Sequence viewer: lambda needs *args

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.10.1 (2025-07-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> 9051

Unknown command: 9051  

> open 1crn

Summary of feedback from opening 1crn fetched from pdb  
---  
note | Fetching compressed mmCIF 1crn from http://files.rcsb.org/download/1crn.cif  
  
1crn title:  
Water structure of A hydrophobic protein At atomic resolution. Pentagon rings
of water molecules In crystals of crambin [more info...]  
  
Chain information for 1crn #1  
---  
Chain | Description | UniProt  
A | CRAMBIN | CRAM_CRAAB 1-46  
  

> movie record

> turn y 2 180

> wait 180

> movie encode C:\Users\Clases/Desktop\movie1.mp4

Movie saved to C:\Users\Clases/Desktop\movie1.mp4  
  

> select

327 atoms, 337 bonds, 46 residues, 1 model selected  

> color sel red

> style sel stick

Changed 327 atom styles  

> show sel atoms

> hide sel atoms

> show sel atoms

> hide sel atoms

> show sel atoms

> style sel ball

Changed 327 atom styles  

> hide sel atoms

> style sel sphere

Changed 327 atom styles  

> show sel atoms

> style sel stick

Changed 327 atom styles  

> style sel sphere

Changed 327 atom styles  

> nucleotides sel fill

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> show sel atoms

> nucleotides sel fill

> show sel atoms

> hide sel atoms

> preset apply publication 1

No preset name matches 'apply publication 1'  

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> style ribbon

Expected a keyword  

> style ribbon 1crn

Expected a keyword  

> style sel ball

Changed 327 atom styles  

> show sel atoms

> open COL

'COL' has no suffix  

> open col IV

'col' has no suffix  

> open COL4A

'COL4A' has no suffix  

> show sel atoms

> hide sel atoms

> style sel stick

Changed 327 atom styles  

> show sel atoms

> hide sel atoms

> show sel atoms

> open 1BKV

Summary of feedback from opening 1BKV fetched from pdb  
---  
notes | Fetching compressed mmCIF 1bkv from http://files.rcsb.org/download/1bkv.cif  
Fetching CCD ACY from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/Y/ACY/ACY.cif  
  
1bkv title:  
Collagen [more info...]  
  
Chain information for 1bkv #2  
---  
Chain | Description  
A B C | T3-785  
  
Non-standard residues in 1bkv #2  
---  
ACY — acetic acid  
  
Computing secondary structure  

> hide #1 models

> hide #2 atoms

> style #2 stick

Changed 692 atom styles  

> show #2 atoms

> open 1a3n

Summary of feedback from opening 1a3n fetched from pdb  
---  
notes | Fetching compressed mmCIF 1a3n from http://files.rcsb.org/download/1a3n.cif  
Fetching CCD HEM from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/M/HEM/HEM.cif  
  
1a3n title:  
Deoxy human hemoglobin [more info...]  
  
Chain information for 1a3n #3  
---  
Chain | Description | UniProt  
A C | HEMOGLOBIN (ALPHA CHAIN) | HBA_HUMAN 1-141  
B D | HEMOGLOBIN (BETA CHAIN) | HBB_HUMAN 1-146  
  
Non-standard residues in 1a3n #3  
---  
HEM — protoporphyrin IX containing Fe (HEME)  
  
4 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> hide #2 models

> select subtract #1

Nothing selected  
Drag select of 2 atoms, 11 residues, 3 bonds  
Drag select of 36 residues  

> select #3/A#3/C

2447 atoms, 2286 bonds, 10 pseudobonds, 507 residues, 2 models selected  

> color (#!3 & sel) orange red

> select #3/B#3/D

2546 atoms, 2384 bonds, 10 pseudobonds, 520 residues, 2 models selected  

> color (#!3 & sel) cyan

> select clear

> select #3/A

1235 atoms, 1143 bonds, 5 pseudobonds, 265 residues, 2 models selected  

> color (#!3 & sel) forest green

> select #3/B

1272 atoms, 1192 bonds, 5 pseudobonds, 259 residues, 2 models selected  

> color (#!3 & sel) magenta

> select :HEM

172 atoms, 184 bonds, 16 pseudobonds, 4 residues, 2 models selected  

> color (#!3 & sel) red

> distance #1:93@NE2 #1:HEM@FE

Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or
one or more measurable objects and one or more atoms, got 0 atoms and 0
measurable objects  

> select

6012 atoms, 5621 bonds, 20 pseudobonds, 1278 residues, 4 models selected  

> ui mousemode right distance

> select sequence 93@NE2

Nothing selected  

> select ::name="HIS"

382 atoms, 384 bonds, 38 residues, 1 model selected  

> distance #1:93@NE2 #1:HEM@FE

Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or
one or more measurable objects and one or more atoms, got 0 atoms and 0
measurable objects  

> select :HEM

172 atoms, 184 bonds, 16 pseudobonds, 4 residues, 2 models selected  

> ui mousemode right distance

[Repeated 1 time(s)]

> select :HEM

172 atoms, 184 bonds, 16 pseudobonds, 4 residues, 2 models selected  

> ui tool show Distances

> select ::name="HIS"

382 atoms, 384 bonds, 38 residues, 1 model selected  

> select #3/A:58@CE1

1 atom, 1 residue, 1 model selected  
Drag select of 35 atoms, 9 residues, 5 pseudobonds, 34 bonds  
Exactly two atoms must be selected!  

> select clear

Drag select of 10 atoms, 1 residues, 3 pseudobonds, 8 bonds  

> select clear

Drag select of 7 atoms, 1 residues, 3 pseudobonds, 7 bonds  
Exactly two atoms must be selected!  

> ui tool show Distances

> select clear

Drag select of 3 bonds  
Drag select of 1 atoms, 1 residues, 1 pseudobonds  
Exactly two atoms must be selected!  

> ui mousemode right distance

> select #3/A:142@NB

1 atom, 1 residue, 1 model selected  

> select #3/A:142@FE

1 atom, 1 residue, 1 model selected  
Drag select of 1 bonds  

> select clear

> distance #1:93@NE2 #1:HEM@FE

Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or
one or more measurable objects and one or more atoms, got 0 atoms and 0
measurable objects  

> select ::name="HIS"

382 atoms, 384 bonds, 38 residues, 1 model selected  
Exactly two atoms must be selected!  

> select sel :< 5

3121 atoms, 2981 bonds, 20 pseudobonds, 523 residues, 4 models selected  

> select clear

Drag select of 34 atoms, 11 residues, 5 pseudobonds, 37 bonds  

> select sel :< 5

550 atoms, 523 bonds, 5 pseudobonds, 89 residues, 3 models selected  

> select sel :< 5

1226 atoms, 1168 bonds, 5 pseudobonds, 222 residues, 4 models selected  

> select sel :< 5

2234 atoms, 2111 bonds, 9 pseudobonds, 432 residues, 4 models selected  

> select clear

All XYZ fields must have numbers!  
[Repeated 1 time(s)]No items chosen in table  

> select ::name="HIS"

382 atoms, 384 bonds, 38 residues, 1 model selected  
Exactly two atoms must be selected!  

> select ::name="HEM"

172 atoms, 184 bonds, 16 pseudobonds, 4 residues, 2 models selected  
Exactly two atoms must be selected!  
No distances to save!  

> ui mousemode right distance

Drag select of 93 atoms, 138 residues, 5 pseudobonds, 85 bonds  

> show sel atoms

[Repeated 1 time(s)]

> hide sel atoms

> show sel atoms

Drag select of 411 atoms, 93 residues, 5 pseudobonds, 345 bonds  

> open 1mbo

Fetching url http://files.rcsb.org/download/1mbo.cif failed:  
HTTP Error 502: Bad Gateway  

> open 1mbo

Fetching url http://files.rcsb.org/download/1mbo.cif failed:  
HTTP Error 502: Bad Gateway  

> open 2hhb

Summary of feedback from opening 2hhb fetched from pdb  
---  
notes | Fetching compressed mmCIF 2hhb from http://files.rcsb.org/download/2hhb.cif  
Fetching CCD PO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/PO4/PO4.cif  
  
2hhb title:  
The crystal structure of human deoxyhaemoglobin At 1.74 angstroms resolution
[more info...]  
  
Chain information for 2hhb #4  
---  
Chain | Description | UniProt  
A C | HEMOGLOBIN (DEOXY) (ALPHA CHAIN) | HBA_HUMAN 1-141  
B D | HEMOGLOBIN (DEOXY) (BETA CHAIN) | HBB_HUMAN 1-146  
  
Non-standard residues in 2hhb #4  
---  
HEM — protoporphyrin IX containing Fe (HEME)  
PO4 — phosphate ion  
  

> hide #!3 models

> hide #!4 atoms

> open 1mbo

Summary of feedback from opening 1mbo fetched from pdb  
---  
notes | Fetching compressed mmCIF 1mbo from http://files.rcsb.org/download/1mbo.cif  
Fetching CCD OXY from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/Y/OXY/OXY.cif  
Fetching CCD SO4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/SO4/SO4.cif  
  
1mbo title:  
Structure and refinement of oxymyoglobin at 1.6 angstroms resolution [more
info...]  
  
Chain information for 1mbo #5  
---  
Chain | Description | UniProt  
A | MYOGLOBIN | MYG_PHYCA 1-153  
  
Non-standard residues in 1mbo #5  
---  
HEM — protoporphyrin IX containing Fe (HEME)  
OXY — oxygen molecule  
SO4 — sulfate ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> hide #!4-5 atoms

> select clear

[Repeated 2 time(s)]

> ui tool show Matchmaker

[Repeated 2 time(s)]No reference and/or match structure/chain chosen  
[Repeated 13 time(s)]

> ui tool show Matchmaker

No reference and/or match structure/chain chosen  
[Repeated 5 time(s)]

> ui tool show Matchmaker

No reference and/or match structure/chain chosen  
[Repeated 1 time(s)]

> matchmaker #!4-5 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1crn, chain A (#1) with 2hhb, chain A (#4), sequence alignment
score = 15.9  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: 1crn #1/A, 2hhb #4/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 7 pruned atom pairs is 1.458 angstroms; (across all 40 pairs:
11.016)  
  
Matchmaker 1crn, chain A (#1) with 1mbo, chain A (#5), sequence alignment
score = 6.3  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: 1crn #1/A, 1mbo #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
RMSD between 4 pruned atom pairs is 1.272 angstroms; (across all 34 pairs:
12.468)  
  

> matchmaker #!4-5 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1crn, chain A (#1) with 2hhb, chain A (#4), sequence alignment
score = 15.9  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3: 1crn #1/A, 2hhb #4/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
RMSD between 7 pruned atom pairs is 1.458 angstroms; (across all 40 pairs:
11.016)  
  
Matchmaker 1crn, chain A (#1) with 1mbo, chain A (#5), sequence alignment
score = 6.3  
Alignment identifier is 4  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4  
Hiding conservation header for alignment 4  
Chains used in RMSD evaluation for alignment 4: 1crn #1/A, 1mbo #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4  
RMSD between 4 pruned atom pairs is 1.272 angstroms; (across all 34 pairs:
12.468)  
  

> matchmaker #!4-5 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1crn, chain A (#1) with 2hhb, chain A (#4), sequence alignment
score = 15.9  
Alignment identifier is 5  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5  
Hiding conservation header for alignment 5  
Chains used in RMSD evaluation for alignment 5: 1crn #1/A, 2hhb #4/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5  
RMSD between 7 pruned atom pairs is 1.458 angstroms; (across all 40 pairs:
11.016)  
  
Matchmaker 1crn, chain A (#1) with 1mbo, chain A (#5), sequence alignment
score = 6.3  
Alignment identifier is 6  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 6  
Hiding conservation header for alignment 6  
Chains used in RMSD evaluation for alignment 6: 1crn #1/A, 1mbo #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6  
RMSD between 4 pruned atom pairs is 1.272 angstroms; (across all 34 pairs:
12.468)  
  

QWindowsWindow::setGeometry: Unable to set geometry 1366x716+0+23 (frame:
1382x755-8-8) on QWidgetWindow/"MainWindowClassWindow" on "DELL E1914H".
Resulting geometry: 1366x705+0+23 (frame: 1382x744-8-8) margins: 8, 31, 8, 8
minimum size: 421x716 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0,
y=0), maxtrack=POINT(x=0, y=0), mintrack=POINT(x=437, y=755)))  

> select #1/A:23,27,41-45 #4/A:101,105,119-123

100 atoms, 98 bonds, 14 residues, 2 models selected  

> matchmaker #!4-5 to #3 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 1a3n, chain D (#3) with 2hhb, chain B (#4), sequence alignment
score = 778.9  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: 1a3n #3/D, 2hhb #4/B  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
RMSD between 145 pruned atom pairs is 0.277 angstroms; (across all 145 pairs:
0.277)  
  
Matchmaker 1a3n, chain B (#3) with 1mbo, chain A (#5), sequence alignment
score = 279.6  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3: 1a3n #3/B, 1mbo #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
RMSD between 115 pruned atom pairs is 1.089 angstroms; (across all 145 pairs:
1.677)  
  

> select #3/D:2-146 #4/B:2-146

2232 atoms, 2292 bonds, 290 residues, 2 models selected  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\seq_view\match.py", line 91, in <lambda>  
bbox.button(qbbox.Apply).clicked.connect(lambda f = self.match: f(apply=True))  
^^^^^^^^^^^^^  
TypeError: 'bool' object is not callable  
  
TypeError: 'bool' object is not callable  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\seq_view\match.py", line 91, in  
bbox.button(qbbox.Apply).clicked.connect(lambda f = self.match: f(apply=True))  
^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> select #3/B:2-18,23-24,26-42,48-54,58,60-77,85-119,122-137,144-145
> #5/A:1-17,24-25,27-43,49-55,59,61-78,86-120,123-138,145-146

1814 atoms, 1848 bonds, 230 residues, 2 models selected  




OpenGL version: 3.3.13521 Core Profile Forward-Compatible Context 24.20.11020.3002
OpenGL renderer: AMD Radeon R7 450
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: es_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: OptiPlex 7050
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,036,333,056
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700 CPU @ 3.60GHz
OSLanguage: es-MX

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.6.1
    build: 1.2.2.post1
    certifi: 2025.7.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.19
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.3
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.10.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.15
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.59.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.3.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.1
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1