An error occurred in drawing the scene

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.11.dev202510120519 (2025-10-12 05:19:18 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.11.dev202510120519 (2025-10-12)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "E:\data\HUH conjugation\figure\10HB-8064 draft 4-4-1-color for group
> 10ss(5).json\10HB-extesion-2.cxs" format session

Updated animation length to 0:05.00  
[Repeated 1 time(s)]Log from Mon Oct 20 11:22:24 2025UCSF ChimeraX version:
1.11.dev202510120519 (2025-10-12)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open "E:\data\HUH conjugation\figure\10HB-8064 draft 4-4-1-color for group
> 10ss(5).json\10HB-extesion.cxs" format session

Updated animation length to 0:05.00  
[Repeated 1 time(s)]Log from Sat Oct 18 20:44:33 2025 Startup Messages  
---  
warning | Unknown Vendor ID: 0x4d4f4351  
note | Updated animation length to 0:05.00  
  
UCSF ChimeraX version: 1.11.dev202510120519 (2025-10-12)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "E:/data/HUH conjugation/10HB-extension.dat.pdb"

Summary of feedback from opening E:/data/HUH conjugation/10HB-
extension.dat.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
ATOM 1 N9 DG5 A 1 -22.445 -18.110-1269.003 1.00 1.00  
  
Ignored bad PDB record found on line 2  
ATOM 2 C8 DG5 A 1 -23.487 -19.011-1269.003 1.00 1.00  
  
Ignored bad PDB record found on line 3  
ATOM 3 H8 DG5 A 1 -24.507 -18.657-1269.001 1.00 1.00  
  
Ignored bad PDB record found on line 4  
ATOM 4 N7 DG5 A 1 -23.106 -20.266-1269.002 1.00 1.00  
  
Ignored bad PDB record found on line 5  
ATOM 5 C5 DG5 A 1 -21.715 -20.190-1269.003 1.00 1.00  
  
24514 messages similar to the above omitted  
Duplicate atom serial number found: 513  
Duplicate atom serial number found: 514  
Duplicate atom serial number found: 515  
Duplicate atom serial number found: 516  
Duplicate atom serial number found: 517  
109519 messages similar to the above omitted  
Ignored bad PDB record found on line 234064  
ATOM 34045 N1 DT V6923 -14.768 22.278-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234065  
ATOM 34046 C6 DT V6923 -14.738 23.648-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234066  
ATOM 34047 H6 DT V6923 -13.792 24.166-1000.127 1.00 1.00  
  
Ignored bad PDB record found on line 234067  
ATOM 34048 C5 DT V6923 -15.870 24.370-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 234068  
ATOM 34049 C7 DT V6923 -15.848 25.870-1000.083 1.00 1.00  
  
2 messages similar to the above omitted  
Duplicate atom serial number found: 34052  
Ignored bad PDB record found on line 234072  
ATOM 34053 C4 DT V6923 -17.159 23.721-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234073  
ATOM 34054 O4 DT V6923 -18.250 24.298-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234074  
ATOM 34055 N3 DT V6923 -17.097 22.343-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234075  
ATOM 34056 H3 DT V6923 -18.046 21.807-1000.085 1.00 1.00  
  
Ignored bad PDB record found on line 234076  
ATOM 34057 C2 DT V6923 -15.948 21.575-1000.082 1.00 1.00  
  
1 messages similar to the above omitted  
Duplicate atom serial number found: 34059  
Duplicate atom serial number found: 34060  
Duplicate atom serial number found: 34061  
Duplicate atom serial number found: 34062  
Duplicate atom serial number found: 34063  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 234088  
ATOM 34069 C1' DT V6923 -13.507 21.486-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 234089  
ATOM 34070 H1' DT V6923 -13.830 20.509-1000.440 1.00 1.00  
  
Ignored bad PDB record found on line 234090  
ATOM 34071 C3' DT V6923 -11.150 21.754-1000.057 1.00 1.00  
  
Ignored bad PDB record found on line 234091  
ATOM 34072 H3' DT V6923 -10.353 22.475-1000.244 1.00 1.00  
  
Ignored bad PDB record found on line 234092  
ATOM 34073 C2' DT V6923 -12.379 22.128-1000.884 1.00 1.00  
  
5692 messages similar to the above omitted  
Duplicate atom serial number found: 39766  
Ignored bad PDB record found on line 239786  
ATOM 39767 C3' DC V7102 -41.022 4.592-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 39768  
Duplicate atom serial number found: 39769  
Duplicate atom serial number found: 39770  
Duplicate atom serial number found: 39771  
Duplicate atom serial number found: 39772  
17458 messages similar to the above omitted  
Ignored bad PDB record found on line 257250  
ATOM 57231 N9 DA V7651 -32.449 -8.267-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 257251  
ATOM 57232 C8 DA V7651 -32.994 -7.004-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 257252  
ATOM 57233 H8 DA V7651 -32.351 -6.138-1000.130 1.00 1.00  
  
Ignored bad PDB record found on line 257253  
ATOM 57234 N7 DA V7651 -34.292 -6.990-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 257254  
ATOM 57235 C5 DA V7651 -34.641 -8.334-1000.083 1.00 1.00  
  
9 messages similar to the above omitted  
Duplicate atom serial number found: 57245  
Duplicate atom serial number found: 57246  
Duplicate atom serial number found: 57247  
Duplicate atom serial number found: 57248  
Duplicate atom serial number found: 57249  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 257274  
ATOM 57255 C1' DA V7651 -31.014 -8.669-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 257275  
ATOM 57256 H1' DA V7651 -31.046 -9.692-1000.457 1.00 1.00  
  
Ignored bad PDB record found on line 257276  
ATOM 57257 C3' DA V7651 -28.830 -7.744-1000.057 1.00 1.00  
  
Ignored bad PDB record found on line 257277  
ATOM 57258 H3' DA V7651 -28.270 -6.827-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 257278  
ATOM 57259 C2' DA V7651 -30.115 -7.733-1000.884 1.00 1.00  
  
7768 messages similar to the above omitted  
Duplicate atom serial number found: 65028  
Duplicate atom serial number found: 65029  
Duplicate atom serial number found: 65030  
Duplicate atom serial number found: 65031  
Duplicate atom serial number found: 65032  
40348 messages similar to the above omitted  
Ignored bad PDB record found on line 305435  
ATOM 5382 N1 DC5 E 1 -39.305 -14.015-1172.723 1.00 1.00  
  
Ignored bad PDB record found on line 305436  
ATOM 5383 C6 DC5 E 1 -40.568 -13.512-1172.722 1.00 1.00  
  
Ignored bad PDB record found on line 305437  
ATOM 5384 H6 DC5 E 1 -41.414 -14.182-1172.722 1.00 1.00  
  
Ignored bad PDB record found on line 305438  
ATOM 5385 C5 DC5 E 1 -40.789 -12.173-1172.723 1.00 1.00  
  
Ignored bad PDB record found on line 305439  
ATOM 5386 H5 DC5 E 1 -41.809 -11.789-1172.723 1.00 1.00  
  
3458 messages similar to the above omitted  
Duplicate atom serial number found: 8845  
Ignored bad PDB record found on line 308901  
ATOM 8846 C3' DA G 25 -25.845 16.569-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 8847  
Duplicate atom serial number found: 8848  
Duplicate atom serial number found: 8849  
Duplicate atom serial number found: 8850  
Duplicate atom serial number found: 8851  
190 messages similar to the above omitted  
Ignored bad PDB record found on line 309097  
ATOM 9042 N9 DG G 32 4.989 13.753-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309098  
ATOM 9043 C8 DG G 32 4.374 14.985-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309099  
ATOM 9044 H8 DG G 32 4.969 15.886-1000.081 1.00 1.00  
  
Ignored bad PDB record found on line 309100  
ATOM 9045 N7 DG G 32 3.064 14.926-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 309101  
ATOM 9046 C5 DG G 32 2.793 13.559-1000.082 1.00 1.00  
  
10 messages similar to the above omitted  
Duplicate atom serial number found: 9057  
Duplicate atom serial number found: 9058  
Duplicate atom serial number found: 9059  
Duplicate atom serial number found: 9060  
Duplicate atom serial number found: 9061  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 309122  
ATOM 9067 C1' DG G 32 6.443 13.427-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309123  
ATOM 9068 H1' DG G 32 6.472 12.381-1000.391 1.00 1.00  
  
Ignored bad PDB record found on line 309124  
ATOM 9069 C3' DG G 32 8.576 14.464-1000.058 1.00 1.00  
  
Ignored bad PDB record found on line 309125  
ATOM 9070 H3' DG G 32 9.087 15.408-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 309126  
ATOM 9071 C2' DG G 32 7.292 14.408-1000.884 1.00 1.00  
  
218 messages similar to the above omitted  
Duplicate atom serial number found: 9290  
Ignored bad PDB record found on line 309346  
ATOM 9291 C3' DC G 39 -3.789 -16.871-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 9292  
Duplicate atom serial number found: 9293  
Duplicate atom serial number found: 9294  
Duplicate atom serial number found: 9295  
Duplicate atom serial number found: 9296  
195 messages similar to the above omitted  
Ignored bad PDB record found on line 309548  
ATOM 9492 N9 DG H 4 -32.632 13.753-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309549  
ATOM 9493 C8 DG H 4 -33.248 14.985-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309550  
ATOM 9494 H8 DG H 4 -32.652 15.886-1000.081 1.00 1.00  
  
Ignored bad PDB record found on line 309551  
ATOM 9495 N7 DG H 4 -34.558 14.926-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 309552  
ATOM 9496 C5 DG H 4 -34.828 13.559-1000.082 1.00 1.00  
  
10 messages similar to the above omitted  
Duplicate atom serial number found: 9507  
Duplicate atom serial number found: 9508  
Duplicate atom serial number found: 9509  
Duplicate atom serial number found: 9510  
Duplicate atom serial number found: 9511  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 309573  
ATOM 9517 C1' DG H 4 -31.179 13.427-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309574  
ATOM 9518 H1' DG H 4 -31.150 12.381-1000.391 1.00 1.00  
  
Ignored bad PDB record found on line 309575  
ATOM 9519 C3' DG H 4 -29.046 14.464-1000.058 1.00 1.00  
  
Ignored bad PDB record found on line 309576  
ATOM 9520 H3' DG H 4 -28.534 15.408-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 309577  
ATOM 9521 C2' DG H 4 -30.330 14.408-1000.884 1.00 1.00  
  
197 messages similar to the above omitted  
Duplicate atom serial number found: 9719  
Ignored bad PDB record found on line 309776  
ATOM 9720 2H7 DT H 11 -41.901 -9.582-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 309777  
ATOM 9721 3H7 DT H 11 -42.764 -10.859-1000.971 1.00 1.00  
  
Ignored bad PDB record found on line 309778  
ATOM 9722 C4 DT H 11 -39.661 -10.789-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309779  
ATOM 9723 O4 DT H 11 -39.512 -9.564-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 309780  
ATOM 9724 N3 DT H 11 -38.566 -11.627-1000.082 1.00 1.00  
  
14 messages similar to the above omitted  
Duplicate atom serial number found: 9739  
Ignored bad PDB record found on line 309796  
ATOM 9740 C3' DT H 11 -41.479 -16.845-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 9741  
Duplicate atom serial number found: 9742  
Duplicate atom serial number found: 9743  
Duplicate atom serial number found: 9744  
Duplicate atom serial number found: 9745  
189 messages similar to the above omitted  
Ignored bad PDB record found on line 309991  
ATOM 9935 N9 DG H 18 -13.830 -18.816-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309992  
ATOM 9936 C8 DG H 18 -14.449 -17.585-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 309993  
ATOM 9937 H8 DG H 18 -13.856 -16.682-1000.081 1.00 1.00  
  
Ignored bad PDB record found on line 309994  
ATOM 9938 N7 DG H 18 -15.759 -17.648-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 309995  
ATOM 9939 C5 DG H 18 -16.025 -19.015-1000.082 1.00 1.00  
  
10 messages similar to the above omitted  
Duplicate atom serial number found: 9950  
Duplicate atom serial number found: 9951  
Duplicate atom serial number found: 9952  
Duplicate atom serial number found: 9953  
Duplicate atom serial number found: 9954  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 310016  
ATOM 9960 C1' DG H 18 -12.376 -19.138-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 310017  
ATOM 9961 H1' DG H 18 -12.343 -20.183-1000.391 1.00 1.00  
  
Ignored bad PDB record found on line 310018  
ATOM 9962 C3' DG H 18 -10.245 -18.095-1000.058 1.00 1.00  
  
Ignored bad PDB record found on line 310019  
ATOM 9963 H3' DG H 18 -9.737 -17.150-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 310020  
ATOM 9964 C2' DG H 18 -11.529 -18.155-1000.884 1.00 1.00  
  
772 messages similar to the above omitted  
Duplicate atom serial number found: 10737  
Duplicate atom serial number found: 10738  
Duplicate atom serial number found: 10739  
Duplicate atom serial number found: 10740  
Duplicate atom serial number found: 10741  
35087 messages similar to the above omitted  
Ignored bad PDB record found on line 345914  
ATOM 45829 N1 DT5 K 1 -20.092 24.923-1219.202 1.00 1.00  
  
Ignored bad PDB record found on line 345915  
ATOM 45830 C6 DT5 K 1 -19.018 25.774-1219.203 1.00 1.00  
  
Ignored bad PDB record found on line 345916  
ATOM 45831 H6 DT5 K 1 -19.177 26.841-1219.158 1.00 1.00  
  
Ignored bad PDB record found on line 345917  
ATOM 45832 C5 DT5 K 1 -17.758 25.308-1219.203 1.00 1.00  
  
Ignored bad PDB record found on line 345918  
ATOM 45833 C7 DT5 K 1 -16.576 26.232-1219.202 1.00 1.00  
  
2659 messages similar to the above omitted  
Duplicate atom serial number found: 48493  
Duplicate atom serial number found: 48494  
Duplicate atom serial number found: 48495  
Duplicate atom serial number found: 48496  
Duplicate atom serial number found: 48497  
31457 messages similar to the above omitted  
Ignored bad PDB record found on line 380066  
ATOM 79955 N9 DG5 K 1 -3.634 14.471-1199.283 1.00 1.00  
  
Ignored bad PDB record found on line 380067  
ATOM 79956 C8 DG5 K 1 -4.676 13.570-1199.283 1.00 1.00  
  
Ignored bad PDB record found on line 380068  
ATOM 79957 H8 DG5 K 1 -5.696 13.924-1199.281 1.00 1.00  
  
Ignored bad PDB record found on line 380069  
ATOM 79958 N7 DG5 K 1 -4.295 12.315-1199.282 1.00 1.00  
  
Ignored bad PDB record found on line 380070  
ATOM 79959 C5 DG5 K 1 -2.904 12.391-1199.282 1.00 1.00  
  
2657 messages similar to the above omitted  
Duplicate atom serial number found: 82617  
Duplicate atom serial number found: 82618  
Duplicate atom serial number found: 82619  
Duplicate atom serial number found: 82620  
Duplicate atom serial number found: 82621  
20056 messages similar to the above omitted  
Ignored bad PDB record found on line 402807  
ATOM 2679 N1 DC5 C 1 41.717 -11.053-1195.963 1.00 1.00  
  
Ignored bad PDB record found on line 402808  
ATOM 2680 C6 DC5 C 1 41.978 -12.387-1195.962 1.00 1.00  
  
Ignored bad PDB record found on line 402809  
ATOM 2681 H6 DC5 C 1 43.001 -12.735-1195.962 1.00 1.00  
  
Ignored bad PDB record found on line 402810  
ATOM 2682 C5 DC5 C 1 40.973 -13.298-1195.963 1.00 1.00  
  
Ignored bad PDB record found on line 402811  
ATOM 2683 H5 DC5 C 1 41.203 -14.364-1195.963 1.00 1.00  
  
5294 messages similar to the above omitted  
Duplicate atom serial number found: 7978  
Duplicate atom serial number found: 7979  
Duplicate atom serial number found: 7980  
Duplicate atom serial number found: 7981  
Duplicate atom serial number found: 7982  
45351 messages similar to the above omitted  
Ignored bad PDB record found on line 453499  
ATOM 53334 N9 DA5 N 1 43.200 12.554-1245.763 1.00 1.00  
  
Ignored bad PDB record found on line 453500  
ATOM 53335 C8 DA5 N 1 42.890 13.895-1245.762 1.00 1.00  
  
Ignored bad PDB record found on line 453501  
ATOM 53336 H8 DA5 N 1 43.678 14.631-1245.810 1.00 1.00  
  
Ignored bad PDB record found on line 453502  
ATOM 53337 N7 DA5 N 1 41.616 14.140-1245.763 1.00 1.00  
  
Ignored bad PDB record found on line 453503  
ATOM 53338 C5 DA5 N 1 41.031 12.881-1245.763 1.00 1.00  
  
4126 messages similar to the above omitted  
Duplicate atom serial number found: 57465  
Ignored bad PDB record found on line 457634  
ATOM 57466 C3' DC Q 4 15.021 15.710-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 57467  
Duplicate atom serial number found: 57468  
Duplicate atom serial number found: 57469  
Duplicate atom serial number found: 57470  
Duplicate atom serial number found: 57471  
191 messages similar to the above omitted  
Ignored bad PDB record found on line 457831  
ATOM 57663 N1 DC Q 11 41.644 11.498-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 457832  
ATOM 57664 C6 DC Q 11 41.669 12.857-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 457833  
ATOM 57665 H6 DC Q 11 42.616 13.378-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 457834  
ATOM 57666 C5 DC Q 11 40.521 13.579-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 457835  
ATOM 57667 H5 DC Q 11 40.562 14.669-1000.082 1.00 1.00  
  
7 messages similar to the above omitted  
Duplicate atom serial number found: 57675  
Duplicate atom serial number found: 57676  
Duplicate atom serial number found: 57677  
Duplicate atom serial number found: 57678  
Duplicate atom serial number found: 57679  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 457853  
ATOM 57685 C1' DC Q 11 42.906 10.706-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 457854  
ATOM 57686 H1' DC Q 11 42.585 9.710-1000.389 1.00 1.00  
  
Ignored bad PDB record found on line 457855  
ATOM 57687 C3' DC Q 11 45.263 10.973-1000.057 1.00 1.00  
  
Ignored bad PDB record found on line 457856  
ATOM 57688 H3' DC Q 11 46.060 11.693-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 457857  
ATOM 57689 C2' DC Q 11 44.033 11.347-1000.884 1.00 1.00  
  
216 messages similar to the above omitted  
Duplicate atom serial number found: 57906  
Ignored bad PDB record found on line 458075  
ATOM 57907 C3' DC Q 18 33.421 -16.558-1000.108 1.00 1.00  
  
Duplicate atom serial number found: 57908  
Duplicate atom serial number found: 57909  
Duplicate atom serial number found: 57910  
Duplicate atom serial number found: 57911  
Duplicate atom serial number found: 57912  
636 messages similar to the above omitted  
Ignored bad PDB record found on line 458717  
ATOM 58549 N1 DC Q 39 22.838 -21.109-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 458718  
ATOM 58550 C6 DC Q 39 22.873 -19.750-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 458719  
ATOM 58551 H6 DC Q 39 23.823 -19.236-1000.083 1.00 1.00  
  
Ignored bad PDB record found on line 458720  
ATOM 58552 C5 DC Q 39 21.729 -19.020-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 458721  
ATOM 58553 H5 DC Q 39 21.778 -17.930-1000.082 1.00 1.00  
  
7 messages similar to the above omitted  
Duplicate atom serial number found: 58561  
Duplicate atom serial number found: 58562  
Duplicate atom serial number found: 58563  
Duplicate atom serial number found: 58564  
Duplicate atom serial number found: 58565  
5 messages similar to the above omitted  
Ignored bad PDB record found on line 458739  
ATOM 58571 C1' DC Q 39 24.094 -21.910-1000.082 1.00 1.00  
  
Ignored bad PDB record found on line 458740  
ATOM 58572 H1' DC Q 39 23.766 -22.903-1000.389 1.00 1.00  
  
Ignored bad PDB record found on line 458741  
ATOM 58573 C3' DC Q 39 26.453 -21.659-1000.057 1.00 1.00  
  
Ignored bad PDB record found on line 458742  
ATOM 58574 H3' DC Q 39 27.255 -20.944-1000.245 1.00 1.00  
  
Ignored bad PDB record found on line 458743  
ATOM 58575 C2' DC Q 39 25.226 -21.276-1000.884 1.00 1.00  
  
98 messages similar to the above omitted  
Duplicate atom serial number found: 58674  
Duplicate atom serial number found: 58675  
Duplicate atom serial number found: 58676  
Duplicate atom serial number found: 58677  
Duplicate atom serial number found: 58678  
49374 messages similar to the above omitted  
  
Chain information for 10HB-extension.dat.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
V | No description available  
W | No description available  
X | No description available  
Y | No description available  
Z | No description available  
  

> set bgColor white

> hide atoms

> show cartoons

Computing secondary structure  

> select all

450193 atoms, 485003 bonds, 7 pseudobonds, 14180 residues, 2 models selected  

> color sel orange

> select clear

Drag select of 41 residues  
Drag select of 12 residues  

> select clear

Drag select of 12 residues  

> color sel #ooff00

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color sel #00ff00

Drag select of 27 residues  

> color sel #00ff00

Drag select of 2 residues  

> color sel #00ff00

Drag select of 15 residues  

> select /V:2998

32 atoms, 33 bonds, 1 residue, 1 model selected  
Drag select of 12 residues  

> color sel #00ff00

Drag select of 10 residues  
Drag select of 17 residues  

> color sel #00ff00

Drag select of 5 residues  

> color sel #00ff00

Drag select of 23 residues  
Drag select of 17 residues  

> color sel #00ff00

Drag select of 10 residues  

> color sel #00ff00

Drag select of 4 residues  

> color sel #00ff00

> select /X:13

220 atoms, 229 bonds, 7 residues, 1 model selected  

> select /X:14

223 atoms, 234 bonds, 7 residues, 1 model selected  

> select add /X:13

443 atoms, 463 bonds, 14 residues, 1 model selected  

> color sel #00ff00

> select add /Y:11

665 atoms, 694 bonds, 21 residues, 1 model selected  

> select add /Y:12

888 atoms, 926 bonds, 28 residues, 1 model selected  

> color sel #00ff00

> select add /M:13

1110 atoms, 1157 bonds, 35 residues, 1 model selected  

> select add /M:14

1335 atoms, 1392 bonds, 42 residues, 1 model selected  

> color sel #00ff00

Drag select of 12 residues  

> select subtract /V:3884

1687 atoms, 1392 bonds, 53 residues, 1 model selected  

> select add /Q:1

1867 atoms, 1581 bonds, 59 residues, 1 model selected  

> select add /Q:2

2061 atoms, 1784 bonds, 65 residues, 1 model selected  

> select subtract /V:3883

2029 atoms, 1784 bonds, 64 residues, 1 model selected  
Drag select of 8 residues  
Drag select of 5 residues  
Drag select of 1 residues  
Drag select of 3 residues  

> select add /A:3

2573 atoms, 2055 bonds, 81 residues, 1 model selected  

> select subtract /A:3

2315 atoms, 1784 bonds, 73 residues, 1 model selected  

> color sel #00ff00

Drag select of 14 residues  

> color sel #00ff00

Drag select of 6 residues  

> color sel #00ff00

Drag select of 5 residues  

> color sel #00ff00

Drag select of 1 residues  

> color sel #00ff00

Drag select of 2 residues  

> color sel #00ff00

Drag select of 25 residues  

> color sel #00ff00

> select /E:14

160 atoms, 167 bonds, 5 residues, 1 model selected  

> color sel #00ff00

> select /L:13

188 atoms, 196 bonds, 6 residues, 1 model selected  

> color sel #00ff00

Drag select of 9 residues  

> color sel #00ff00

> select /Z:10

252 atoms, 263 bonds, 8 residues, 1 model selected  

> select /Z:11

254 atoms, 267 bonds, 8 residues, 1 model selected  
Drag select of 2 residues  

> color sel #00ff00

Drag select of 27 residues  
Drag select of 25 residues  
Drag select of 22 residues  

> color sel #00ff00

Drag select of 3 residues  

> color sel #00ff00

Drag select of 23 residues  

> color sel #ff0000

Drag select of 15 residues  

> color sel #ff0000

Drag select of 18 residues  
Drag select of 14 residues  

> select clear

Drag select of 12 residues  

> color sel #ff0000

Drag select of 9 residues  
Drag select of 18 residues  

> color sel #ff0000

Drag select of 6 residues  

> select clear

Drag select of 7 residues  
Drag select of 10 residues  
Drag select of 9 residues  

> color sel #ff0000

Drag select of 3 residues  
Drag select of 14 residues  

> color sel #ff0000

> select clear

[Repeated 1 time(s)]Drag select of 10 residues  
Drag select of 8 residues  

> color sel #ff0000

Drag select of 5 residues  

> color sel #ff0000

Drag select of 12 residues  

> color sel #ff0000

Drag select of 10 residues  
Drag select of 7 residues  

> color sel #ff0000

Drag select of 8 residues  

> color sel #ff0000

Drag select of 16 residues  
Drag select of 22 residues  
Drag select of 15 residues  

> select /U:5

257 atoms, 269 bonds, 8 residues, 1 model selected  
Drag select of 20 residues  

> color sel #ff0000

Drag select of 34 residues  

> color sel #ff0000

> select clear

> save "E:/data/HUH conjugation/figure/10HB-8064 draft 4-4-1-color for group
> 10ss(5).json/10HB-extesion.cxs"

——— End of log from Sat Oct 18 20:44:33 2025 ———

> view name session-start

opened ChimeraX session  

> select

450193 atoms, 485003 bonds, 7 pseudobonds, 14180 residues, 2 models selected  

> show sel surfaces

> transparency (#!1 & sel) 70

> select clear

Drag select of 10HB-extension.dat.pdb_M SES surface, 37413 of 1151834
triangles, 10HB-extension.dat.pdb_T SES surface, 11778 of 1093760 triangles,
10HB-extension.dat.pdb_V SES surface, 24 of 25645242 triangles, 10HB-
extension.dat.pdb_Y SES surface, 1089 of 1057484 triangles, 17 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_T SES surface, 11945 of 1093760
triangles, 6 residues  
Drag select of 10HB-extension.dat.pdb_M SES surface, 246 of 1151834 triangles,
10HB-extension.dat.pdb_R SES surface, 203 of 1255058 triangles, 10HB-
extension.dat.pdb_T SES surface, 31350 of 1093760 triangles, 10HB-
extension.dat.pdb_V SES surface, 146 of 25645242 triangles, 10HB-
extension.dat.pdb_W SES surface, 40215 of 1121114 triangles, 23 residues  

> color sel #00ff00

> hide sel surfaces

> select

450193 atoms, 485003 bonds, 7 pseudobonds, 14180 residues, 2 models selected  

> hide sel surfaces

> show sel surfaces

> select clear

Drag select of 10HB-extension.dat.pdb_M SES surface, 68 of 1151834 triangles,
10HB-extension.dat.pdb_V SES surface, 219 of 25645242 triangles, 10HB-
extension.dat.pdb_X SES surface, 37549 of 1017616 triangles, 10HB-
extension.dat.pdb_Y SES surface, 33781 of 1057484 triangles, 22 residues  

> color sel #00ff00

> select clear

Drag select of 10HB-extension.dat.pdb_D SES surface, 38827 of 1034642
triangles, 10HB-extension.dat.pdb_H SES surface, 30785 of 1031826 triangles,
10HB-extension.dat.pdb_J SES surface, 37942 of 1217404 triangles, 33 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_D SES surface, 1817 of 1034642
triangles, 10HB-extension.dat.pdb_H SES surface, 2529 of 1031826 triangles, 3
residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_D SES surface, 49 of 1034642 triangles,
10HB-extension.dat.pdb_J SES surface, 4068 of 1217404 triangles, 2 residues  
Drag select of 10HB-extension.dat.pdb_J SES surface, 1708 of 1217404
triangles, 1 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_A SES surface, 27705 of 1222240
triangles, 10HB-extension.dat.pdb_F SES surface, 28993 of 859142 triangles, 19
residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_A SES surface, 5032 of 1222240
triangles, 10HB-extension.dat.pdb_B SES surface, 2537 of 1337270 triangles, 3
residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_F SES surface, 11757 of 859142
triangles, 5 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_F SES surface, 201 of 859142 triangles,
10HB-extension.dat.pdb_V SES surface, 119 of 25645242 triangles, 10HB-
extension.dat.pdb_Z SES surface, 24209 of 1154086 triangles, 8 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_E SES surface, 12154 of 862300
triangles, 5 residues  
Drag select of 10HB-extension.dat.pdb_E SES surface, 39277 of 862300
triangles, 10HB-extension.dat.pdb_L SES surface, 24029 of 879990 triangles, 22
residues  
Drag select of 10HB-extension.dat.pdb_E SES surface, 39909 of 862300
triangles, 10HB-extension.dat.pdb_L SES surface, 28969 of 879990 triangles, 25
residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_A SES surface, 35128 of 1222240
triangles, 10HB-extension.dat.pdb_B SES surface, 8177 of 1337270 triangles,
10HB-extension.dat.pdb_Q SES surface, 30787 of 961010 triangles, 25 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_A SES surface, 288 of 1222240 triangles,
10HB-extension.dat.pdb_B SES surface, 17994 of 1337270 triangles, 7 residues  

> color sel #00ff00

Drag select of 10HB-extension.dat.pdb_K SES surface, 37015 of 758594
triangles, 10HB-extension.dat.pdb_M SES surface, 27007 of 1151834 triangles,
22 residues  

> select @@serial_number=50345

5 atoms, 5 residues, 1 model selected  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_K SES surface, 31359 of 758594
triangles, 10HB-extension.dat.pdb_M SES surface, 31800 of 1151834 triangles,
20 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_K SES surface, 2244 of 758594 triangles,
10HB-extension.dat.pdb_M SES surface, 2204 of 1151834 triangles, 10HB-
extension.dat.pdb_Y SES surface, 108 of 1057484 triangles, 4 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_Y SES surface, 39568 of 1057484
triangles, 12 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_V SES surface, 3643 of 25645242
triangles, 10HB-extension.dat.pdb_Y SES surface, 8164 of 1057484 triangles, 3
residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_L SES surface, 272 of 879990 triangles,
10HB-extension.dat.pdb_M SES surface, 234 of 1151834 triangles, 10HB-
extension.dat.pdb_V SES surface, 26437 of 25645242 triangles, 8 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_H SES surface, 37704 of 1031826
triangles, 10HB-extension.dat.pdb_V SES surface, 623 of 25645242 triangles, 13
residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_N SES surface, 22354 of 1026146
triangles, 10HB-extension.dat.pdb_Q SES surface, 39256 of 961010 triangles,
10HB-extension.dat.pdb_V SES surface, 805 of 25645242 triangles, 19 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_N SES surface, 13475 of 1026146
triangles, 6 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_G SES surface, 34362 of 950888
triangles, 10HB-extension.dat.pdb_Q SES surface, 704 of 961010 triangles,
10HB-extension.dat.pdb_V SES surface, 708 of 25645242 triangles, 11 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_C SES surface, 32723 of 1090580
triangles, 10HB-extension.dat.pdb_G SES surface, 32615 of 950888 triangles,
10HB-extension.dat.pdb_J SES surface, 10606 of 1217404 triangles, 26 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_J SES surface, 19818 of 1217404
triangles, 10HB-extension.dat.pdb_R SES surface, 1594 of 1255058 triangles,
10HB-extension.dat.pdb_S SES surface, 502 of 1224306 triangles, 10HB-
extension.dat.pdb_V SES surface, 330 of 25645242 triangles, 8 residues  

> color sel #ff0000

> select /V:900@O2P

1 atom, 1 residue, 1 model selected  
Drag select of 10HB-extension.dat.pdb_G SES surface, 18309 of 950888
triangles, 10HB-extension.dat.pdb_J SES surface, 11115 of 1217404 triangles,
10HB-extension.dat.pdb_R SES surface, 105 of 1255058 triangles, 10HB-
extension.dat.pdb_S SES surface, 155 of 1224306 triangles, 14 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_J SES surface, 120 of 1217404 triangles,
10HB-extension.dat.pdb_S SES surface, 36589 of 1224306 triangles, 10HB-
extension.dat.pdb_U SES surface, 15553 of 1240478 triangles, 19 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_S SES surface, 5181 of 1224306
triangles, 10HB-extension.dat.pdb_U SES surface, 10889 of 1240478 triangles,
10HB-extension.dat.pdb_V SES surface, 483 of 25645242 triangles, 8 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_F SES surface, 25714 of 859142
triangles, 10HB-extension.dat.pdb_I SES surface, 39453 of 1017818 triangles,
10HB-extension.dat.pdb_M SES surface, 28797 of 1151834 triangles, 10HB-
extension.dat.pdb_V SES surface, 24 of 25645242 triangles, 31 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_I SES surface, 3216 of 1017818
triangles, 10HB-extension.dat.pdb_M SES surface, 20328 of 1151834 triangles,
10 residues  

> color sel #ff0000

Drag select of 10HB-extension.dat.pdb_F SES surface, 2648 of 859142 triangles,
10HB-extension.dat.pdb_G SES surface, 2279 of 950888 triangles, 10HB-
extension.dat.pdb_M SES surface, 1891 of 1151834 triangles, 10HB-
extension.dat.pdb_R SES surface, 1838 of 1255058 triangles, 10HB-
extension.dat.pdb_V SES surface, 11198 of 25645242 triangles, 14 residues  

> color sel #ff0000

> select clear

> save "E:/data/HUH conjugation/figure/10HB-8064 draft 4-4-1-color for group
> 10ss(5).json/10HB-extesion-2.cxs"

——— End of log from Mon Oct 20 11:22:24 2025 ———

> view name session-start

opened ChimeraX session  

> select

450193 atoms, 485003 bonds, 7 pseudobonds, 14180 residues, 2 models selected  

> hide sel surfaces

> select clear

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #2  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #3  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #4  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #5  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #6  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> select add #2

3414 atoms, 3496 bonds, 436 residues, 1 model selected  

> select add #3

6828 atoms, 6992 bonds, 872 residues, 2 models selected  

> select add #4

10242 atoms, 10488 bonds, 1308 residues, 3 models selected  

> select add #5

13656 atoms, 13984 bonds, 1744 residues, 4 models selected  

> select add #6

17070 atoms, 17480 bonds, 2180 residues, 5 models selected  

> open "E:/data/HUH conjugation/figure/mobA-
> mcherry/converted_files/fold_moba_mcherry_no_his/fold_moba_mcherry_no_his_model_0.pdb"

Chain information for fold_moba_mcherry_no_his_model_0.pdb #7  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> select add #7

20484 atoms, 20976 bonds, 2616 residues, 6 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #2,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34,#3,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34,#4,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34,#5,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34,#6,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34,#7,1,0,0,37.011,0,1,0,-96.662,0,0,1,-424.34

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54,#3,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54,#4,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54,#5,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54,#6,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54,#7,0.20737,-0.97366,-0.094772,38.738,0.87347,0.14066,0.46612,-92.374,-0.44051,-0.17944,0.87963,-424.54

> view matrix models
> #2,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95,#3,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95,#4,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95,#5,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95,#6,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95,#7,-0.22123,-0.97454,0.036483,38.723,0.74875,-0.14577,0.64662,-91.229,-0.62484,0.17037,0.76194,-425.95

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56,#3,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56,#4,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56,#5,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56,#6,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56,#7,-0.22123,-0.97454,0.036483,44.755,0.74875,-0.14577,0.64662,-84.927,-0.62484,0.17037,0.76194,-407.56

> view matrix models
> #2,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56,#3,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56,#4,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56,#5,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56,#6,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56,#7,-0.22123,-0.97454,0.036483,53.924,0.74875,-0.14577,0.64662,-96.019,-0.62484,0.17037,0.76194,-411.56

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48,#3,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48,#4,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48,#5,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48,#6,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48,#7,-0.28747,-0.95161,0.10865,53.995,0.58663,-0.085267,0.80535,-95.903,-0.75712,0.29525,0.58275,-412.48

> view matrix models
> #2,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11,#3,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11,#4,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11,#5,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11,#6,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11,#7,-0.58901,-0.7973,0.13187,53.384,0.52025,-0.24924,0.81683,-95.484,-0.61839,0.54973,0.5616,-413.11

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17,#3,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17,#4,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17,#5,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17,#6,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17,#7,-0.58901,-0.7973,0.13187,46.176,0.52025,-0.24924,0.81683,-89.271,-0.61839,0.54973,0.5616,-411.17

> select subtract #7

17070 atoms, 17480 bonds, 2180 residues, 5 models selected  

> view matrix models
> #2,-0.58901,-0.7973,0.13187,7.9516,0.52025,-0.24924,0.81683,-69.272,-0.61839,0.54973,0.5616,-430.24,#3,-0.58901,-0.7973,0.13187,7.9516,0.52025,-0.24924,0.81683,-69.272,-0.61839,0.54973,0.5616,-430.24,#4,-0.58901,-0.7973,0.13187,7.9516,0.52025,-0.24924,0.81683,-69.272,-0.61839,0.54973,0.5616,-430.24,#5,-0.58901,-0.7973,0.13187,7.9516,0.52025,-0.24924,0.81683,-69.272,-0.61839,0.54973,0.5616,-430.24,#6,-0.58901,-0.7973,0.13187,7.9516,0.52025,-0.24924,0.81683,-69.272,-0.61839,0.54973,0.5616,-430.24

> view matrix models
> #2,-0.58901,-0.7973,0.13187,-0.67889,0.52025,-0.24924,0.81683,-81.943,-0.61839,0.54973,0.5616,-472.75,#3,-0.58901,-0.7973,0.13187,-0.67889,0.52025,-0.24924,0.81683,-81.943,-0.61839,0.54973,0.5616,-472.75,#4,-0.58901,-0.7973,0.13187,-0.67889,0.52025,-0.24924,0.81683,-81.943,-0.61839,0.54973,0.5616,-472.75,#5,-0.58901,-0.7973,0.13187,-0.67889,0.52025,-0.24924,0.81683,-81.943,-0.61839,0.54973,0.5616,-472.75,#6,-0.58901,-0.7973,0.13187,-0.67889,0.52025,-0.24924,0.81683,-81.943,-0.61839,0.54973,0.5616,-472.75

> view matrix models
> #2,-0.58901,-0.7973,0.13187,-12.667,0.52025,-0.24924,0.81683,-83.366,-0.61839,0.54973,0.5616,-423.38,#3,-0.58901,-0.7973,0.13187,-12.667,0.52025,-0.24924,0.81683,-83.366,-0.61839,0.54973,0.5616,-423.38,#4,-0.58901,-0.7973,0.13187,-12.667,0.52025,-0.24924,0.81683,-83.366,-0.61839,0.54973,0.5616,-423.38,#5,-0.58901,-0.7973,0.13187,-12.667,0.52025,-0.24924,0.81683,-83.366,-0.61839,0.54973,0.5616,-423.38,#6,-0.58901,-0.7973,0.13187,-12.667,0.52025,-0.24924,0.81683,-83.366,-0.61839,0.54973,0.5616,-423.38

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.19501,-0.97918,-0.056338,-12.335,0.47534,-0.1446,0.86784,-83.554,-0.85792,0.14245,0.49364,-422.65,#3,-0.19501,-0.97918,-0.056338,-12.335,0.47534,-0.1446,0.86784,-83.554,-0.85792,0.14245,0.49364,-422.65,#4,-0.19501,-0.97918,-0.056338,-12.335,0.47534,-0.1446,0.86784,-83.554,-0.85792,0.14245,0.49364,-422.65,#5,-0.19501,-0.97918,-0.056338,-12.335,0.47534,-0.1446,0.86784,-83.554,-0.85792,0.14245,0.49364,-422.65,#6,-0.19501,-0.97918,-0.056338,-12.335,0.47534,-0.1446,0.86784,-83.554,-0.85792,0.14245,0.49364,-422.65

> undo

> view matrix models
> #2,-0.039431,-0.83439,0.54977,-11.009,0.80865,0.29655,0.50807,-85.413,-0.58696,0.46461,0.66304,-422.85,#3,-0.039431,-0.83439,0.54977,-11.009,0.80865,0.29655,0.50807,-85.413,-0.58696,0.46461,0.66304,-422.85,#4,-0.039431,-0.83439,0.54977,-11.009,0.80865,0.29655,0.50807,-85.413,-0.58696,0.46461,0.66304,-422.85,#5,-0.039431,-0.83439,0.54977,-11.009,0.80865,0.29655,0.50807,-85.413,-0.58696,0.46461,0.66304,-422.85,#6,-0.039431,-0.83439,0.54977,-11.009,0.80865,0.29655,0.50807,-85.413,-0.58696,0.46461,0.66304,-422.85

> select subtract #6

13656 atoms, 13984 bonds, 1744 residues, 4 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.039431,-0.83439,0.54977,-81.51,0.80865,0.29655,0.50807,-45.933,-0.58696,0.46461,0.66304,-409.53,#3,-0.039431,-0.83439,0.54977,-81.51,0.80865,0.29655,0.50807,-45.933,-0.58696,0.46461,0.66304,-409.53,#4,-0.039431,-0.83439,0.54977,-81.51,0.80865,0.29655,0.50807,-45.933,-0.58696,0.46461,0.66304,-409.53,#5,-0.039431,-0.83439,0.54977,-81.51,0.80865,0.29655,0.50807,-45.933,-0.58696,0.46461,0.66304,-409.53

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.37228,-0.60256,0.70592,-81.384,0.54949,0.75606,0.35557,-47.798,-0.74797,0.25553,0.61257,-409.23,#3,0.37228,-0.60256,0.70592,-81.384,0.54949,0.75606,0.35557,-47.798,-0.74797,0.25553,0.61257,-409.23,#4,0.37228,-0.60256,0.70592,-81.384,0.54949,0.75606,0.35557,-47.798,-0.74797,0.25553,0.61257,-409.23,#5,0.37228,-0.60256,0.70592,-81.384,0.54949,0.75606,0.35557,-47.798,-0.74797,0.25553,0.61257,-409.23

> view matrix models
> #2,0.40137,-0.62903,0.66575,-81.393,0.55112,0.74642,0.37299,-47.725,-0.73156,0.2172,0.64626,-409.03,#3,0.40137,-0.62903,0.66575,-81.393,0.55112,0.74642,0.37299,-47.725,-0.73156,0.2172,0.64626,-409.03,#4,0.40137,-0.62903,0.66575,-81.393,0.55112,0.74642,0.37299,-47.725,-0.73156,0.2172,0.64626,-409.03,#5,0.40137,-0.62903,0.66575,-81.393,0.55112,0.74642,0.37299,-47.725,-0.73156,0.2172,0.64626,-409.03

> undo

[Repeated 2 time(s)]

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.039431,-0.83439,0.54977,-78.052,0.80865,0.29655,0.50807,-74.327,-0.58696,0.46461,0.66304,-418.19,#3,-0.039431,-0.83439,0.54977,-78.052,0.80865,0.29655,0.50807,-74.327,-0.58696,0.46461,0.66304,-418.19,#4,-0.039431,-0.83439,0.54977,-78.052,0.80865,0.29655,0.50807,-74.327,-0.58696,0.46461,0.66304,-418.19,#5,-0.039431,-0.83439,0.54977,-78.052,0.80865,0.29655,0.50807,-74.327,-0.58696,0.46461,0.66304,-418.19

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.55738,-0.52727,0.64134,-78.144,0.60885,0.78475,0.11603,-76.847,-0.56447,0.3258,0.75844,-417.54,#3,0.55738,-0.52727,0.64134,-78.144,0.60885,0.78475,0.11603,-76.847,-0.56447,0.3258,0.75844,-417.54,#4,0.55738,-0.52727,0.64134,-78.144,0.60885,0.78475,0.11603,-76.847,-0.56447,0.3258,0.75844,-417.54,#5,0.55738,-0.52727,0.64134,-78.144,0.60885,0.78475,0.11603,-76.847,-0.56447,0.3258,0.75844,-417.54

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.55738,-0.52727,0.64134,-84.153,0.60885,0.78475,0.11603,-33.331,-0.56447,0.3258,0.75844,-415.9,#3,0.55738,-0.52727,0.64134,-84.153,0.60885,0.78475,0.11603,-33.331,-0.56447,0.3258,0.75844,-415.9,#4,0.55738,-0.52727,0.64134,-84.153,0.60885,0.78475,0.11603,-33.331,-0.56447,0.3258,0.75844,-415.9,#5,0.55738,-0.52727,0.64134,-84.153,0.60885,0.78475,0.11603,-33.331,-0.56447,0.3258,0.75844,-415.9

> view matrix models
> #2,0.55738,-0.52727,0.64134,17.796,0.60885,0.78475,0.11603,78.314,-0.56447,0.3258,0.75844,-416.78,#3,0.55738,-0.52727,0.64134,17.796,0.60885,0.78475,0.11603,78.314,-0.56447,0.3258,0.75844,-416.78,#4,0.55738,-0.52727,0.64134,17.796,0.60885,0.78475,0.11603,78.314,-0.56447,0.3258,0.75844,-416.78,#5,0.55738,-0.52727,0.64134,17.796,0.60885,0.78475,0.11603,78.314,-0.56447,0.3258,0.75844,-416.78

> undo

> select subtract #5

10242 atoms, 10488 bonds, 1308 residues, 3 models selected  

> view matrix models
> #2,0.55738,-0.52727,0.64134,29.456,0.60885,0.78475,0.11603,101.17,-0.56447,0.3258,0.75844,-416.59,#3,0.55738,-0.52727,0.64134,29.456,0.60885,0.78475,0.11603,101.17,-0.56447,0.3258,0.75844,-416.59,#4,0.55738,-0.52727,0.64134,29.456,0.60885,0.78475,0.11603,101.17,-0.56447,0.3258,0.75844,-416.59

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.25588,0.87062,-0.42017,22.628,-0.95322,0.15488,-0.25958,100.58,-0.16092,0.46694,0.86952,-416.34,#3,0.25588,0.87062,-0.42017,22.628,-0.95322,0.15488,-0.25958,100.58,-0.16092,0.46694,0.86952,-416.34,#4,0.25588,0.87062,-0.42017,22.628,-0.95322,0.15488,-0.25958,100.58,-0.16092,0.46694,0.86952,-416.34

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.25588,0.87062,-0.42017,17.634,-0.95322,0.15488,-0.25958,107.07,-0.16092,0.46694,0.86952,-433.37,#3,0.25588,0.87062,-0.42017,17.634,-0.95322,0.15488,-0.25958,107.07,-0.16092,0.46694,0.86952,-433.37,#4,0.25588,0.87062,-0.42017,17.634,-0.95322,0.15488,-0.25958,107.07,-0.16092,0.46694,0.86952,-433.37

> view matrix models
> #2,0.25588,0.87062,-0.42017,16.382,-0.95322,0.15488,-0.25958,108.34,-0.16092,0.46694,0.86952,-431.71,#3,0.25588,0.87062,-0.42017,16.382,-0.95322,0.15488,-0.25958,108.34,-0.16092,0.46694,0.86952,-431.71,#4,0.25588,0.87062,-0.42017,16.382,-0.95322,0.15488,-0.25958,108.34,-0.16092,0.46694,0.86952,-431.71

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.41755,0.6103,-0.6732,16.562,-0.82786,-0.04989,-0.55871,108.22,-0.37456,0.7906,0.48441,-433.78,#3,0.41755,0.6103,-0.6732,16.562,-0.82786,-0.04989,-0.55871,108.22,-0.37456,0.7906,0.48441,-433.78,#4,0.41755,0.6103,-0.6732,16.562,-0.82786,-0.04989,-0.55871,108.22,-0.37456,0.7906,0.48441,-433.78

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.41755,0.6103,-0.6732,54.947,-0.82786,-0.04989,-0.55871,59.123,-0.37456,0.7906,0.48441,-428.62,#3,0.41755,0.6103,-0.6732,54.947,-0.82786,-0.04989,-0.55871,59.123,-0.37456,0.7906,0.48441,-428.62,#4,0.41755,0.6103,-0.6732,54.947,-0.82786,-0.04989,-0.55871,59.123,-0.37456,0.7906,0.48441,-428.62

> select subtract #4

6828 atoms, 6992 bonds, 872 residues, 2 models selected  

> view matrix models
> #2,0.41755,0.6103,-0.6732,-7.3674,-0.82786,-0.04989,-0.55871,69.263,-0.37456,0.7906,0.48441,-441.29,#3,0.41755,0.6103,-0.6732,-7.3674,-0.82786,-0.04989,-0.55871,69.263,-0.37456,0.7906,0.48441,-441.29

> ui mousemode right translate

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.41748,0.58864,-0.69226,-7.3587,-0.78592,-0.14849,-0.60023,69.457,-0.45611,0.79464,0.40063,-441.59,#3,0.41748,0.58864,-0.69226,-7.3587,-0.78592,-0.14849,-0.60023,69.457,-0.45611,0.79464,0.40063,-441.59

> view matrix models
> #2,0.77381,0.57236,-0.27133,-5.9118,-0.43222,0.164,-0.88673,68.156,-0.46303,0.80344,0.37429,-441.69,#3,0.77381,0.57236,-0.27133,-5.9118,-0.43222,0.164,-0.88673,68.156,-0.46303,0.80344,0.37429,-441.69

> select subtract #3

3414 atoms, 3496 bonds, 436 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.77381,0.57236,-0.27133,-52.263,-0.43222,0.164,-0.88673,53.603,-0.46303,0.80344,0.37429,-449.2

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.73974,0.67289,0.0027453,-51.846,-0.37508,0.41573,-0.82854,53.121,-0.55866,0.61188,0.55992,-448.28

> ui mousemode right translate

> select add #7

6828 atoms, 6992 bonds, 872 residues, 2 models selected  

> select subtract #7

3414 atoms, 3496 bonds, 436 residues, 1 model selected  

> select add #7

6828 atoms, 6992 bonds, 872 residues, 2 models selected  

> select subtract #7

3414 atoms, 3496 bonds, 436 residues, 1 model selected  

> select subtract #2

Nothing selected  

> select add #7

3414 atoms, 3496 bonds, 436 residues, 1 model selected  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
exception: access violation writing 0x0000000000000000  
  
Traceback (most recent call last):  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\updateloop.py", line 84, in draw_new_frame  
view.draw(check_for_changes = False)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\view.py", line 188, in draw  
self._draw_scene(camera, drawings)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\view.py", line 259, in _draw_scene  
draw_opaque(r, opaque_drawings)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1559, in draw_opaque  
_draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1572, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 784, in draw  
self.draw_self(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 791, in draw_self  
self._draw_geometry(renderer, opaque_only = any_transp)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 857, in _draw_geometry  
ds.draw(self.display_style)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1754, in draw  
eb.draw_elements(etype, ni)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 2859, in draw_elements  
GL.glDrawElementsInstanced(element_type, ne, GL.GL_UNSIGNED_INT, eo, ninst)  
File "src/latebind.pyx", line 40, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 312, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
OSError: exception: access violation writing 0x0000000000000000  
  

> select subtract #7

Nothing selected  
Traceback (most recent call last):  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\model_panel\tool.py", line 480, in _tree_change_cb  
run(self.session, "select " + mode + " #" + model.id_string)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3237, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 132, in select_subtract  
report_selection(session)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 192, in report_selection  
session.logger.status(', '.join(lines) + ' selected', log = True)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\logger.py", line 522, in status  
StatusLogger.status(self, msg, **kw)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\logger.py", line 220, in status  
if l.status(msg, color, secondary) and getattr(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1087, in status  
sbar.status(msg, color, secondary)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 165, in status  
self._draw_text(msg, color, secondary)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 175, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1613, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1572, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 784, in draw  
self.draw_self(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 795, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 831, in _draw_geometry  
t.bind_texture()  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3177, in bind_texture  
self.fill_opengl_texture()  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3220, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3097, in initialize_texture  
GL.glTexImage2D(gl_target, 0, iformat, size[0], size[1], 0, format,  
File "src/latebind.pyx", line 40, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 319, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 312, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
232,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  

> select add #7

3414 atoms, 3496 bonds, 436 residues, 1 model selected  
Traceback (most recent call last):  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\model_panel\tool.py", line 480, in _tree_change_cb  
run(self.session, "select " + mode + " #" + model.id_string)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3237, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 120, in select_add  
report_selection(session)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 192, in report_selection  
session.logger.status(', '.join(lines) + ' selected', log = True)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\logger.py", line 522, in status  
StatusLogger.status(self, msg, **kw)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\core\logger.py", line 220, in status  
if l.status(msg, color, secondary) and getattr(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1087, in status  
sbar.status(msg, color, secondary)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 165, in status  
self._draw_text(msg, color, secondary)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 175, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1613, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1572, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 784, in draw  
self.draw_self(renderer, draw_pass)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 795, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 831, in _draw_geometry  
t.bind_texture()  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3177, in bind_texture  
self.fill_opengl_texture()  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3220, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "D:\chimera X\chimerax\ChimeraX 1.11.dev202510120519\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3097, in initialize_texture  
GL.glTexImage2D(gl_target, 0, iformat, size[0], size[1], 0, format,  
File "src/latebind.pyx", line 40, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 319, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 312, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'\xc4\xda\xb4\xe6\xb2\xbb\xd7\xe3',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
735,  
46,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  




OpenGL version: 4.6 (Core Profile) Mesa 25.3.0-devel (git-c8fa4e643e)
OpenGL renderer: D3D12 (Qualcomm(R) Adreno(TM) X1-45 GPU)
OpenGL vendor: Microsoft Corporation

Python: 3.11.9
Locale: zh_CN.cp936
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows

Manufacturer: ASUSTeK COMPUTER INC.
Model: ASUS Zenbook A14 UX3407QA_UX3407QA
OS: Microsoft Windows 11 家庭中文版 (Build 26100)
Memory: 33,896,992,768
MaxProcessMemory: 137,438,953,344
CPU: 8 Snapdragon(R) X - X126100 - Qualcomm(R) Oryon(TM) CPU
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 3.10.0
    build: 1.3.0
    certifi: 2025.10.5
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.3
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.8
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.0.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.17
    ChimeraX-AtomicLibrary: 14.2.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.dev202510120519
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.1
    ChimeraX-Label: 1.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.17.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.3.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.11
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.4
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.5
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.2.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.10
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.2
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.48.4
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.5.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.10.7
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.4
    debugpy: 1.8.17
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.60.1
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2025.4.15
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.30.1
    ipython: 9.5.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.7
    jedi: 0.19.2
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.3
    matplotlib: 3.10.5
    matplotlib-inline: 0.1.7
    msgpack: 1.1.1
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.13.1
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.5
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.5.0
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.6
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.2.5
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.9.1
    PyQt6-Qt6: 6.9.2
    PyQt6-WebEngine-commercial: 6.9.0
    PyQt6-WebEngine-Qt6: 6.9.2
    PyQt6_sip: 13.10.2
    pytest: 8.4.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2
    RandomWords: 0.4.0
    requests: 2.32.5
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.2.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.2
    traitlets: 5.14.3
    typing_extensions: 4.15.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.14
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1

[Tom Goddard]

OpenGL out of memory error 1285 creating small status line message textures.