![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 weeks ago
Closed 4 weeks ago
#19094 closed defect (nonchimerax)
Crash in swap_buffers
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.0.1-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x0000000200bb8800 (most recent call first):
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 561 in swap_buffers
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 166 in status
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 98 in _expose_event
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, PIL._imaging, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 50)
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{
"uptime" : 23000,
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac15,12",
"coalitionID" : 3846,
"osVersion" : {
"train" : "macOS 26.0.1",
"build" : "25A362",
"releaseType" : "User"
},
"captureTime" : "2025-10-10 09:05:39.1888 +0100",
"codeSigningMonitor" : 2,
"incident" : "5F6567D2-3F11-44AB-96AB-74E0E399788D",
"pid" : 46363,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-10-09 16:28:51.8852 +0100",
"procStartAbsTime" : 445767606142,
"procExitAbsTime" : 556997555298,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.10.0","CFBundleVersion":"1.10.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"A0DA18DB-F8BB-5B78-A1A5-BAFB4B1AD2F6","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "7189F4EA-9C5E-D810-C3FA-60E882E0E3C3",
"developerMode" : 1,
"bootProgressRegister" : "0x2f000000",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRFOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkQng\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "CF6CC5B5-CCC3-4E25-9077-768F5FB812E2",
"wakeTime" : 1,
"sleepWakeUUID" : "3EE85341-2113-4549-BFBF-6E7A430CD5D9",
"sip" : "enabled",
"vmRegionInfo" : "0xc00001600 is in 0x964000000-0xc61c00000; bytes after start: 11207185920 bytes before end: 1639967231\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_LARGE 5ad000000-5ae684000 [ 22.5M] rw-\/rwx SM=PRV \n GAP OF 0x3b597c000 BYTES\n---> commpage (reserved) 964000000-c61c00000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n MALLOC_SMALL c61c00000-c62000000 [ 4096K] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000002, 0x0000000c00001600","rawCodes":[2,51539613184],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x0000000c00001600"},
"termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":46363},
"vmregioninfo" : "0xc00001600 is in 0x964000000-0xc61c00000; bytes after start: 11207185920 bytes before end: 1639967231\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n MALLOC_LARGE 5ad000000-5ae684000 [ 22.5M] rw-\/rwx SM=PRV \n GAP OF 0x3b597c000 BYTES\n---> commpage (reserved) 964000000-c61c00000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n MALLOC_SMALL c61c00000-c62000000 [ 4096K] rw-\/rwx SM=PRV ",
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/gg565/Documents/Science/DNA_mimic_analysis/Structure_trmd_bfvd/C9DG64_trm.pdb
Chain information for C9DG64_trm.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> show surfaces
> select :ASP,GLU
188 atoms, 171 bonds, 22 residues, 1 model selected
> color sel red
> lighting soft
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> open /Users/gg565/Documents/Science/DNA/Structure/DNA_6o3t.pdb
Summary of feedback from opening
/Users/gg565/Documents/Science/DNA/Structure/DNA_6o3t.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 SER A 76 ALA A 88 1 13
Start residue of secondary structure not found: HELIX 2 2 LEU A 95 PHE A 106 1
12
Start residue of secondary structure not found: HELIX 3 3 PRO A 107 GLU A 111
1 5
Start residue of secondary structure not found: HELIX 4 4 LYS A 113 ASN A 127
1 15
Start residue of secondary structure not found: HELIX 5 5 SER B 76 ASN B 87 1
12
9 messages similar to the above omitted
DNA_6o3t.pdb title:
Structural basis of FOXC2 and DNA interactions [more info...]
Chain information for DNA_6o3t.pdb #2
---
Chain | Description
C | DNA (5'- D(*ap*ap*ap*TP*TP*GP*TP*TP*TP*ap*TP*ap*ap*ap*CP*ap*GP*CP*CP*CP*G)- 3')
D | DNA (5'- D(*TP*TP*CP*GP*GP*GP*CP*TP*GP*TP*TP*TP*ap*TP*ap*ap*ap*CP*ap*ap*T)- 3')
Computing secondary structure
> show sel surfaces
> select add #1
1258 atoms, 1285 bonds, 159 residues, 2 models selected
> select subtract #1
1 model selected
> select add #2
855 atoms, 958 bonds, 42 residues, 1 model selected
> show sel surfaces
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,30.051,0,1,0,-34.379,0,0,1,-69.121
> view matrix models #2,1,0,0,-0.92195,0,1,0,-64.44,0,0,1,-99.798
> view matrix models #2,1,0,0,-13.296,0,1,0,-35.932,0,0,1,-109.94
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.44895,-0.8624,0.23389,-10.444,-0.3269,0.08509,0.94122,-107.74,-0.83161,-0.49902,-0.24371,40.856
> view matrix models
> #2,0.40258,-0.8835,0.23949,-9.6851,-0.31262,0.1132,0.94311,-108.74,-0.86035,-0.45455,-0.23063,39.514
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.40258,-0.8835,0.23949,-19.488,-0.31262,0.1132,0.94311,-95.215,-0.86035,-0.45455,-0.23063,50.215
> view matrix models
> #2,0.40258,-0.8835,0.23949,-19.263,-0.31262,0.1132,0.94311,-85.104,-0.86035,-0.45455,-0.23063,50.596
> view matrix models
> #2,0.40258,-0.8835,0.23949,-16.74,-0.31262,0.1132,0.94311,-96.032,-0.86035,-0.45455,-0.23063,51.871
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.42903,-0.74865,0.50543,-44.289,0.19767,0.62379,0.75618,-96.52,-0.8814,-0.22452,0.41561,-16.481
> view matrix models
> #2,0.30143,-0.62891,0.71667,-66.828,-0.44315,0.57312,0.68932,-75.161,-0.84425,-0.52537,-0.10594,40.118
> view matrix models
> #2,0.23907,-0.31415,0.91878,-88.814,0.028677,0.94809,0.31671,-53.777,-0.97058,-0.049366,0.23567,0.92679
> view matrix models
> #2,0.33759,-0.16127,0.92738,-94.441,0.035364,0.98669,0.15871,-38.627,-0.94063,-0.020782,0.3388,-10.632
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.33759,-0.16127,0.92738,-96.217,0.035364,0.98669,0.15871,-38.102,-0.94063,-0.020782,0.3388,-10.955
> view matrix models
> #2,0.33759,-0.16127,0.92738,-96.467,0.035364,0.98669,0.15871,-37.828,-0.94063,-0.020782,0.3388,-10.56
> view matrix models
> #2,0.33759,-0.16127,0.92738,-96.518,0.035364,0.98669,0.15871,-37.352,-0.94063,-0.020782,0.3388,-11.685
> view matrix models
> #2,0.33759,-0.16127,0.92738,-97.932,0.035364,0.98669,0.15871,-32.568,-0.94063,-0.020782,0.3388,-14.218
> view matrix models
> #2,0.33759,-0.16127,0.92738,-97.993,0.035364,0.98669,0.15871,-35.834,-0.94063,-0.020782,0.3388,-12.138
> view matrix models
> #2,0.33759,-0.16127,0.92738,-96.904,0.035364,0.98669,0.15871,-38.521,-0.94063,-0.020782,0.3388,-11.677
> save
> /Users/gg565/Documents/Not_Science/On_Going_Work/image_DMP/Zernike_vs_Fingerprint/C9DG64_6o3t.png
> width 1344 height 880 supersample 3 transparentBackground true
> hide #!2 models
> save
> /Users/gg565/Documents/Not_Science/On_Going_Work/image_DMP/Zernike_vs_Fingerprint/C9DG64_recto.png
> width 1344 height 880 supersample 3 transparentBackground true
> save
> /Users/gg565/Documents/Not_Science/On_Going_Work/image_DMP/Zernike_vs_Fingerprint/C9DG64_verso.png
> width 1344 height 880 supersample 3 transparentBackground true
> hide #!1 surfaces
> save
> /Users/gg565/Documents/Not_Science/On_Going_Work/image_DMP/Zernike_vs_Fingerprint/C9DG64_cartoon.png
> width 1344 height 880 supersample 3
> save
> /Users/gg565/Documents/Not_Science/On_Going_Work/image_DMP/Zernike_vs_Fingerprint/C9DG64_cartoon.png
> width 1344 height 880 supersample 3 transparentBackground true
> close #1
> open
> /Users/gg565/Documents/Science/DNA_mimic_analysis/Structure_trmd_bfvd/A0A6J5NA78_trm.pdb
Chain information for A0A6J5NA78_trm.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> show #1 surfaces
> select :ASP,GLU
120 atoms, 108 bonds, 14 residues, 1 model selected
> color sel red
> close #1
> open
> /Users/gg565/Documents/Science/DNA_mimic_analysis/Structure_trmd_bfvd/A0A8S5STQ2_trm.pdb
Chain information for A0A8S5STQ2_trm.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: Z1G50006VB/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 13822.1.2
OS Loader Version: 13822.1.2
Software:
System Software Overview:
System Version: macOS 26.0.1 (25A362)
Kernel Version: Darwin 25.0.0
Time since boot: 1 day, 13 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2422H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 4 weeks ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in swap_buffers |
comment:2 by , 4 weeks ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
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Expose event of status line results in crash in OpenGL swap buffers in macOS 26 (Tahoe). I think I have only seen this on the new macOS 26 with multiple displays.