Opened 26 hours ago
Closed 17 hours ago
#19196 closed defect (can't reproduce)
Problem with Segger reading HDF5 with unusual path, and with non-functional segmentation cursor
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Zach Pearson | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.10.1 (2025-07-24)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "D:/SYJ/★tomograph/원재 친구분 수정해주심/P1_out3_tomo_invert.mrc"
Opened P1_out3_tomo_invert.mrc as #1, grid size 1024,1024,300, pixel
33.3,33.3,33.3, shown at step 1, values float32
> open "D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\open_command\dialog.py", line 339, in _qt_safe
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run
results = command.run(text, log=log, return_json=return_json)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 132, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3221, in run
result = ci.function(session, **kw_args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 215, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 526, in collated_open
return remember_data_format()
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\open_command\cmd.py", line 497, in remember_data_format
models, status = func(*func_args, **func_kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segger\\__init__.py", line 45, in open
return open_segmentation(session, path, file_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segger\segfile.py", line 116, in open_segmentation
seg = read_segmentation(session, path, open = False)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segger\segfile.py", line 282, in read_segmentation
f = tables.open_file(path)
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-packages\tables\file.py",
line 325, in open_file
return File(filename, mode, title, root_uep, filters, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-packages\tables\file.py",
line 811, in __init__
self._g_new(filename, mode, **params)
File "tables\\\hdf5extension.pyx", line 617, in
tables.hdf5extension.File._g_new
tables.exceptions.HDF5ExtError: HDF5 error back trace
File "D:\bld\hdf5_1733002084650\work\src\H5F.c", line 836, in H5Fopen
unable to synchronously open file
File "D:\bld\hdf5_1733002084650\work\src\H5F.c", line 796, in
H5F__open_api_common
unable to open file
File "D:\bld\hdf5_1733002084650\work\src\H5VLcallback.c", line 3863, in
H5VL_file_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5VLcallback.c", line 3675, in
H5VL__file_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5VLnative_file.c", line 128, in
H5VL__native_file_open
unable to open file
File "D:\bld\hdf5_1733002084650\work\src\H5Fint.c", line 1902, in H5F_open
unable to open file: name = 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg',
tent_flags = 0
File "D:\bld\hdf5_1733002084650\work\src\H5FD.c", line 768, in H5FD_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5FDsec2.c", line 325, in
H5FD__sec2_open
unable to open file: name = 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg', errno =
-1, error message = 'Unknown error', flags = 0, o_flags = 0
End of HDF5 error back trace
Unable to open/create file 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg'
tables.exceptions.HDF5ExtError: HDF5 error back trace
File "D:\bld\hdf5_1733002084650\work\src\H5F.c", line 836, in H5Fopen
unable to synchronously open file
File "D:\bld\hdf5_1733002084650\work\src\H5F.c", line 796, in
H5F__open_api_common
unable to open file
File "D:\bld\hdf5_1733002084650\work\src\H5VLcallback.c", line 3863, in
H5VL_file_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5VLcallback.c", line 3675, in
H5VL__file_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5VLnative_file.c", line 128, in
H5VL__native_file_open
unable to open file
File "D:\bld\hdf5_1733002084650\work\src\H5Fint.c", line 1902, in H5F_open
unable to open file: name = 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg',
tent_flags = 0
File "D:\bld\hdf5_1733002084650\work\src\H5FD.c", line 768, in H5FD_open
open failed
File "D:\bld\hdf5_1733002084650\work\src\H5FDsec2.c", line 325, in
H5FD__sec2_open
unable to open file: name = 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg', errno =
-1, error message = 'Unknown error', flags = 0, o_flags = 0
End of HDF5 error back trace
Unable to open/create file 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg'
File "tables\\\hdf5extension.pyx", line 617, in
tables.hdf5extension.File._g_new
See log for complete Python traceback.
> volume #1 level -5.024,0 level -0.1898,0.8 level -0,1
> volume #1 level -8.591,0 level -0.1898,0.8 level -0,1
> volume #1 level -8.591,0 level -0.9463,0.8 level -0,1
> volume #1 region 0,0,0,1023,1023,299 step 4
[Repeated 1 time(s)]
> volume #1 step 1
> volume #1 level -0.65
> ui tool show "Hide Dust"
> surface dust #1 size 100
> surface dust #1 size 300
[Repeated 1 time(s)]
> ui tool show "Map Filter"
> volume gaussian #1 sDev 20
Opened P1_out3_tomo_invert.mrc gaussian as #2, grid size 1024,1024,300, pixel
33.3,33.3,33.3, shown at step 1, values float32
> ui tool show Segmentations
Created segmentation sphere cursor with ID #3
Created segmentation sphere cursor with ID #4
Created segmentation sphere cursor with ID #5
> ui view fourup
QWindowsWindow::setGeometry: Unable to set geometry 1920x1231+0+23 (frame:
1936x1270-8-8) on QWidgetWindow/"MainWindowClassWindow" on "27B2". Resulting
geometry: 1920x1017+0+23 (frame: 1936x1056-8-8) margins: 8, 31, 8, 8 minimum
size: 1077x1231 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=0, y=0), mintrack=POINT(x=1093, y=1270)))
> hide #3 target m
> close #3
> close #4
> close #5
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "coronal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
RuntimeError: Tried to get the position of deleted drawing "sagittal
segmentation cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 659, in
_on_plane_viewer_enter_event
self.make_puck_visible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 933, in
make_puck_visible
self.segmentation_cursors[axis].display = True
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer enter":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1398, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=False)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1168, in
mousePressEvent
self.moveSegmentationPuck(x, y, record_seg=True)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1438, in
mouseMoveEvent
self.moveSegmentationPuck(x, y, record_seg=True)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\orthoplanes.py", line 1323, in
moveSegmentationPuck
old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\graphics\cylinder.py", line 77, in origin
return self.position.origin()
^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
RuntimeError: Tried to get the position of deleted drawing "axial segmentation
cursor"
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 503, in _drawing_get_position
raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
self.name)
See log for complete Python traceback.
> segmentations create #2
Opened segmentation 1 of P1_out3_tomo_invert.mrc gaussian as #3, grid size
1024,1024,300, pixel 33.3,33.3,33.3, shown at level 0.501, step 1, values
float64
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 662, in
_on_plane_viewer_leave_event
self.make_puck_invisible(axis)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\ui\segmentations.py", line 937, in
make_puck_invisible
self.segmentation_cursors[axis].display = False
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 266, in __setattr__
super(Drawing, self).__setattr__(key, value)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\models.py", line 345, in _set_display
Drawing.set_display(self, display)
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 392, in set_display
dp = self.display_positions
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
TypeError: object of type 'NoneType' has no len()
Error processing trigger "plane viewer leave":
TypeError: object of type 'NoneType' has no len()
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 406, in get_display_positions
dp = ones((len(self._positions),), bool)
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 560.94
OpenGL renderer: NVIDIA GeForce RTX 2060 SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: ko_KR.cp949
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Education (Build 19045)
Memory: 274,542,325,760
MaxProcessMemory: 137,438,953,344
CPU: 36 Intel(R) Core(TM) i9-10980XE CPU @ 3.00GHz
OSLanguage: ko-KR
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.6.1
build: 1.2.2.post1
certifi: 2025.7.14
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.19
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.3
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.10
contourpy: 1.3.2
coverage: 7.10.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.15
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.59.0
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.3.2
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 1.26.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pywin32: 310
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.1
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
WMI: 1.5.1
Change History (2)
comment:1 by , 18 hours ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Problem with Segger reading HDF5 with unusual path, and with non-functional segmentation cursor |
comment:2 by , 17 hours ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Not clear why it can't open this file. I think Windows would handle arbitrary unicode in file and directory names. "Unknown error" is not helpful.
unable to open file: name = 'D:/SYJ/★tomograph/원재 친구분 수정해주심/1-1.seg', errno =
-1, error message = 'Unknown error'