![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 20, 2025: Today
- 1:48 PM Ticket #19187 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 1:14 PM Ticket #19194 (Boltz prediction fails with sequence pasted into GUI) closed by
- fixed: Fixed. I made a change on October 6, 2025 to check if you specify the …
- 1:12 PM Ticket #19194 (Boltz prediction fails with sequence pasted into GUI) created by
- […]
- 12:33 PM Ticket #19193 (ChimeraX bug report submission) created by
- […]
- 12:11 PM Ticket #19183 (Crash in swap_buffers) closed by
- duplicate: Crash in swap buffers when Side View calls …
- 12:03 PM Ticket #19192 (Boltz: TypeError: 'NoneType' object is not iterable when no sequences ...) closed by
- fixed: Fixed. Now gives clear error message of boltz prediction run with no …
- 11:54 AM Ticket #19182 (Crash in event loop) closed by
- can't reproduce: Hi Arul, Thanks for reporting this problem. I did not get a crash …
- 11:47 AM Ticket #19192 (Boltz: TypeError: 'NoneType' object is not iterable when no sequences ...) created by
- […]
- 11:34 AM Ticket #19181 (KVFinder on old MacOS) closed by
- limitation
- 11:32 AM Ticket #19180 (Crash in event loop) closed by
- can't reproduce: This one involved running a modal dialog event loop, but many similar …
- 11:29 AM Ticket #19178 (Crash in swap_buffers) closed by
- duplicate: Another crash when side view is calling Qt …
- 11:21 AM Ticket #19179 (Session restore: truncated session file) closed by
- nonchimerax: Could conceivably raise some kind of more informative UserError in …
- 11:15 AM Ticket #19176 (Session save: lz4 chunk compression out of memory) closed by
- duplicate
- 11:08 AM Ticket #19174 (Crash using open/save dialog) closed by
- can't reproduce
- 11:06 AM Ticket #19173 (Crash using open/save dialog) closed by
- can't reproduce
- 10:56 AM Ticket #18869 (OpenMM compiler failure on Windows) closed by
- duplicate
- 10:55 AM Ticket #19191 (ChimeraX bug report submission) created by
- […]
- 8:26 AM Ticket #19190 (ChimeraX bug report submission) created by
- […]
Oct 19, 2025: Yesterday
- 11:33 PM Ticket #19189 (ChimeraX bug report submission) created by
- […]
- 9:24 PM Ticket #19188 (boltz predict: cannot execute Boltz) created by
- […]
- 3:59 PM Ticket #19187 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 1:45 PM Ticket #19186 (Late registration of URL scheme generates error/warning) created by
- […]
- 5:54 AM Ticket #19185 (glClear after waking from sleep: invalid framebuffer operation) created by
- […]
- 2:29 AM Ticket #19184 (Find Cavities problem with insertion codes) created by
- […]
Oct 18, 2025:
- 3:59 PM Ticket #19183 (Crash in swap_buffers) created by
- […]
- 1:42 PM Ticket #19182 (Crash in event loop) created by
- […] Structure2D_COMPOUND_CID_5280805.sdf
- 9:49 AM Ticket #19181 (KVFinder on old MacOS) created by
- […]
Oct 17, 2025:
- 10:46 PM Ticket #19180 (Crash in event loop) created by
- […]
- 7:40 PM Ticket #19179 (Session restore: truncated session file) created by
- […]
- 2:42 PM Ticket #19178 (Crash in swap_buffers) created by
- […]
- 12:04 PM Ticket #19177 (isolde set gpuDeviceIndex: Specified DeviceIndex but not ...) created by
- […]
- 10:41 AM Ticket #19176 (Session save: lz4 chunk compression out of memory) created by
- […]
- 10:41 AM Ticket #19175 (Session save: lz4 chunk compression out of memory) created by
- […]
- 2:39 AM Ticket #19174 (Crash using open/save dialog) created by
- […]
- 1:36 AM Ticket #19173 (Crash using open/save dialog) created by
- […]
Oct 16, 2025:
- 7:10 PM Ticket #19172 (Minimization CPU fallback: This Integrator is already bound to a context) created by
- […] 10mer_2.pdb
- 4:52 PM Ticket #19169 (Read EMAN HDF5: file signature not found) closed by
- nonchimerax: Unfortunately the user is trying to open a ChimeraX session file that …
- 4:26 PM Ticket #19171 (SEQCROW: mol_builder: 'NoneType' object has no attribute 'group') closed by
- duplicate: Duplicate of #17445
- 1:59 PM windows-signing edited by
- (diff)
- 12:00 PM Ticket #19171 (SEQCROW: mol_builder: 'NoneType' object has no attribute 'group') created by
- […]
- 8:00 AM Ticket #19170 (Unwanted clipping plane) created by
- […] clipping_bug_report.zip
- 3:02 AM Ticket #19169 (Read EMAN HDF5: file signature not found) created by
- […]
- 1:23 AM Ticket #19168 (ANNOTEX error (path separator on Windows)) created by
- […]
Oct 15, 2025:
- 5:34 PM Ticket #19164 (Crash using open/save dialog, along with many OpenGL errors) closed by
- can't reproduce
- 5:15 PM Ticket #19167 (just saving and restoring session gives Animation message in Log when ...) created by
- In today's daily build UCSF ChimeraX version: 1.11.dev202510150607 …
- 4:38 PM Ticket #19166 (Make scenes restore surface per-vertex coloring and triangle masking) created by
- Currently per-vertex coloring and triangle masking (surface zones) are …
- 2:53 PM Ticket #19165 (Improving usability of deep mutational scan visualization tools) created by
- Willow and I discussed for an hour today a dozen aspects of how to …
- 2:44 PM Ticket #19164 (Crash using open/save dialog, along with many OpenGL errors) created by
- […]
- 2:42 PM ChangeLog edited by
- (diff)
- 2:08 PM Ticket #19133 (KVFinder crash with large grid spacing / step size) closed by
- fixed: Fixed by limiting grid spacing value to >0 and <5
- 1:54 PM Ticket #19163 (Arrows save in sessions, but not if in scenes) created by
- […]
- 1:22 PM Ticket #19149 (Scene restore is restoring calling each model.restore_scene() many times) closed by
- fixed: That was indeed the issue. I have now exdented that loop.
- 1:16 PM Ticket #19162 (ChimeraX bug report submission) closed by
- not a bug
- 1:16 PM Ticket #19161 (ChimeraX bug report submission) closed by
- not a bug
- 1:15 PM Ticket #19162 (ChimeraX bug report submission) created by
- […]
- 1:14 PM Ticket #19161 (ChimeraX bug report submission) created by
- […]
- 1:13 PM Ticket #19160 (ChimeraX bug report submission) closed by
- not a bug
- 1:13 PM Ticket #19160 (ChimeraX bug report submission) created by
- […]
- 1:12 PM Ticket #19159 (ChimeraX bug report submission) closed by
- not a bug
- 1:11 PM Ticket #19159 (ChimeraX bug report submission) created by
- […]
- 1:11 PM Ticket #19158 (ChimeraX bug report submission) closed by
- not a bug
- 1:10 PM Ticket #19158 (ChimeraX bug report submission) created by
- […]
- 1:09 PM Ticket #19157 (ChimeraX bug report submission) closed by
- not a bug
- 1:08 PM Ticket #19157 (ChimeraX bug report submission) created by
- […]
- 1:03 PM Ticket #19156 (ChimeraX bug report submission) closed by
- not a bug
- 1:03 PM Ticket #19155 (ChimeraX bug report submission) closed by
- not a bug
- 1:02 PM Ticket #19154 (ChimeraX bug report submission) closed by
- not a bug
- 1:01 PM Ticket #19153 (ChimeraX bug report submission) closed by
- not a bug
- 11:56 AM phenix-10-15-25 edited by
- (diff)
- 11:56 AM phenix-10-15-25 edited by
- (diff)
- 11:54 AM phenix-10-15-25 edited by
- (diff)
- 11:54 AM phenix-10-15-25 edited by
- (diff)
- 10:27 AM Ticket #19156 (ChimeraX bug report submission) created by
- […]
- 10:25 AM Ticket #19155 (ChimeraX bug report submission) created by
- […]
- 10:21 AM phenix-10-15-25 edited by
- (diff)
- 10:19 AM Ticket #19154 (ChimeraX bug report submission) created by
- […]
- 10:16 AM phenix-10-15-25 created by
- 10:14 AM Features edited by
- (diff)
- 9:42 AM Ticket #19153 (ChimeraX bug report submission) created by
- […]
- 12:08 AM Ticket #19143 (Make bug report CGI script drop anonymous reports from old ChimeraX ...) closed by
- fixed: Makes sense to me too. I changed the bug report dialog to catch HTTP …
Oct 14, 2025:
- 10:00 PM Ticket #19152 (ChimeraX bug report submission) closed by
- not a bug: more bug reporter dialog testing
- 9:59 PM Ticket #19152 (ChimeraX bug report submission) created by
- […]
- 8:16 PM Ticket #19151 (Various minimize errors) created by
- […]
- 6:56 PM Ticket #19150 (Add scene support for volumes) closed by
- fixed: Done. Zach had added some initial scene support for volumes that …
- 6:48 PM Ticket #19150 (Add scene support for volumes) created by
- Make the scenes command and tool work with volumes.
- 6:45 PM Ticket #19149 (Scene restore is restoring calling each model.restore_scene() many times) created by
- […]
- 6:41 PM Ticket #19148 (ChimeraX bug report submission) closed by
- not a bug: more bug submission debugging
- 6:41 PM Ticket #19148 (ChimeraX bug report submission) created by
- […]
- 6:35 PM Ticket #19147 (ChimeraX bug report submission) closed by
- not a bug: Should have been rejected by bug submission
- 6:34 PM Ticket #19147 (ChimeraX bug report submission) created by
- […]
- 6:29 PM Ticket #19146 (ChimeraX bug report submission) closed by
- not a bug: Darn, this should have been an anonymous bug submission test.
- 6:28 PM Ticket #19145 (ChimeraX bug report submission) closed by
- not a bug: Darn, this should have been an anonymous bug submission test.
- 6:19 PM Ticket #19146 (ChimeraX bug report submission) created by
- […]
- 6:18 PM Ticket #19145 (ChimeraX bug report submission) created by
- […]
- 3:40 PM Ticket #19144 (Make an interactive deep mutation scan trace plot) created by
- I was looking for a way to see an overview of the DMS scores when …
- 3:33 PM Ticket #19142 (Make bug reporter discourage anonymous reports from old chimerax versions) closed by
- fixed: Done. I added the text "Bugs in older ChimeraX versions will not be …
- 2:24 PM Ticket #19141 (Disable Windows and Linux crash reporting) closed by
- fixed: Fixed. Crashes will only be detected using Python faulthandler on Mac.
- 1:04 PM Ticket #19143 (Make bug report CGI script drop anonymous reports from old ChimeraX ...) created by
- To reduce the burden triaging duplicate bug reports we decided …
- 1:02 PM Ticket #19142 (Make bug reporter discourage anonymous reports from old chimerax versions) created by
- Add a sentence to Bug Reporter that says we will not evaluate bug …
- 12:58 PM Ticket #19141 (Disable Windows and Linux crash reporting) created by
- Windows and Linux crash reports have been useless and take time to …
- 12:34 PM Ticket #19140 (Creating zero length arrow reports "Can't find font for arrow".) created by
- […]
- 12:32 PM Ticket #19124 (visible arrow & label become invisible when session restored) closed by
- fixed: Fixed. Labels and arrows had an attribute "visibility" that did not …
- 12:04 PM Ticket #18691 (Preset file contains non-Unicode character) closed by
- fixed: Fix: …
- 11:28 AM Dev2025-10-20 created by
- 11:27 AM 2025-10-16 created by
- 11:27 AM 2025-10-9 edited by
- (diff)
- 11:22 AM DeveloperMeetings edited by
- (diff)
- 11:20 AM Ticket #19136 (Crash in swap_buffers) closed by
- nonchimerax: Graphics driver crash, Windows, Intel(R) HD Graphics 4600, driver …
- 11:13 AM Ticket #19135 (Crash using open/save dialog) closed by
- can't reproduce
- 9:23 AM Ticket #19139 (ChimeraX bug report submission) closed by
- not a bug
- 9:22 AM Ticket #19139 (ChimeraX bug report submission) created by
- […]
- 9:11 AM Ticket #19138 (ChimeraX bug report submission) closed by
- not a bug
- 9:11 AM Ticket #19138 (ChimeraX bug report submission) created by
- […]
- 9:05 AM Ticket #19137 (ChimeraX bug report submission) closed by
- not a bug
- 9:02 AM Ticket #19137 (ChimeraX bug report submission) created by
- […]
- 7:47 AM Ticket #19136 (Crash in swap_buffers) created by
- […]
- 7:13 AM Ticket #19135 (Crash using open/save dialog) created by
- […]
- 6:13 AM Ticket #19134 (SEQCROW: index is out of bounds reading .out file) created by
- […] SAPT.out
- 3:41 AM Ticket #19133 (KVFinder crash with large grid spacing / step size) created by
- […]
- 2:18 AM Ticket #19132 (Model Archive non-chain residue sequence number is '.') created by
- […] …
- 12:44 AM Ticket #19131 (Save mmCIF: not a legal chain id (underscore)) created by
- […]
- 12:05 AM Ticket #19130 (Modeller: 'charmap' codec can't encode character) created by
- […]
Oct 13, 2025:
- 11:12 PM Ticket #19129 (Allow XTC coords to use float32) created by
- […]
- 10:09 PM Ticket #19128 (ChimeraX bug report submission) closed by
- not a bug
- 10:09 PM Ticket #19127 (ChimeraX bug report submission) closed by
- not a bug
- 10:08 PM Ticket #19128 (ChimeraX bug report submission) created by
- […]
- 10:08 PM Ticket #19127 (ChimeraX bug report submission) created by
- […]
- 10:00 PM Ticket #19126 (ChimeraX bug report submission) closed by
- not a bug
- 10:00 PM Ticket #19126 (ChimeraX bug report submission) created by
- […]
- 10:00 PM Ticket #19125 (ChimeraX bug report submission) closed by
- not a bug
- 9:58 PM Ticket #19125 (ChimeraX bug report submission) created by
- […]
- 7:36 PM Ticket #19110 (Make mutationscores associate easier to use when sequences don't match) closed by
- fixed: Done. Made mutationscores structure command able to align to mutation …
- 5:44 PM Ticket #19124 (visible arrow & label become invisible when session restored) created by
- I run a script that fades out my label and arrow. Then in the model …
- 5:21 PM Ticket #19120 (H-Bonds: acc_phi_psi() bad number of arguments) closed by
- not a bug: Bad structure (e.g. "/A DG 4 O4' has bad number of bonds")
- 5:18 PM Ticket #19123 (Crash on Mac waking from sleep) closed by
- duplicate
- 4:24 PM Dev2025-10-13 edited by
- (diff)
- 3:10 PM Ticket #19123 (Crash on Mac waking from sleep) created by
- […]
- 2:43 PM Ticket #19122 (MemoryError reading trajectory) closed by
- limitation: Hi Shahin, Thanks for reporting this problem. ChimeraX ran out of …
- 2:24 PM Ticket #19113 (Crash gathering OpenGL info for bug report) closed by
- can't reproduce: Something is going on with the OpenGL setup. Maybe a bad driver, or …
- 2:12 PM Ticket #19121 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:08 PM Ticket #19119 (Crash using open/save dialog) closed by
- can't reproduce
- 2:06 PM Ticket #19116 (Crash in swap_buffers, macOS 26 status line expose event) closed by
- can't reproduce: macOS 26 crash in OpenGL swap buffers rendering status line on expose …
- 2:06 PM Ticket #19118 (Crash using open/save dialog) closed by
- can't reproduce
- 2:03 PM Ticket #19114 (glTexImage2D failure) closed by
- nonchimerax: OpenGL out of memory error trying to create a 2D texture for drawing …
- 1:59 PM Ticket #19115 ('ArrayGridData' object has no attribute 'dicom_data') closed by
- duplicate
- 1:52 PM Ticket #19112 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:49 PM Ticket #19111 (Crash using open/save dialog) closed by
- can't reproduce
- 1:43 PM Ticket #19108 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 1:41 PM Ticket #19107 (Segmentations: chimerax misspelled in import statement) closed by
- duplicate: Hi Otniel, Thanks for reporting this problem. It is fixed in the …
- 1:39 PM Ticket #19105 (Crash in swap_buffers) closed by
- duplicate: Seems macOS 26 and Qt are not getting along. This status line crash …
- 1:30 PM Ticket #19104 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:29 PM Ticket #19103 (Crash using open/save dialog) closed by
- can't reproduce
- 1:25 PM Ticket #19102 (wrapped C/C++ object of type StatusOpenGLWindow has been deleted) closed by
- can't reproduce: Can't reproduce this no matter how many times I cause the sequence …
- 12:51 PM Ticket #19122 (MemoryError reading trajectory) created by
- […]
- 12:12 PM Ticket #19101 (Crash using open/save dialog) closed by
- can't reproduce
- 11:57 AM Ticket #19098 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:56 AM Ticket #19097 (Crash using open/save dialog) closed by
- can't reproduce
- 11:35 AM Ticket #19094 (Crash in swap_buffers) closed by
- nonchimerax: Expose event of status line results in crash in OpenGL swap buffers in …
- 11:25 AM Ticket #19093 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Need the file
- 11:05 AM Ticket #19091 (Crash in event loop) closed by
- can't reproduce: We've gotten several of these.
- 9:43 AM Ticket #19121 (ffmpeg: Permission Denied) created by
- […]
- 9:20 AM Ticket #19120 (H-Bonds: acc_phi_psi() bad number of arguments) created by
- […]
- 8:51 AM Ticket #19119 (Crash using open/save dialog) created by
- […]
- 8:47 AM Ticket #19118 (Crash using open/save dialog) created by
- […]
- 6:56 AM Ticket #19117 (Crash in event loop) created by
- […]
- 6:23 AM Ticket #19116 (Crash in swap_buffers, macOS 26 status line expose event) created by
- […]
Oct 12, 2025:
- 11:22 PM Ticket #19115 ('ArrayGridData' object has no attribute 'dicom_data') created by
- […]
- 8:05 PM Ticket #19114 (glTexImage2D failure) created by
- […]
- 8:03 PM Ticket #19113 (Crash gathering OpenGL info for bug report) created by
- […]
- 7:53 AM Ticket #19112 (Crash on Mac waking from sleep) created by
- […]
- 5:54 AM Ticket #19111 (Crash using open/save dialog) created by
- […]
Oct 11, 2025:
- 10:30 PM Ticket #19110 (Make mutationscores associate easier to use when sequences don't match) created by
- Willow said associating structures with DMS data where the sequences …
- 10:18 PM Ticket #19109 (Add 2D label and arrow GUI) created by
- Add a GUI to place labels and arrows and adjust their settings like …
- 9:01 AM Ticket #19108 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 3:54 AM Ticket #19107 (Segmentations: chimerax misspelled in import statement) created by
- […]
- 1:44 AM Ticket #19106 (GLOzone not found for unknown) created by
- […]
Oct 10, 2025:
- 6:19 PM Ticket #19105 (Crash in swap_buffers) created by
- […]
- 10:30 AM Ticket #19104 (Crash on Mac waking from sleep) created by
- […]
- 10:20 AM Ticket #19103 (Crash using open/save dialog) created by
- […]
- 9:53 AM Ticket #19102 (wrapped C/C++ object of type StatusOpenGLWindow has been deleted) created by
- […]
- 9:30 AM Ticket #19101 (Crash using open/save dialog) created by
- […]
- 8:41 AM Ticket #19100 (UnboundLocalError: cannot access local variable 'dirs' where it is not ...) created by
- […]
- 6:27 AM Ticket #19099 ('Surface' object has no attribute 'data') created by
- […]
- 5:33 AM Ticket #19098 (Crash on Mac waking from sleep) created by
- […]
- 4:41 AM Ticket #19097 (Crash using open/save dialog) created by
- […]
- 2:39 AM Ticket #19096 (SEQCROW: UV/Vis Spectrum: could not convert string to float) created by
- […]
- 2:04 AM Ticket #19095 (Crash in chem_group on Windows) created by
- […]
- 1:35 AM Ticket #19094 (Crash in swap_buffers) created by
- […]
Oct 9, 2025:
- 8:23 PM Ticket #19093 (UnicodeDecodeError reading PDB file) created by
- […]
- 7:05 PM Ticket #19092 (Test of improved Mac crash report formatting.) closed by
- not a bug
- 7:04 PM Ticket #18819 (Improve Mac crash dump formatting of stack trace) closed by
- fixed: I improved the appearance of Mac crash report stack traces so the …
- 6:56 PM Ticket #19092 (Test of improved Mac crash report formatting.) created by
- […]
- 6:30 PM Ticket #19091 (Crash in event loop) created by
- […]
- 4:35 PM windows-signing edited by
- (diff)
- 3:25 PM Ticket #19082 (Sequence search found 1 AlphaFold id that do not have AlphaFold ...) closed by
- fixed: The closest sequence to what you were searching for has UniProt …
- 3:03 PM Ticket #19090 (Place marker on maximum can place marker behind camera) closed by
- fixed: Fixed. The place marker on maximum code was indeed using the entire …
- 2:24 PM Ticket #19089 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:23 PM Ticket #19090 (Place marker on maximum can place marker behind camera) created by
- […]
- 2:20 PM Ticket #19089 (ffmpeg: Permission Denied) created by
- […]
- 2:07 PM Ticket #19087 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:06 PM windows-signing created by
- 2:05 PM Ticket #19080 (Crash in swap_buffers) closed by
- can't reproduce: I suspect this is a Qt Mac multi-display crash. The Log shows the …
- 2:03 PM Ticket #19085 (Crash in garbage collection) closed by
- can't reproduce
- 2:02 PM Ticket #19084 (Crash creating QMenuBar) closed by
- can't reproduce
- 1:59 PM Ticket #19083 (Crash in chem_group on Windows) closed by
- can't reproduce: *Possibly* fixed by #17278
- 1:59 PM Ticket #19079 (glClear: invalid framebuffer operation) closed by
- can't reproduce: A ticket from yesterday showed a crash with expose event for status …
- 1:58 PM Ticket #19088 (ffmpeg: Permission Denied) created by
- […]
- 1:51 PM Ticket #19081 (Crash using open/save dialog) closed by
- can't reproduce
- 1:49 PM Ticket #19087 (ffmpeg: Permission Denied) created by
- […]
- 11:06 AM WikiStart edited by
- (diff)
- 10:14 AM Ticket #19086 (Problem mapping features onto UniProt entry) created by
- […]
- 8:20 AM Ticket #19085 (Crash in garbage collection) created by
- […]
- 7:58 AM Ticket #19084 (Crash creating QMenuBar) created by
- […]
- 7:07 AM Ticket #19083 (Crash in chem_group on Windows) created by
- […]
- 3:47 AM Ticket #19082 (Sequence search found 1 AlphaFold id that do not have AlphaFold ...) created by
- […]
- 3:09 AM Ticket #19081 (Crash using open/save dialog) created by
- […]
- 2:42 AM Ticket #19080 (Crash in swap_buffers) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
