Opened 3 weeks ago

Last modified 3 weeks ago

#19168 accepted defect

ANNOTEX error (path separator on Windows)

Reported by: yinjiayue22@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)Here’s a courteous, ready-to-paste Description:

Description
I’m on Windows and successfully loaded ANNOTEX in ChimeraX 1.3. For a minimal test, I downloaded the Zenodo dataset (https://zenodo.org/records/10125088) and pointed Data folder to:
C:\Users\16021\Desktop\v_necatrix_annotation_data\annotation_data
This directory contains annotations.tsv (first column IDs like g1.t1, g2.t1, …) and a pdbs\ subfolder with matching files (g1.t1.pdb, g2.t1.pdb, …). When I click Search, ANNOTEX raises:
ValueError: invalid literal for int() with base 10: ':\Users\16021\Desktop\v_necatrix_annotation_data\annotation_data\pdbs\g1'
File "C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.6\site-packages\chimerax\annotex\proteome.py", line 139, in
    self.protein_list.sort(key=lambda x: int(x[1:x.index('.')]))
See log for complete Python traceback.

It seems the code is attempting to parse an integer from a full Windows path (e.g., ...\pdbs\g1...) rather than from the short ID (e.g., g1.t1). I would really appreciate guidance on whether this indicates a parsing fallback (ignoring annotations.tsv), a Windows-path handling issue, or a version-specific behavior. Happy to try any suggested patches/workarounds. Thank you!

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> devel build C:\Users\16021\Desktop\ANNOTEX\ANNOTEX

running build  
running build_py  
creating build  
creating build\lib  
creating build\lib\chimerax  
creating build\lib\chimerax\annotex  
copying src\proteome.py -> build\lib\chimerax\annotex  
copying src\tool.py -> build\lib\chimerax\annotex  
copying src\\__init__.py -> build\lib\chimerax\annotex  
running bdist_wheel  
installing to build\bdist.win-amd64\wheel  
running install  
running install_lib  
creating build\bdist.win-amd64  
creating build\bdist.win-amd64\wheel  
creating build\bdist.win-amd64\wheel\chimerax  
creating build\bdist.win-amd64\wheel\chimerax\annotex  
copying build\lib\chimerax\annotex\proteome.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
copying build\lib\chimerax\annotex\tool.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
copying build\lib\chimerax\annotex\\__init__.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
running install_egg_info  
running egg_info  
creating ChimeraX_ANNOTEX.egg-info  
writing ChimeraX_ANNOTEX.egg-info\PKG-INFO  
writing dependency_links to ChimeraX_ANNOTEX.egg-info\dependency_links.txt  
writing requirements to ChimeraX_ANNOTEX.egg-info\requires.txt  
writing top-level names to ChimeraX_ANNOTEX.egg-info\top_level.txt  
writing manifest file 'ChimeraX_ANNOTEX.egg-info\SOURCES.txt'  
reading manifest file 'ChimeraX_ANNOTEX.egg-info\SOURCES.txt'  
writing manifest file 'ChimeraX_ANNOTEX.egg-info\SOURCES.txt'  
Copying ChimeraX_ANNOTEX.egg-info to build\bdist.win-
amd64\wheel\\.\ChimeraX_ANNOTEX-1.0-py3.9.egg-info  
running install_scripts  
creating build\bdist.win-amd64\wheel\ChimeraX_ANNOTEX-1.0.dist-info\WHEEL  
creating 'dist\ChimeraX_ANNOTEX-1.0-py3-none-any.whl' and adding
'build\bdist.win-amd64\wheel' to it  
adding 'chimerax/annotex/__init__.py'  
adding 'chimerax/annotex/proteome.py'  
adding 'chimerax/annotex/tool.py'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/METADATA'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/WHEEL'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/top_level.txt'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/RECORD'  
removing build\bdist.win-amd64\wheel  
Distribution is in
C:\Users\16021\Desktop\ANNOTEX\ANNOTEX\dist\ChimeraX_ANNOTEX-1.0-py3-none-
any.whl  
  

> devel install C:\Users\16021\Desktop\ANNOTEX\ANNOTEX

running build  
running build_py  
running bdist_wheel  
installing to build\bdist.win-amd64\wheel  
running install  
running install_lib  
creating build\bdist.win-amd64\wheel  
creating build\bdist.win-amd64\wheel\chimerax  
creating build\bdist.win-amd64\wheel\chimerax\annotex  
copying build\lib\chimerax\annotex\proteome.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
copying build\lib\chimerax\annotex\tool.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
copying build\lib\chimerax\annotex\\__init__.py -> build\bdist.win-
amd64\wheel\\.\chimerax\annotex  
running install_egg_info  
running egg_info  
writing ChimeraX_ANNOTEX.egg-info\PKG-INFO  
writing dependency_links to ChimeraX_ANNOTEX.egg-info\dependency_links.txt  
writing requirements to ChimeraX_ANNOTEX.egg-info\requires.txt  
writing top-level names to ChimeraX_ANNOTEX.egg-info\top_level.txt  
reading manifest file 'ChimeraX_ANNOTEX.egg-info\SOURCES.txt'  
writing manifest file 'ChimeraX_ANNOTEX.egg-info\SOURCES.txt'  
Copying ChimeraX_ANNOTEX.egg-info to build\bdist.win-
amd64\wheel\\.\ChimeraX_ANNOTEX-1.0-py3.9.egg-info  
running install_scripts  
creating build\bdist.win-amd64\wheel\ChimeraX_ANNOTEX-1.0.dist-info\WHEEL  
creating 'dist\ChimeraX_ANNOTEX-1.0-py3-none-any.whl' and adding
'build\bdist.win-amd64\wheel' to it  
adding 'chimerax/annotex/__init__.py'  
adding 'chimerax/annotex/proteome.py'  
adding 'chimerax/annotex/tool.py'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/METADATA'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/WHEEL'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/top_level.txt'  
adding 'ChimeraX_ANNOTEX-1.0.dist-info/RECORD'  
removing build\bdist.win-amd64\wheel  
Distribution is in
C:\Users\16021\Desktop\ANNOTEX\ANNOTEX\dist\ChimeraX_ANNOTEX-1.0-py3-none-
any.whl  
[toolshed install](help:user/commands/toolshed.html#install)  
C:\Users\16021\Desktop\ANNOTEX\ANNOTEX\dist\ChimeraX_ANNOTEX-1.0-py3-none-  
any.whl  
  
[toolshed install  
C:\Users\16021\Desktop\ANNOTEX\ANNOTEX\dist\ChimeraX_ANNOTEX-1.0-py3-none-  
any.whl](cxcmd:toolshed install  
C:\\\Users\\\16021\\\Desktop\\\ANNOTEX\\\ANNOTEX\\\dist\\\ChimeraX_ANNOTEX-1.0-py3-none-  
any.whl)  
  
Errors may have occurred when running pip:  
pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\16021\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.3\site-packages  
sysconfig: C:\Users\16021\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\16021\AppData\Local\UCSF\ChimeraX\Python39\Include\ChimeraX-ANNOTEX  
sysconfig: C:\Users\16021\AppData\Roaming\Python\Python39\Include\ChimeraX-
ANNOTEX  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\16021\AppData\Local\UCSF\ChimeraX\Python39\Scripts  
sysconfig: C:\Users\16021\AppData\Roaming\Python\Python39\Scripts  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\16021\AppData\Local\UCSF\ChimeraX  
sysconfig: C:\Users\16021\AppData\Roaming\Python  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\16021\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN  
sysconfig: C:\Users\16021\AppData\Roaming\Python\Python39\Include\UNKNOWN  
\---  
pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
c:\users\16021\desktop\annotex\annotex\dist\chimerax_annotex-1.0-py3-none-
any.whl  
Requirement already satisfied: ChimeraX-Core~=1.2 in c:\program files\chimerax
1.3\bin\lib\site-packages (from ChimeraX-ANNOTEX==1.0) (1.3)  
Requirement already satisfied: ChimeraX-UI~=1.0 in c:\program files\chimerax
1.3\bin\lib\site-packages (from ChimeraX-ANNOTEX==1.0) (1.13.7)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
ANNOTEX==1.0) (1.1)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
ANNOTEX==1.0) (1.1)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
ANNOTEX==1.0) (1.0)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-
Graphics~=1.0->ChimeraX-UI~=1.0->ChimeraX-ANNOTEX==1.0) (1.1)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-
Graphics~=1.0->ChimeraX-UI~=1.0->ChimeraX-ANNOTEX==1.0) (1.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in c:\program
files\chimerax 1.3\bin\lib\site-packages (from ChimeraX-
SelInspector~=1.0->ChimeraX-UI~=1.0->ChimeraX-ANNOTEX==1.0) (1.0)  
Installing collected packages: ChimeraX-ANNOTEX  
Successfully installed ChimeraX-ANNOTEX-1.0  
\---  
Successfully installed ChimeraX-ANNOTEX-1.0  
Installed ChimeraX-ANNOTEX (1.0)  
  

> devel clean C:\Users\16021\Desktop\ANNOTEX\ANNOTEX

  

> ui tool show ANNOTEX

Traceback (most recent call last):  
File "C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.3\site-
packages\chimerax\annotex\proteome.py", line 139, in read_proteins  
self.protein_list.sort(key=lambda x: int(x[1:x.index('.')]))  
File "C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.3\site-
packages\chimerax\annotex\proteome.py", line 139, in <lambda>  
self.protein_list.sort(key=lambda x: int(x[1:x.index('.')]))  
ValueError: invalid literal for int() with base 10:
':\\\Users\\\16021\\\Desktop\\\v_necatrix_annotation_data\\\annotation_data\\\pdbs\\\g1'  
  
ValueError: invalid literal for int() with base 10:
':\\\Users\\\16021\\\Desktop\\\v_necatrix_annotation_data\\\annotation_data\\\pdbs\\\g1'  
  
File "C:\Users\16021\AppData\Local\UCSF\ChimeraX\1.3\site-
packages\chimerax\annotex\proteome.py", line 139, in  
self.protein_list.sort(key=lambda x: int(x[1:x.index('.')]))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 Core Profile Context 22.20.27.09.230330
OpenGL renderer: AMD Radeon(TM) RX 6500 XT
OpenGL vendor: ATI Technologies Inc.
Manufacturer: Maxsun
Model: MS-TZZ H610ITX 2.5G
OS: Microsoft Windows 11 专业版 (Build 22621)
Memory: 34,195,062,784
MaxProcessMemory: 137,438,953,344
CPU: 12 12th Gen Intel(R) Core(TM) i5-12490F
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-ANNOTEX: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 3 weeks ago

Component: Unassigned → Third Party
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → ANNOTEX error (path separator on Windows)

Hi Jiayue,

Thanks for reporting this problem. ANNOTEX is not handling file-path names on Windows correctly. I will open an issue about this on their Github repository.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

comment:2 by Eric Pettersen, 3 weeks ago

The issue I opened on the ANNOTEX Github: ​https://github.com/Barandun-Lab/ANNOTEX/issues/2

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