDynamicsViewer: 1.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.3.3
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Structure Analysis |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in AtomSearchTree implementation |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Could be called from hbonds, clashes, build_structure, or addh. The _Node constructor is pretty complicated -- I would need an actual test case to make any headway.