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Opened 3 weeks ago
Last modified 3 weeks ago
#19184 accepted defect
Find Cavities problem with insertion codes
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Surface/Binding Analysis | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
> select ::name="ACE"
60 atoms, 50 bonds, 9 residues, 2 models selected
> select ::name="NME"
54 atoms, 45 bonds, 9 residues, 2 models selected
> toolshed show
> select add #1
27490 atoms, 27848 bonds, 1695 residues, 2 models selected
> select add #2
34318 atoms, 34757 bonds, 2161 residues, 2 models selected
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show "Find Cavities"
pyKVFinder module not installed; fetching from PyPi repository...
Errors may have occurred when running pip:
pip standard error:
\---
ERROR: pip's dependency resolver does not currently take into account all the
packages that are installed. This behaviour is the source of the following
dependency conflicts.
nptyping 2.5.0 requires numpy<2.0.0,>=1.20.0; python_version >= "3.8", but you
have numpy 2.3.4 which is incompatible.
scipy 1.14.0 requires numpy<2.3,>=1.23.5, but you have numpy 2.3.4 which is
incompatible.
\---
pip standard output:
\---
\---
pyKVFinder module installed from PyPi repository.
> kvfinder
7T0W_P-w3 (1).pdb #1 contains residue insertion codes; KVFinder may not work
correctly
124 cavities found for 7T0W_P-w3 (1).pdb #1
7T0W_P-w3 (1).pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.25 | | 870.26 | 772.29 | 4029 | 14.01 | 4.35
1.1.10 | | 529.63 | 457.59 | 2452 | 14.17 | 6.84
1.1.106 | | 402.62 | 314.45 | 1864 | 6.63 | 2.55
1.1.40 | | 230.69 | 284.38 | 1068 | 12.44 | 6.09
1.1.32 | | 147.74 | 163.12 | 684 | 5.91 | 2.26
1.1.112 | | 141.48 | 163.47 | 655 | 4.53 | 1.47
1.1.53 | | 137.59 | 172.66 | 637 | 12.15 | 6.2
1.1.67 | | 136.73 | 152.62 | 633 | 6.63 | 2.63
1.1.73 | | 123.77 | 151.34 | 573 | 0 | 0
1.1.51 | | 120.31 | 138.14 | 557 | 5.37 | 1.48
1.1.69 | | 117.07 | 129.96 | 542 | 0 | 0
1.1.15 | | 103.03 | 123.51 | 477 | 0 | 0
1.1.36 | | 100.66 | 128.15 | 466 | 2.81 | 0.83
1.1.123 | | 92.45 | 106.15 | 428 | 0 | 0
1.1.30 | | 89.42 | 104.47 | 414 | 3.23 | 0.82
1.1.3 | | 88.78 | 98.35 | 411 | 0 | 0
1.1.93 | | 88.34 | 104.19 | 409 | 6.95 | 3.38
1.1.99 | | 82.94 | 95.24 | 384 | 4.95 | 1.93
1.1.19 | | 81.86 | 101.58 | 379 | 3 | 1.17
1.1.37 | | 75.82 | 104.12 | 351 | 7.68 | 4.33
1.1.12 | | 73.44 | 113.93 | 340 | 0 | 0
1.1.91 | | 70.63 | 84.64 | 327 | 4.72 | 1.73
1.1.118 | | 69.55 | 71.51 | 322 | 3.45 | 1.21
1.1.76 | | 64.8 | 74.87 | 300 | 4.02 | 1.28
1.1.86 | | 57.46 | 111.3 | 266 | 0 | 0
1.1.8 | | 53.35 | 72 | 247 | 0 | 0
1.1.34 | | 51.19 | 74.11 | 237 | 0 | 0
1.1.109 | | 48.82 | 74.87 | 226 | 0 | 0
1.1.28 | | 48.6 | 87.05 | 225 | 0 | 0
1.1.39 | | 48.6 | 68.81 | 225 | 0 | 0
1.1.79 | | 46.22 | 72.79 | 214 | 0 | 0
1.1.57 | | 40.61 | 75.81 | 188 | 0 | 0
1.1.2 | | 40.18 | 55.32 | 186 | 0 | 0
1.1.63 | | 39.53 | 58.33 | 183 | 1.2 | 0.36
1.1.55 | | 39.1 | 51.91 | 181 | 1.8 | 0.45
1.1.26 | | 37.8 | 57.66 | 175 | 0 | 0
1.1.120 | | 37.15 | 47.18 | 172 | 2.4 | 0.58
1.1.115 | | 35.42 | 49.45 | 164 | 0 | 0
1.1.87 | | 34.56 | 53.61 | 160 | 0 | 0
1.1.90 | | 34.13 | 52.76 | 158 | 0 | 0
1.1.59 | | 31.1 | 46.41 | 144 | 1.7 | 0.45
1.1.38 | | 29.81 | 46.31 | 138 | 0 | 0
1.1.35 | | 27 | 52.68 | 125 | 0 | 0
1.1.111 | | 27 | 52.68 | 125 | 0 | 0
1.1.75 | | 26.78 | 42.97 | 124 | 2.24 | 0.78
1.1.113 | | 26.78 | 45.38 | 124 | 0 | 0
1.1.116 | | 26.78 | 48.36 | 124 | 0 | 0
1.1.1 | | 26.57 | 49.4 | 123 | 3.98 | 2.32
1.1.68 | | 26.14 | 39.02 | 121 | 3 | 1.27
1.1.64 | | 25.92 | 44.39 | 120 | 0 | 0
1.1.124 | | 25.92 | 43.97 | 120 | 0 | 0
1.1.16 | | 25.7 | 45.26 | 119 | 0 | 0
1.1.103 | | 24.19 | 43.56 | 112 | 0 | 0
1.1.121 | | 23.98 | 33.46 | 111 | 1.34 | 0.45
1.1.18 | | 23.54 | 35.91 | 109 | 2.81 | 1.17
1.1.17 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.52 | | 22.46 | 35.92 | 104 | 2.68 | 1.24
1.1.105 | | 22.25 | 43.82 | 103 | 0 | 0
1.1.78 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.98 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.48 | | 21.38 | 45.52 | 99 | 3.23 | 1.61
1.1.71 | | 21.38 | 35.33 | 99 | 2.08 | 0.86
1.1.65 | | 21.17 | 39.07 | 98 | 0 | 0
1.1.33 | | 20.74 | 41.19 | 96 | 0 | 0
1.1.97 | | 20.3 | 30.83 | 94 | 1.8 | 0.67
1.1.45 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.95 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.100 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.31 | | 19.22 | 30.34 | 89 | 1.34 | 0.48
1.1.104 | | 18.36 | 30.09 | 85 | 1.34 | 0.32
1.1.50 | | 17.93 | 31.13 | 83 | 1.47 | 0.63
1.1.6 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.66 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.70 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.108 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.22 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.46 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.117 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.119 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.56 | | 16.42 | 30.38 | 76 | 2.55 | 1.38
1.1.110 | | 16.42 | 26.07 | 76 | 1.34 | 0.42
1.1.80 | | 15.12 | 25.91 | 70 | 2.16 | 0.78
1.1.81 | | 14.9 | 27.16 | 69 | 1.34 | 0.45
1.1.84 | | 13.39 | 22.07 | 62 | 0.85 | 0.28
1.1.102 | | 12.74 | 24.96 | 59 | 1.2 | 0.36
1.1.11 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.13 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.20 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.21 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.23 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.24 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.27 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.29 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.41 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.44 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.62 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.72 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.74 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.77 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.82 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.83 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.85 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.88 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.94 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.96 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.107 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.114 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.58 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.9 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.1.60 | | 11.45 | 26.34 | 53 | 1.9 | 0.97
1.1.92 | | 11.45 | 19.26 | 53 | 1.2 | 0.37
1.1.42 | | 8.64 | 18.34 | 40 | 1.2 | 0.4
1.1.61 | | 8.21 | 15.96 | 38 | 1.2 | 0.34
1.1.122 | | 7.99 | 17.28 | 37 | 0.85 | 0.23
1.1.89 | | 7.78 | 15.29 | 36 | 0.85 | 0.19
1.1.101 | | 7.78 | 15.19 | 36 | 1.2 | 0.29
1.1.4 | | 6.7 | 14.94 | 31 | 0.85 | 0.25
1.1.43 | | 6.05 | 11.62 | 28 | 0.6 | 0.24
1.1.54 | | 6.05 | 13.7 | 28 | 0.85 | 0.2
1.1.49 | | 5.83 | 14.73 | 27 | 0.6 | 0.13
1.1.7 | | 5.62 | 12.19 | 26 | 0.85 | 0.22
1.1.47 | | 5.4 | 12.76 | 25 | 0 | 0
7T0W_P-w3.pdb #2 contains residue insertion codes; KVFinder may not work
correctly
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in __init__
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in <listcomp>
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute '_c_pointer'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 136, in find_cavities
run(self.session, cmd)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\cmd.py", line 64, in cmd_kvfinder
processed_res_info[cav_id] = Residues([s.find_residue(cid, int(pos))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 1249, in __init__
Collection.__init__(self, residue_pointers, molobject.Residue)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
ValueError: Collection items of unrecognized type "<class 'list'>"
ValueError: Collection items of unrecognized type ""
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
See log for complete Python traceback.
> kvfinder
7T0W_P-w3 (1).pdb #!1 contains residue insertion codes; KVFinder may not work
correctly
124 cavities found for 7T0W_P-w3 (1).pdb #1
7T0W_P-w3 (1).pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.25 | | 870.26 | 772.29 | 4029 | 14.01 | 4.35
1.1.10 | | 529.63 | 457.59 | 2452 | 14.17 | 6.84
1.1.106 | | 402.62 | 314.45 | 1864 | 6.63 | 2.55
1.1.40 | | 230.69 | 284.38 | 1068 | 12.44 | 6.09
1.1.32 | | 147.74 | 163.12 | 684 | 5.91 | 2.26
1.1.112 | | 141.48 | 163.47 | 655 | 4.53 | 1.47
1.1.53 | | 137.59 | 172.66 | 637 | 12.15 | 6.2
1.1.67 | | 136.73 | 152.62 | 633 | 6.63 | 2.63
1.1.73 | | 123.77 | 151.34 | 573 | 0 | 0
1.1.51 | | 120.31 | 138.14 | 557 | 5.37 | 1.48
1.1.69 | | 117.07 | 129.96 | 542 | 0 | 0
1.1.15 | | 103.03 | 123.51 | 477 | 0 | 0
1.1.36 | | 100.66 | 128.15 | 466 | 2.81 | 0.83
1.1.123 | | 92.45 | 106.15 | 428 | 0 | 0
1.1.30 | | 89.42 | 104.47 | 414 | 3.23 | 0.82
1.1.3 | | 88.78 | 98.35 | 411 | 0 | 0
1.1.93 | | 88.34 | 104.19 | 409 | 6.95 | 3.38
1.1.99 | | 82.94 | 95.24 | 384 | 4.95 | 1.93
1.1.19 | | 81.86 | 101.58 | 379 | 3 | 1.17
1.1.37 | | 75.82 | 104.12 | 351 | 7.68 | 4.33
1.1.12 | | 73.44 | 113.93 | 340 | 0 | 0
1.1.91 | | 70.63 | 84.64 | 327 | 4.72 | 1.73
1.1.118 | | 69.55 | 71.51 | 322 | 3.45 | 1.21
1.1.76 | | 64.8 | 74.87 | 300 | 4.02 | 1.28
1.1.86 | | 57.46 | 111.3 | 266 | 0 | 0
1.1.8 | | 53.35 | 72 | 247 | 0 | 0
1.1.34 | | 51.19 | 74.11 | 237 | 0 | 0
1.1.109 | | 48.82 | 74.87 | 226 | 0 | 0
1.1.28 | | 48.6 | 87.05 | 225 | 0 | 0
1.1.39 | | 48.6 | 68.81 | 225 | 0 | 0
1.1.79 | | 46.22 | 72.79 | 214 | 0 | 0
1.1.57 | | 40.61 | 75.81 | 188 | 0 | 0
1.1.2 | | 40.18 | 55.32 | 186 | 0 | 0
1.1.63 | | 39.53 | 58.33 | 183 | 1.2 | 0.36
1.1.55 | | 39.1 | 51.91 | 181 | 1.8 | 0.45
1.1.26 | | 37.8 | 57.66 | 175 | 0 | 0
1.1.120 | | 37.15 | 47.18 | 172 | 2.4 | 0.58
1.1.115 | | 35.42 | 49.45 | 164 | 0 | 0
1.1.87 | | 34.56 | 53.61 | 160 | 0 | 0
1.1.90 | | 34.13 | 52.76 | 158 | 0 | 0
1.1.59 | | 31.1 | 46.41 | 144 | 1.7 | 0.45
1.1.38 | | 29.81 | 46.31 | 138 | 0 | 0
1.1.35 | | 27 | 52.68 | 125 | 0 | 0
1.1.111 | | 27 | 52.68 | 125 | 0 | 0
1.1.75 | | 26.78 | 42.97 | 124 | 2.24 | 0.78
1.1.113 | | 26.78 | 45.38 | 124 | 0 | 0
1.1.116 | | 26.78 | 48.36 | 124 | 0 | 0
1.1.1 | | 26.57 | 49.4 | 123 | 3.98 | 2.32
1.1.68 | | 26.14 | 39.02 | 121 | 3 | 1.27
1.1.64 | | 25.92 | 44.39 | 120 | 0 | 0
1.1.124 | | 25.92 | 43.97 | 120 | 0 | 0
1.1.16 | | 25.7 | 45.26 | 119 | 0 | 0
1.1.103 | | 24.19 | 43.56 | 112 | 0 | 0
1.1.121 | | 23.98 | 33.46 | 111 | 1.34 | 0.45
1.1.18 | | 23.54 | 35.91 | 109 | 2.81 | 1.17
1.1.17 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.52 | | 22.46 | 35.92 | 104 | 2.68 | 1.24
1.1.105 | | 22.25 | 43.82 | 103 | 0 | 0
1.1.78 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.98 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.48 | | 21.38 | 45.52 | 99 | 3.23 | 1.61
1.1.71 | | 21.38 | 35.33 | 99 | 2.08 | 0.86
1.1.65 | | 21.17 | 39.07 | 98 | 0 | 0
1.1.33 | | 20.74 | 41.19 | 96 | 0 | 0
1.1.97 | | 20.3 | 30.83 | 94 | 1.8 | 0.67
1.1.45 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.95 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.100 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.31 | | 19.22 | 30.34 | 89 | 1.34 | 0.48
1.1.104 | | 18.36 | 30.09 | 85 | 1.34 | 0.32
1.1.50 | | 17.93 | 31.13 | 83 | 1.47 | 0.63
1.1.6 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.66 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.70 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.108 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.22 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.46 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.117 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.119 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.56 | | 16.42 | 30.38 | 76 | 2.55 | 1.38
1.1.110 | | 16.42 | 26.07 | 76 | 1.34 | 0.42
1.1.80 | | 15.12 | 25.91 | 70 | 2.16 | 0.78
1.1.81 | | 14.9 | 27.16 | 69 | 1.34 | 0.45
1.1.84 | | 13.39 | 22.07 | 62 | 0.85 | 0.28
1.1.102 | | 12.74 | 24.96 | 59 | 1.2 | 0.36
1.1.11 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.13 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.20 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.21 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.23 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.24 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.27 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.29 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.41 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.44 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.62 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.72 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.74 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.77 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.82 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.83 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.85 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.88 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.94 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.96 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.107 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.114 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.58 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.9 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.1.60 | | 11.45 | 26.34 | 53 | 1.9 | 0.97
1.1.92 | | 11.45 | 19.26 | 53 | 1.2 | 0.37
1.1.42 | | 8.64 | 18.34 | 40 | 1.2 | 0.4
1.1.61 | | 8.21 | 15.96 | 38 | 1.2 | 0.34
1.1.122 | | 7.99 | 17.28 | 37 | 0.85 | 0.23
1.1.89 | | 7.78 | 15.29 | 36 | 0.85 | 0.19
1.1.101 | | 7.78 | 15.19 | 36 | 1.2 | 0.29
1.1.4 | | 6.7 | 14.94 | 31 | 0.85 | 0.25
1.1.43 | | 6.05 | 11.62 | 28 | 0.6 | 0.24
1.1.54 | | 6.05 | 13.7 | 28 | 0.85 | 0.2
1.1.49 | | 5.83 | 14.73 | 27 | 0.6 | 0.13
1.1.7 | | 5.62 | 12.19 | 26 | 0.85 | 0.22
1.1.47 | | 5.4 | 12.76 | 25 | 0 | 0
7T0W_P-w3.pdb #2 contains residue insertion codes; KVFinder may not work
correctly
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in __init__
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in <listcomp>
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute '_c_pointer'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 136, in find_cavities
run(self.session, cmd)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\cmd.py", line 64, in cmd_kvfinder
processed_res_info[cav_id] = Residues([s.find_residue(cid, int(pos))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 1249, in __init__
Collection.__init__(self, residue_pointers, molobject.Residue)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
ValueError: Collection items of unrecognized type "<class 'list'>"
ValueError: Collection items of unrecognized type ""
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
See log for complete Python traceback.
> kvfinder
7T0W_P-w3 (1).pdb #!1 contains residue insertion codes; KVFinder may not work
correctly
124 cavities found for 7T0W_P-w3 (1).pdb #1
7T0W_P-w3 (1).pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.25 | | 870.26 | 772.29 | 4029 | 14.01 | 4.35
1.1.10 | | 529.63 | 457.59 | 2452 | 14.17 | 6.84
1.1.106 | | 402.62 | 314.45 | 1864 | 6.63 | 2.55
1.1.40 | | 230.69 | 284.38 | 1068 | 12.44 | 6.09
1.1.32 | | 147.74 | 163.12 | 684 | 5.91 | 2.26
1.1.112 | | 141.48 | 163.47 | 655 | 4.53 | 1.47
1.1.53 | | 137.59 | 172.66 | 637 | 12.15 | 6.2
1.1.67 | | 136.73 | 152.62 | 633 | 6.63 | 2.63
1.1.73 | | 123.77 | 151.34 | 573 | 0 | 0
1.1.51 | | 120.31 | 138.14 | 557 | 5.37 | 1.48
1.1.69 | | 117.07 | 129.96 | 542 | 0 | 0
1.1.15 | | 103.03 | 123.51 | 477 | 0 | 0
1.1.36 | | 100.66 | 128.15 | 466 | 2.81 | 0.83
1.1.123 | | 92.45 | 106.15 | 428 | 0 | 0
1.1.30 | | 89.42 | 104.47 | 414 | 3.23 | 0.82
1.1.3 | | 88.78 | 98.35 | 411 | 0 | 0
1.1.93 | | 88.34 | 104.19 | 409 | 6.95 | 3.38
1.1.99 | | 82.94 | 95.24 | 384 | 4.95 | 1.93
1.1.19 | | 81.86 | 101.58 | 379 | 3 | 1.17
1.1.37 | | 75.82 | 104.12 | 351 | 7.68 | 4.33
1.1.12 | | 73.44 | 113.93 | 340 | 0 | 0
1.1.91 | | 70.63 | 84.64 | 327 | 4.72 | 1.73
1.1.118 | | 69.55 | 71.51 | 322 | 3.45 | 1.21
1.1.76 | | 64.8 | 74.87 | 300 | 4.02 | 1.28
1.1.86 | | 57.46 | 111.3 | 266 | 0 | 0
1.1.8 | | 53.35 | 72 | 247 | 0 | 0
1.1.34 | | 51.19 | 74.11 | 237 | 0 | 0
1.1.109 | | 48.82 | 74.87 | 226 | 0 | 0
1.1.28 | | 48.6 | 87.05 | 225 | 0 | 0
1.1.39 | | 48.6 | 68.81 | 225 | 0 | 0
1.1.79 | | 46.22 | 72.79 | 214 | 0 | 0
1.1.57 | | 40.61 | 75.81 | 188 | 0 | 0
1.1.2 | | 40.18 | 55.32 | 186 | 0 | 0
1.1.63 | | 39.53 | 58.33 | 183 | 1.2 | 0.36
1.1.55 | | 39.1 | 51.91 | 181 | 1.8 | 0.45
1.1.26 | | 37.8 | 57.66 | 175 | 0 | 0
1.1.120 | | 37.15 | 47.18 | 172 | 2.4 | 0.58
1.1.115 | | 35.42 | 49.45 | 164 | 0 | 0
1.1.87 | | 34.56 | 53.61 | 160 | 0 | 0
1.1.90 | | 34.13 | 52.76 | 158 | 0 | 0
1.1.59 | | 31.1 | 46.41 | 144 | 1.7 | 0.45
1.1.38 | | 29.81 | 46.31 | 138 | 0 | 0
1.1.35 | | 27 | 52.68 | 125 | 0 | 0
1.1.111 | | 27 | 52.68 | 125 | 0 | 0
1.1.75 | | 26.78 | 42.97 | 124 | 2.24 | 0.78
1.1.113 | | 26.78 | 45.38 | 124 | 0 | 0
1.1.116 | | 26.78 | 48.36 | 124 | 0 | 0
1.1.1 | | 26.57 | 49.4 | 123 | 3.98 | 2.32
1.1.68 | | 26.14 | 39.02 | 121 | 3 | 1.27
1.1.64 | | 25.92 | 44.39 | 120 | 0 | 0
1.1.124 | | 25.92 | 43.97 | 120 | 0 | 0
1.1.16 | | 25.7 | 45.26 | 119 | 0 | 0
1.1.103 | | 24.19 | 43.56 | 112 | 0 | 0
1.1.121 | | 23.98 | 33.46 | 111 | 1.34 | 0.45
1.1.18 | | 23.54 | 35.91 | 109 | 2.81 | 1.17
1.1.17 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.52 | | 22.46 | 35.92 | 104 | 2.68 | 1.24
1.1.105 | | 22.25 | 43.82 | 103 | 0 | 0
1.1.78 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.98 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.48 | | 21.38 | 45.52 | 99 | 3.23 | 1.61
1.1.71 | | 21.38 | 35.33 | 99 | 2.08 | 0.86
1.1.65 | | 21.17 | 39.07 | 98 | 0 | 0
1.1.33 | | 20.74 | 41.19 | 96 | 0 | 0
1.1.97 | | 20.3 | 30.83 | 94 | 1.8 | 0.67
1.1.45 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.95 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.100 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.31 | | 19.22 | 30.34 | 89 | 1.34 | 0.48
1.1.104 | | 18.36 | 30.09 | 85 | 1.34 | 0.32
1.1.50 | | 17.93 | 31.13 | 83 | 1.47 | 0.63
1.1.6 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.66 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.70 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.108 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.22 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.46 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.117 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.119 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.56 | | 16.42 | 30.38 | 76 | 2.55 | 1.38
1.1.110 | | 16.42 | 26.07 | 76 | 1.34 | 0.42
1.1.80 | | 15.12 | 25.91 | 70 | 2.16 | 0.78
1.1.81 | | 14.9 | 27.16 | 69 | 1.34 | 0.45
1.1.84 | | 13.39 | 22.07 | 62 | 0.85 | 0.28
1.1.102 | | 12.74 | 24.96 | 59 | 1.2 | 0.36
1.1.11 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.13 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.20 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.21 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.23 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.24 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.27 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.29 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.41 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.44 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.62 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.72 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.74 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.77 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.82 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.83 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.85 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.88 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.94 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.96 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.107 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.114 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.58 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.9 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.1.60 | | 11.45 | 26.34 | 53 | 1.9 | 0.97
1.1.92 | | 11.45 | 19.26 | 53 | 1.2 | 0.37
1.1.42 | | 8.64 | 18.34 | 40 | 1.2 | 0.4
1.1.61 | | 8.21 | 15.96 | 38 | 1.2 | 0.34
1.1.122 | | 7.99 | 17.28 | 37 | 0.85 | 0.23
1.1.89 | | 7.78 | 15.29 | 36 | 0.85 | 0.19
1.1.101 | | 7.78 | 15.19 | 36 | 1.2 | 0.29
1.1.4 | | 6.7 | 14.94 | 31 | 0.85 | 0.25
1.1.43 | | 6.05 | 11.62 | 28 | 0.6 | 0.24
1.1.54 | | 6.05 | 13.7 | 28 | 0.85 | 0.2
1.1.49 | | 5.83 | 14.73 | 27 | 0.6 | 0.13
1.1.7 | | 5.62 | 12.19 | 26 | 0.85 | 0.22
1.1.47 | | 5.4 | 12.76 | 25 | 0 | 0
7T0W_P-w3.pdb #2 contains residue insertion codes; KVFinder may not work
correctly
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in __init__
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in <listcomp>
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute '_c_pointer'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 136, in find_cavities
run(self.session, cmd)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\cmd.py", line 64, in cmd_kvfinder
processed_res_info[cav_id] = Residues([s.find_residue(cid, int(pos))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 1249, in __init__
Collection.__init__(self, residue_pointers, molobject.Residue)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
ValueError: Collection items of unrecognized type "<class 'list'>"
ValueError: Collection items of unrecognized type ""
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
See log for complete Python traceback.
> kvfinder
7T0W_P-w3 (1).pdb #!1 contains residue insertion codes; KVFinder may not work
correctly
124 cavities found for 7T0W_P-w3 (1).pdb #1
7T0W_P-w3 (1).pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.25 | | 870.26 | 772.29 | 4029 | 14.01 | 4.35
1.1.10 | | 529.63 | 457.59 | 2452 | 14.17 | 6.84
1.1.106 | | 402.62 | 314.45 | 1864 | 6.63 | 2.55
1.1.40 | | 230.69 | 284.38 | 1068 | 12.44 | 6.09
1.1.32 | | 147.74 | 163.12 | 684 | 5.91 | 2.26
1.1.112 | | 141.48 | 163.47 | 655 | 4.53 | 1.47
1.1.53 | | 137.59 | 172.66 | 637 | 12.15 | 6.2
1.1.67 | | 136.73 | 152.62 | 633 | 6.63 | 2.63
1.1.73 | | 123.77 | 151.34 | 573 | 0 | 0
1.1.51 | | 120.31 | 138.14 | 557 | 5.37 | 1.48
1.1.69 | | 117.07 | 129.96 | 542 | 0 | 0
1.1.15 | | 103.03 | 123.51 | 477 | 0 | 0
1.1.36 | | 100.66 | 128.15 | 466 | 2.81 | 0.83
1.1.123 | | 92.45 | 106.15 | 428 | 0 | 0
1.1.30 | | 89.42 | 104.47 | 414 | 3.23 | 0.82
1.1.3 | | 88.78 | 98.35 | 411 | 0 | 0
1.1.93 | | 88.34 | 104.19 | 409 | 6.95 | 3.38
1.1.99 | | 82.94 | 95.24 | 384 | 4.95 | 1.93
1.1.19 | | 81.86 | 101.58 | 379 | 3 | 1.17
1.1.37 | | 75.82 | 104.12 | 351 | 7.68 | 4.33
1.1.12 | | 73.44 | 113.93 | 340 | 0 | 0
1.1.91 | | 70.63 | 84.64 | 327 | 4.72 | 1.73
1.1.118 | | 69.55 | 71.51 | 322 | 3.45 | 1.21
1.1.76 | | 64.8 | 74.87 | 300 | 4.02 | 1.28
1.1.86 | | 57.46 | 111.3 | 266 | 0 | 0
1.1.8 | | 53.35 | 72 | 247 | 0 | 0
1.1.34 | | 51.19 | 74.11 | 237 | 0 | 0
1.1.109 | | 48.82 | 74.87 | 226 | 0 | 0
1.1.28 | | 48.6 | 87.05 | 225 | 0 | 0
1.1.39 | | 48.6 | 68.81 | 225 | 0 | 0
1.1.79 | | 46.22 | 72.79 | 214 | 0 | 0
1.1.57 | | 40.61 | 75.81 | 188 | 0 | 0
1.1.2 | | 40.18 | 55.32 | 186 | 0 | 0
1.1.63 | | 39.53 | 58.33 | 183 | 1.2 | 0.36
1.1.55 | | 39.1 | 51.91 | 181 | 1.8 | 0.45
1.1.26 | | 37.8 | 57.66 | 175 | 0 | 0
1.1.120 | | 37.15 | 47.18 | 172 | 2.4 | 0.58
1.1.115 | | 35.42 | 49.45 | 164 | 0 | 0
1.1.87 | | 34.56 | 53.61 | 160 | 0 | 0
1.1.90 | | 34.13 | 52.76 | 158 | 0 | 0
1.1.59 | | 31.1 | 46.41 | 144 | 1.7 | 0.45
1.1.38 | | 29.81 | 46.31 | 138 | 0 | 0
1.1.35 | | 27 | 52.68 | 125 | 0 | 0
1.1.111 | | 27 | 52.68 | 125 | 0 | 0
1.1.75 | | 26.78 | 42.97 | 124 | 2.24 | 0.78
1.1.113 | | 26.78 | 45.38 | 124 | 0 | 0
1.1.116 | | 26.78 | 48.36 | 124 | 0 | 0
1.1.1 | | 26.57 | 49.4 | 123 | 3.98 | 2.32
1.1.68 | | 26.14 | 39.02 | 121 | 3 | 1.27
1.1.64 | | 25.92 | 44.39 | 120 | 0 | 0
1.1.124 | | 25.92 | 43.97 | 120 | 0 | 0
1.1.16 | | 25.7 | 45.26 | 119 | 0 | 0
1.1.103 | | 24.19 | 43.56 | 112 | 0 | 0
1.1.121 | | 23.98 | 33.46 | 111 | 1.34 | 0.45
1.1.18 | | 23.54 | 35.91 | 109 | 2.81 | 1.17
1.1.17 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.52 | | 22.46 | 35.92 | 104 | 2.68 | 1.24
1.1.105 | | 22.25 | 43.82 | 103 | 0 | 0
1.1.78 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.98 | | 21.82 | 40.63 | 101 | 0 | 0
1.1.48 | | 21.38 | 45.52 | 99 | 3.23 | 1.61
1.1.71 | | 21.38 | 35.33 | 99 | 2.08 | 0.86
1.1.65 | | 21.17 | 39.07 | 98 | 0 | 0
1.1.33 | | 20.74 | 41.19 | 96 | 0 | 0
1.1.97 | | 20.3 | 30.83 | 94 | 1.8 | 0.67
1.1.45 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.95 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.100 | | 19.87 | 36.19 | 92 | 0 | 0
1.1.31 | | 19.22 | 30.34 | 89 | 1.34 | 0.48
1.1.104 | | 18.36 | 30.09 | 85 | 1.34 | 0.32
1.1.50 | | 17.93 | 31.13 | 83 | 1.47 | 0.63
1.1.6 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.66 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.70 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.108 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.22 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.46 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.117 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.119 | | 16.85 | 32.3 | 78 | 0 | 0
1.1.56 | | 16.42 | 30.38 | 76 | 2.55 | 1.38
1.1.110 | | 16.42 | 26.07 | 76 | 1.34 | 0.42
1.1.80 | | 15.12 | 25.91 | 70 | 2.16 | 0.78
1.1.81 | | 14.9 | 27.16 | 69 | 1.34 | 0.45
1.1.84 | | 13.39 | 22.07 | 62 | 0.85 | 0.28
1.1.102 | | 12.74 | 24.96 | 59 | 1.2 | 0.36
1.1.11 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.13 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.20 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.21 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.23 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.24 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.27 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.29 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.41 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.44 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.62 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.72 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.74 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.77 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.82 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.83 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.85 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.88 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.94 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.96 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.107 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.114 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.58 | | 12.1 | 28.58 | 56 | 2.16 | 1.25
1.1.9 | | 11.88 | 27.62 | 55 | 2.16 | 1.18
1.1.60 | | 11.45 | 26.34 | 53 | 1.9 | 0.97
1.1.92 | | 11.45 | 19.26 | 53 | 1.2 | 0.37
1.1.42 | | 8.64 | 18.34 | 40 | 1.2 | 0.4
1.1.61 | | 8.21 | 15.96 | 38 | 1.2 | 0.34
1.1.122 | | 7.99 | 17.28 | 37 | 0.85 | 0.23
1.1.89 | | 7.78 | 15.29 | 36 | 0.85 | 0.19
1.1.101 | | 7.78 | 15.19 | 36 | 1.2 | 0.29
1.1.4 | | 6.7 | 14.94 | 31 | 0.85 | 0.25
1.1.43 | | 6.05 | 11.62 | 28 | 0.6 | 0.24
1.1.54 | | 6.05 | 13.7 | 28 | 0.85 | 0.2
1.1.49 | | 5.83 | 14.73 | 27 | 0.6 | 0.13
1.1.7 | | 5.62 | 12.19 | 26 | 0.85 | 0.22
1.1.47 | | 5.4 | 12.76 | 25 | 0 | 0
7T0W_P-w3.pdb #2 contains residue insertion codes; KVFinder may not work
correctly
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in __init__
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 124, in <listcomp>
pointers = numpy.array([i._c_pointer.value for i in items], cptr)
^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute '_c_pointer'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 136, in find_cavities
run(self.session, cmd)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\cmd.py", line 64, in cmd_kvfinder
processed_res_info[cav_id] = Residues([s.find_residue(cid, int(pos))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 1249, in __init__
Collection.__init__(self, residue_pointers, molobject.Residue)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
ValueError: Collection items of unrecognized type "<class 'list'>"
ValueError: Collection items of unrecognized type ""
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\molarray.py", line 129, in __init__
raise ValueError('Collection items of unrecognized type "%s"' % t)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
[deleted to fit within ticket limits]
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 34, in data
val = col.display_value(item)
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 886, in display_value
val = self.value(instance)
^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\widgets\item_table.py", line 903, in value
return self.data_fetch(instance)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 201, in color_func
if s.display and s.atoms.displays.any():
^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\atomic\structure.py", line 529, in _get_display
return Model.display.fget(self)
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 389, in get_display
return self._any_displayed_positions and len(self._positions) > 0
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 573.57
OpenGL renderer: NVIDIA GeForce RTX 4060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_GB.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: LENOVO
Model: 21FWS7NY00
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 34,016,272,384
MaxProcessMemory: 137,438,953,344
CPU: 20 13th Gen Intel(R) Core(TM) i7-13700H
OSLanguage: en-US
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.6.1
build: 1.2.2.post1
certifi: 2025.7.14
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.19
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.3
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.10.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.15
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.59.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.3.2
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
narwhals: 2.8.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 2.3.4
numpy: 1.26.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
plotly: 6.3.1
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
Pygments: 2.18.0
pyKVFinder: 0.8.3
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tomlkit: 0.13.3
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.1
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
Change History (2)
comment:1 by , 3 weeks ago
| Component: | Unassigned → Surface/Binding Analysis |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Find Cavities problem with insertion codes |
comment:2 by , 3 weeks ago
May not actually be due to insertion codes; 1igy has insertion codes and works.
Note:
See TracTickets
for help on using tickets.
Though standard 7T0W entry does not have such codes