![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 weeks ago
Closed 2 weeks ago
#19195 closed defect (fixed)
Crash deleting atoms when cavities shown
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.0.1-arm64-arm-64bit
ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00000003122bf000 (most recent call first):
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x00000001ef5f3240 (most recent call first):
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 830 in delete
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/std_commands/delete.py", line 50 in delete_atoms
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3221 in run
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 1465 in
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 368 in event_loop
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1057 in init
File "/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1220 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, PIL._imaging, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree (total: 55)
{"app_name":"ChimeraX","timestamp":"2025-10-21 11:10:27.00 +0800","app_version":"1.10.0","slice_uuid":"9cf8124a-d876-34ad-b7ee-c011183ebc15","build_version":"1.10.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.0.1 (24A348)","roots_installed":0,"name":"ChimeraX","incident_id":"E301E820-CF9D-4607-ACE7-5C32A3C6D4AC"}
{
"uptime" : 1400000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac14,2",
"coalitionID" : 12461,
"osVersion" : {
"train" : "macOS 15.0.1",
"build" : "24A348",
"releaseType" : "User"
},
"captureTime" : "2025-10-21 11:10:26.4408 +0800",
"codeSigningMonitor" : 1,
"incident" : "E301E820-CF9D-4607-ACE7-5C32A3C6D4AC",
"pid" : 63402,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-10-21 11:09:58.2092 +0800",
"procStartAbsTime" : 33947113485309,
"procExitAbsTime" : 33947790822432,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.10.0","CFBundleVersion":"1.10.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"8AA5D8BE-0809-5F6A-A36B-399C1752C459","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "FA153C55-5783-7511-A83D-38C3B6202F68",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "F54C5805-71AF-4696-A166-B5E0CD25B251",
"wakeTime" : 8528,
"sleepWakeUUID" : "E610B075-5C8D-4518-B34B-092D91D52564",
"sip" : "enabled",
"vmRegionInfo" : "0x10 is not in any region. Bytes before following region: 4369596400\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10472c000-104730000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000010","rawCodes":[1,16],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000010"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":63402},
"vmregioninfo" : "0x10 is not in any region. Bytes before following region: 4369596400\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10472c000-104730000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":4698045080},{"value":108},{"value":95},{"value":101},{"value":0},{"value":3043998743121820071},{"value":3043998745929567207},{"value":14757395258967641293},{"value":4294967286},{"value":4698045010},{"value":0},{"value":53},{"value":4294967280},{"value":328},{"value":8447115288},{"value":0},{"value":11},{"value":259},{"value":8310960928,"symbolLocation":224,"symbol":"_main_thread"},{"value":0},{"value":1},{"value":4388177456,"symbolLocation":0,"symbol":"faulthandler_handlers"},{"value":12968581880},{"value":5943835945},{"value":6097274744},{"value":12968581680}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625636208},"cpsr":{"value":1073745920},"fp":{"value":4698045152},"sp":{"value":4698045120},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625404416,"matchesCrashFrame":1},"far":{"value":0}},"id":16224249,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":38400,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":152},{"imageOffset":28528,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":153},{"imageOffset":269336,"symbol":"raise","symbolLocation":32,"imageIndex":154},{"imageOffset":2417160,"symbol":"faulthandler_fatal_error","symbolLocation":392,"imageIndex":1},{"imageOffset":16772,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":155},{"imageOffset":605964,"symbol":"atomstruct::Structure::_get_interres_connectivity(std::__1::map, std::__1::allocator>>&, std::__1::map, std::__1::allocator>>&, std::__1::map, std::__1::allocator>>&, std::__1::set, std::__1::allocator>&, std::__1::set, std::__1::allocator>&, std::__1::set, std::__1::allocator> const*) const","symbolLocation":884,"imageIndex":82},{"imageOffset":605964,"symbol":"atomstruct::Structure::_get_interres_connectivity(std::__1::map, std::__1::allocator>>&, std::__1::map, std::__1::allocator>>&, std::__1::map, std::__1::allocator>>&, std::__1::set, std::__1::allocator>&, std::__1::set, std::__1::allocator>&, std::__1::set, std::__1::allocator> const*) const","symbolLocation":884,"imageIndex":82},{"imageOffset":598492,"symbol":"atomstruct::Structure::_delete_atoms(std::__1::set, std::__1::allocator> const&, bool)","symbolLocation":576,"imageIndex":82},{"imageOffset":594196,"symbol":"atomstruct::Structure::delete_atoms(std::__1::vector> const&)","symbolLocation":92,"imageIndex":82},{"imageOffset":20924,"symbol":"atom_delete","symbolLocation":592,"imageIndex":85},{"imageOffset":32848,"symbol":"ffi_call_SYSV","symbolLocation":80,"imageIndex":156},{"imageOffset":68356,"symbol":"ffi_call_int","symbolLocation":1208,"imageIndex":156},{"imageOffset":49516,"symbol":"_ctypes_callproc","symbolLocation":1372,"imageIndex":26},{"imageOffset":24932,"symbol":"PyCFuncPtr_call","symbolLocation":204,"imageIndex":26},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":1},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":597656,"symbol":"_PyVectorcall_Call","symbolLocation":116,"imageIndex":1},{"imageOffset":1799532,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":65272,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":1408380,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":152,"imageIndex":44},{"imageOffset":1407928,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":292,"imageIndex":44},{"imageOffset":1411480,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":92,"imageIndex":44},{"imageOffset":1411336,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":68,"imageIndex":44},{"imageOffset":921488,"imageIndex":45},{"imageOffset":4176044,"symbol":"QAction::activate(QAction::ActionEvent)","symbolLocation":368,"imageIndex":50},{"imageOffset":890112,"symbol":"QObject::event(QEvent*)","symbolLocation":644,"imageIndex":45},{"imageOffset":397576,"symbol":"sipQAction::event(QEvent*)","symbolLocation":224,"imageIndex":52},{"imageOffset":66200,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":336,"imageIndex":49},{"imageOffset":70228,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":504,"imageIndex":49},{"imageOffset":1430992,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":48},{"imageOffset":598928,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":200,"imageIndex":45},{"imageOffset":603292,"symbol":"QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*)","symbolLocation":532,"imageIndex":45},{"imageOffset":102732,"imageIndex":71},{"imageOffset":107416,"imageIndex":71},{"imageOffset":517140,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":28,"imageIndex":157},{"imageOffset":517032,"symbol":"__CFRunLoopDoSource0","symbolLocation":176,"imageIndex":157},{"imageOffset":516364,"symbol":"__CFRunLoopDoSources0","symbolLocation":244,"imageIndex":157},{"imageOffset":511224,"symbol":"__CFRunLoopRun","symbolLocation":840,"imageIndex":157},{"imageOffset":508724,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":157},{"imageOffset":1097932,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":158},{"imageOffset":1121564,"symbol":"ReceiveNextEventCommon","symbolLocation":220,"imageIndex":158},{"imageOffset":1122336,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":158},{"imageOffset":240240,"symbol":"_DPSNextEvent","symbolLocation":660,"imageIndex":159},{"imageOffset":9832376,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":688,"imageIndex":159},{"imageOffset":187260,"symbol":"-[NSApplication run]","symbolLocation":480,"imageIndex":159},{"imageOffset":97412,"imageIndex":71},{"imageOffset":639864,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":596,"imageIndex":45},{"imageOffset":600940,"symbol":"QCoreApplication::exec()","symbolLocation":144,"imageIndex":45},{"imageOffset":2508944,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":48},{"imageOffset":1004504,"symbol":"cfunction_call","symbolLocation":96,"imageIndex":1},{"imageOffset":594156,"symbol":"_PyObject_MakeTpCall","symbolLocation":128,"imageIndex":1},{"imageOffset":1789244,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54984,"imageIndex":1},{"imageOffset":1729512,"symbol":"PyEval_EvalCode","symbolLocation":276,"imageIndex":1},{"imageOffset":1707120,"symbol":"builtin_exec","symbolLocation":428,"imageIndex":1},{"imageOffset":1007044,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":80,"imageIndex":1},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":2389028,"symbol":"pymain_run_module","symbolLocation":256,"imageIndex":1},{"imageOffset":2387652,"symbol":"Py_RunMain","symbolLocation":1784,"imageIndex":1},{"imageOffset":2392180,"symbol":"pymain_main","symbolLocation":52,"imageIndex":1},{"imageOffset":2392116,"symbol":"Py_Main","symbolLocation":36,"imageIndex":1},{"imageOffset":15764,"symbol":"main","symbolLocation":128,"imageIndex":0},{"imageOffset":25204,"symbol":"start","symbolLocation":2840,"imageIndex":160}]},{"id":16224276,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6103003136},{"value":15875},{"value":6102466560},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6103003136},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224283,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6103576576},{"value":24323},{"value":6103040000},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6103576576},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224353,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6104150016},{"value":85251},{"value":6103613440},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6104150016},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224390,"name":"ThreadPoolServiceThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553151183104},{"value":4},{"value":0},{"value":0},{"value":1944706494},{"value":0},{"value":0},{"value":48},{"value":2},{"value":36355},{"value":0},{"value":3108059350},{"value":3105961979},{"value":369},{"value":6112571392},{"value":0},{"value":5975944432},{"value":4402764432},{"value":0},{"value":6112570664},{"value":12297829382473034411},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5805844356},"cpsr":{"value":2684358656},"fp":{"value":6112570640},"sp":{"value":6112570544},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625418204},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":77670276,"imageIndex":56},{"imageOffset":77669752,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77324944,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224391,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":157243047673856},{"value":0},{"value":157243047673856},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":36611},{"value":2095104},{"value":2043},{"value":18446744073709551569},{"value":269},{"value":0},{"value":0},{"value":32},{"value":157243047673856},{"value":0},{"value":157243047673856},{"value":6120992048},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6120991392},"sp":{"value":6120991312},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374288,"imageIndex":56},{"imageOffset":77374004,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224392,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":164939629068288},{"value":0},{"value":164939629068288},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":38403},{"value":2095104},{"value":2043},{"value":18446744073709551569},{"value":117},{"value":0},{"value":0},{"value":32},{"value":164939629068288},{"value":0},{"value":164939629068288},{"value":6129413424},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6129412768},"sp":{"value":6129412688},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374156,"imageIndex":56},{"imageOffset":77374064,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224393,"name":"Chrome_IOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553151015552},{"value":3},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":9223372036854775809},{"value":44291},{"value":0},{"value":2095104},{"value":2043},{"value":369},{"value":6137835520},{"value":0},{"value":5975935504},{"value":4402690896},{"value":0},{"value":6137834776},{"value":12297829382473034411},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5805844356},"cpsr":{"value":1610616832},"fp":{"value":6137834752},"sp":{"value":6137834656},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625418204},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":77670276,"imageIndex":56},{"imageOffset":77669752,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":49839956,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224394,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":272691768590336},{"value":0},{"value":272691768590336},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":63491},{"value":719325316},{"value":717226035},{"value":18446744073709551569},{"value":6146256896},{"value":0},{"value":0},{"value":32},{"value":272691768590336},{"value":0},{"value":272691768590336},{"value":6146255888},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6146255232},"sp":{"value":6146255152},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77143120,"imageIndex":56},{"imageOffset":76806856,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224395,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":270509925203968},{"value":0},{"value":270509925203968},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":62983},{"value":2095104},{"value":2043},{"value":18446744073709551569},{"value":247},{"value":0},{"value":0},{"value":32},{"value":270509925203968},{"value":0},{"value":270509925203968},{"value":6154677552},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6154676896},"sp":{"value":6154676816},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374288,"imageIndex":56},{"imageOffset":77374004,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224396,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":194626443018240},{"value":0},{"value":194626443018240},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":45315},{"value":3407880444},{"value":3405783035},{"value":18446744073709551569},{"value":252},{"value":0},{"value":0},{"value":32},{"value":194626443018240},{"value":0},{"value":194626443018240},{"value":6163098928},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6163098272},"sp":{"value":6163098192},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374288,"imageIndex":56},{"imageOffset":77374004,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224397,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":45571},{"value":2772817989},{"value":2770720763},{"value":18446744073709551569},{"value":69},{"value":0},{"value":0},{"value":32},{"value":195725954646016},{"value":0},{"value":195725954646016},{"value":6171520304},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6171519648},"sp":{"value":6171519568},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374288,"imageIndex":56},{"imageOffset":77374004,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224398,"name":"ThreadPoolForegroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":267194210451456},{"value":0},{"value":267194210451456},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":62211},{"value":4129442060},{"value":4127344635},{"value":18446744073709551569},{"value":4674289152},{"value":0},{"value":0},{"value":32},{"value":267194210451456},{"value":0},{"value":267194210451456},{"value":6179941680},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6179941024},"sp":{"value":6179940944},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374288,"imageIndex":56},{"imageOffset":77374004,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224399,"name":"Chrome_InProcGpuThread","threadState":{"x":[{"value":105553144630560},{"value":16788603},{"value":105553117637312},{"value":0},{"value":7},{"value":2162270279},{"value":105553144630560},{"value":2},{"value":2},{"value":2},{"value":5912469224,"symbolLocation":1831520,"symbol":"vtable for media::SCKAudioInputStream"},{"value":62579042877440},{"value":48},{"value":105553139630956},{"value":2095104},{"value":2043},{"value":2162270279},{"value":70},{"value":0},{"value":6188353744},{"value":6188351096},{"value":105553144630560},{"value":0},{"value":1},{"value":14935765951709184},{"value":67120244},{"value":1},{"value":1},{"value":2147483647}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5809152844},"cpsr":{"value":1610616832},"fp":{"value":6188350992},"sp":{"value":6188350912},"esr":{"value":2181038087,"description":"(Instruction Abort) Translation fault"},"pc":{"value":5809152876},"far":{"value":0}},"frames":[{"imageOffset":80978796,"imageIndex":56},{"imageOffset":80978264,"imageIndex":56},{"imageOffset":80977916,"imageIndex":56},{"imageOffset":80977664,"imageIndex":56},{"imageOffset":80977412,"imageIndex":56},{"imageOffset":80977168,"imageIndex":56},{"imageOffset":80976916,"imageIndex":56},{"imageOffset":80976684,"imageIndex":56},{"imageOffset":80976452,"imageIndex":56},{"imageOffset":80976220,"imageIndex":56},{"imageOffset":80975988,"imageIndex":56},{"imageOffset":80975756,"imageIndex":56},{"imageOffset":80975524,"imageIndex":56},{"imageOffset":80974840,"imageIndex":56},{"imageOffset":80958112,"imageIndex":56},{"imageOffset":80958660,"imageIndex":56},{"imageOffset":80960336,"imageIndex":56},{"imageOffset":80965836,"imageIndex":56},{"imageOffset":80955608,"imageIndex":56},{"imageOffset":80954760,"imageIndex":56},{"imageOffset":80952324,"imageIndex":56},{"imageOffset":80944840,"imageIndex":56},{"imageOffset":80943236,"imageIndex":56},{"imageOffset":80943408,"imageIndex":56},{"imageOffset":80884412,"imageIndex":56},{"imageOffset":80931600,"imageIndex":56},{"imageOffset":80931236,"imageIndex":56},{"imageOffset":80930680,"imageIndex":56},{"imageOffset":80883084,"imageIndex":56},{"imageOffset":80885736,"imageIndex":56},{"imageOffset":9935460,"imageIndex":56},{"imageOffset":9937960,"imageIndex":56},{"imageOffset":81883932,"imageIndex":56},{"imageOffset":82082056,"imageIndex":56},{"imageOffset":82083516,"imageIndex":56},{"imageOffset":81725920,"imageIndex":56},{"imageOffset":81728904,"imageIndex":56},{"imageOffset":81713888,"imageIndex":56},{"imageOffset":9313160,"imageIndex":56},{"imageOffset":103345912,"imageIndex":56},{"imageOffset":103263364,"imageIndex":56},{"imageOffset":117580316,"imageIndex":56},{"imageOffset":117555608,"imageIndex":56},{"imageOffset":117565112,"imageIndex":56},{"imageOffset":111708800,"imageIndex":56},{"imageOffset":117938832,"imageIndex":56},{"imageOffset":117938052,"imageIndex":56},{"imageOffset":117959876,"imageIndex":56},{"imageOffset":117973188,"imageIndex":56},{"imageOffset":111760168,"imageIndex":56},{"imageOffset":111757400,"imageIndex":56},{"imageOffset":77154364,"imageIndex":56},{"imageOffset":77270844,"imageIndex":56},{"imageOffset":77269868,"imageIndex":56},{"imageOffset":76806776,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224400,"name":"Chrome_ChildIOThread","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553143592784},{"value":1},{"value":0},{"value":0},{"value":6196782720},{"value":0},{"value":0},{"value":1},{"value":2},{"value":48387},{"value":0},{"value":2611183693},{"value":2609084442},{"value":369},{"value":6196785152},{"value":0},{"value":5953994560},{"value":4407943056},{"value":0},{"value":6196784408},{"value":12297829382473034411},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5805844356},"cpsr":{"value":2684358656},"fp":{"value":6196784384},"sp":{"value":6196784288},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625418204},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":77670276,"imageIndex":56},{"imageOffset":77669752,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":120628144,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224401,"name":"CompositorTileWorker1","threadState":{"x":[{"value":260},{"value":0},{"value":512},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6205206088},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":5966968088},{"value":5966968216},{"value":6205206752},{"value":0},{"value":0},{"value":512},{"value":513},{"value":768},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":6205206208},"sp":{"value":6205206064},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":77533976,"imageIndex":56},{"imageOffset":110943884,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224402,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":257332965539840},{"value":0},{"value":257332965539840},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":59915},{"value":4138162215},{"value":4136063014},{"value":18446744073709551569},{"value":39},{"value":0},{"value":0},{"value":32},{"value":257332965539840},{"value":0},{"value":257332965539840},{"value":6213627184},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6213626528},"sp":{"value":6213626448},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374332,"imageIndex":56},{"imageOffset":77374088,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224403,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":218815698829312},{"value":0},{"value":218815698829312},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":50947},{"value":1778384899},{"value":1778384892},{"value":18446744073709551569},{"value":6222049280},{"value":0},{"value":0},{"value":32},{"value":218815698829312},{"value":0},{"value":218815698829312},{"value":6222048272},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6222047616},"sp":{"value":6222047536},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77143120,"imageIndex":56},{"imageOffset":76806856,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224404,"name":"VizCompositorThread","threadState":{"x":[{"value":268451845},{"value":17179869442},{"value":0},{"value":246303489523712},{"value":0},{"value":246303489523712},{"value":32},{"value":4},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":57347},{"value":2619568205},{"value":2617469022},{"value":18446744073709551569},{"value":6230470656},{"value":0},{"value":4},{"value":32},{"value":246303489523712},{"value":0},{"value":246303489523712},{"value":6230469664},{"value":0},{"value":17179870466},{"value":17179869442},{"value":1282}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6230469008},"sp":{"value":6230468928},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":76806888,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224407,"name":"NetworkService","threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":105553166623648},{"value":2},{"value":0},{"value":0},{"value":6238889648},{"value":0},{"value":0},{"value":2},{"value":2},{"value":52739},{"value":0},{"value":3435386939},{"value":3433287731},{"value":369},{"value":6238892032},{"value":0},{"value":5976480368},{"value":4669683200},{"value":0},{"value":6238891336},{"value":12297829382473034411},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5805844356},"cpsr":{"value":2684358656},"fp":{"value":6238891312},"sp":{"value":6238891216},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625418204},"far":{"value":0}},"frames":[{"imageOffset":52188,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":77670276,"imageIndex":56},{"imageOffset":77669752,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224408,"name":"NetworkNotificationThreadMac","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":239706419757056},{"value":0},{"value":239706419757056},{"value":2},{"value":4294967295},{"value":18446744073709550527},{"value":2},{"value":0},{"value":0},{"value":0},{"value":55811},{"value":0},{"value":0},{"value":18446744073709551569},{"value":8447097728},{"value":0},{"value":4294967295},{"value":2},{"value":239706419757056},{"value":0},{"value":239706419757056},{"value":6247308728},{"value":8589934592},{"value":21592279046},{"value":21592279046},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6247308576},"sp":{"value":6247308496},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":517564,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":157},{"imageOffset":511596,"symbol":"__CFRunLoopRun","symbolLocation":1212,"imageIndex":157},{"imageOffset":508724,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":157},{"imageOffset":370968,"symbol":"-[NSRunLoop(NSRunLoop) runMode:beforeDate:]","symbolLocation":212,"imageIndex":162},{"imageOffset":77876416,"imageIndex":56},{"imageOffset":77870672,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224409,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":238606908129280},{"value":0},{"value":238606908129280},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":55555},{"value":1486880844},{"value":1486880764},{"value":18446744073709551569},{"value":6255734784},{"value":0},{"value":0},{"value":32},{"value":238606908129280},{"value":0},{"value":238606908129280},{"value":6255733776},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6255733120},"sp":{"value":6255733040},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77143120,"imageIndex":56},{"imageOffset":76806856,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224410,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":283686884868096},{"value":0},{"value":283686884868096},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":66051},{"value":2820755564},{"value":2818656468},{"value":18446744073709551569},{"value":5103169536},{"value":0},{"value":0},{"value":32},{"value":283686884868096},{"value":0},{"value":283686884868096},{"value":6264155440},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6264154784},"sp":{"value":6264154704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374376,"imageIndex":56},{"imageOffset":77374076,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224425,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6273495040},{"value":137475},{"value":6272958464},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6273495040},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224426,"name":"NetworkConfigWatcher","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":349657582534656},{"value":0},{"value":349657582534656},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":81411},{"value":1858076850},{"value":1858076668},{"value":18446744073709551569},{"value":6375174144},{"value":0},{"value":0},{"value":32},{"value":349657582534656},{"value":0},{"value":349657582534656},{"value":6375173136},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":6375172480},"sp":{"value":6375172400},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77143120,"imageIndex":56},{"imageOffset":76806856,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224430,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":1280},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999999000},{"value":6400306504},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":105553178091776},{"value":105553178091840},{"value":6400307424},{"value":999999000},{"value":29},{"value":1280},{"value":1281},{"value":1536},{"value":18446744072709551616},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":6400306624},"sp":{"value":6400306480},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":2251416,"imageIndex":45},{"imageOffset":2251024,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2226388,"imageIndex":45},{"imageOffset":2192952,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224431,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":1280},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999998000},{"value":6410497352},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":105553178092160},{"value":105553178092224},{"value":6410498272},{"value":999998000},{"value":29},{"value":1280},{"value":1281},{"value":1536},{"value":18446744072709551616},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":6410497472},"sp":{"value":6410497328},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":2251416,"imageIndex":45},{"imageOffset":2251024,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2226388,"imageIndex":45},{"imageOffset":2192952,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224432,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":1792},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999998000},{"value":6411070792},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":105553178092544},{"value":105553178092608},{"value":6411071712},{"value":999998000},{"value":29},{"value":1792},{"value":1793},{"value":2048},{"value":18446744072709551616},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":6411070912},"sp":{"value":6411070768},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":2251416,"imageIndex":45},{"imageOffset":2251024,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2226388,"imageIndex":45},{"imageOffset":2192952,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224433,"name":"Thread (pooled)","threadState":{"x":[{"value":260},{"value":0},{"value":1792},{"value":0},{"value":0},{"value":160},{"value":29},{"value":999998000},{"value":6411644232},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":105553178092928},{"value":105553178092992},{"value":6411645152},{"value":999998000},{"value":29},{"value":1792},{"value":1793},{"value":2048},{"value":18446744072709551616},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":6411644352},"sp":{"value":6411644208},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}},"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":2251416,"imageIndex":45},{"imageOffset":2251024,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":108,"imageIndex":45},{"imageOffset":2226388,"imageIndex":45},{"imageOffset":2192952,"imageIndex":45},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224438,"name":"ThreadPoolBackgroundWorker","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":513484815073280},{"value":0},{"value":513484815073280},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":119555},{"value":3951308949},{"value":3949209605},{"value":18446744073709551569},{"value":149},{"value":0},{"value":0},{"value":32},{"value":513484815073280},{"value":0},{"value":513484815073280},{"value":12980956464},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":12980955808},"sp":{"value":12980955728},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374156,"imageIndex":56},{"imageOffset":77374064,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224453,"name":"com.apple.NSEventThread","threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":494810297270272},{"value":0},{"value":494810297270272},{"value":2},{"value":4294967295},{"value":18446744073709550527},{"value":2},{"value":0},{"value":0},{"value":0},{"value":115207},{"value":0},{"value":0},{"value":18446744073709551569},{"value":8447097728},{"value":0},{"value":4294967295},{"value":2},{"value":494810297270272},{"value":0},{"value":494810297270272},{"value":12926066792},{"value":8589934592},{"value":21592279046},{"value":21592279046},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":12926066640},"sp":{"value":12926066560},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":517564,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":157},{"imageOffset":511596,"symbol":"__CFRunLoopRun","symbolLocation":1212,"imageIndex":157},{"imageOffset":508724,"symbol":"CFRunLoopRunSpecific","symbolLocation":572,"imageIndex":157},{"imageOffset":1440708,"symbol":"_NSEventThread","symbolLocation":148,"imageIndex":159},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224454,"name":"MemoryInfra","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":455210698801152},{"value":0},{"value":455210698801152},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":105987},{"value":3078787116},{"value":3076687933},{"value":18446744073709551569},{"value":12934492160},{"value":0},{"value":0},{"value":32},{"value":455210698801152},{"value":0},{"value":455210698801152},{"value":12934491152},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":12934490496},"sp":{"value":12934490416},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77143120,"imageIndex":56},{"imageOffset":76806856,"imageIndex":56},{"imageOffset":77272856,"imageIndex":56},{"imageOffset":77019148,"imageIndex":56},{"imageOffset":77432160,"imageIndex":56},{"imageOffset":77432544,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224455,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":479399954612224},{"value":0},{"value":479399954612224},{"value":32},{"value":0},{"value":18446744073709550527},{"value":32},{"value":0},{"value":0},{"value":0},{"value":111619},{"value":2343192588},{"value":2341093389},{"value":18446744073709551569},{"value":12},{"value":0},{"value":0},{"value":32},{"value":479399954612224},{"value":0},{"value":479399954612224},{"value":13119319344},{"value":0},{"value":17179869186},{"value":17179869186},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625445328},"cpsr":{"value":4096},"fp":{"value":13119318688},"sp":{"value":13119318608},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625369652},"far":{"value":0}},"frames":[{"imageOffset":3636,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":79312,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39384,"symbol":"mach_msg_overwrite","symbolLocation":480,"imageIndex":152},{"imageOffset":4476,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":77644624,"imageIndex":56},{"imageOffset":77143240,"imageIndex":56},{"imageOffset":77377520,"imageIndex":56},{"imageOffset":77374852,"imageIndex":56},{"imageOffset":77374200,"imageIndex":56},{"imageOffset":77374112,"imageIndex":56},{"imageOffset":77536044,"imageIndex":56},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":16224456,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12935065288},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584824848,"symbolLocation":16,"symbol":"thread_status"},{"value":4584824912,"symbolLocation":80,"symbol":"thread_status"},{"value":12935065824},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12935065408},"sp":{"value":12935065264},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224457,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12935638728},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584824976,"symbolLocation":144,"symbol":"thread_status"},{"value":4584825040,"symbolLocation":208,"symbol":"thread_status"},{"value":12935639264},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12935638848},"sp":{"value":12935638704},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224458,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12936212168},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584825104,"symbolLocation":272,"symbol":"thread_status"},{"value":4584825168,"symbolLocation":336,"symbol":"thread_status"},{"value":12936212704},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12936212288},"sp":{"value":12936212144},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224459,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12936785608},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584825232,"symbolLocation":400,"symbol":"thread_status"},{"value":4584825296,"symbolLocation":464,"symbol":"thread_status"},{"value":12936786144},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12936785728},"sp":{"value":12936785584},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224460,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12937359048},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584825360,"symbolLocation":528,"symbol":"thread_status"},{"value":4584825424,"symbolLocation":592,"symbol":"thread_status"},{"value":12937359584},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12937359168},"sp":{"value":12937359024},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224461,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12937932488},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584825488,"symbolLocation":656,"symbol":"thread_status"},{"value":4584825552,"symbolLocation":720,"symbol":"thread_status"},{"value":12937933024},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12937932608},"sp":{"value":12937932464},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224462,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":1502040,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":19},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":0},{"value":0},{"value":12938505928},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":4584825616,"symbolLocation":784,"symbol":"thread_status"},{"value":4584825680,"symbolLocation":848,"symbol":"thread_status"},{"value":12938506464},{"value":0},{"value":0},{"value":0},{"value":1},{"value":256},{"value":4584738816,"symbolLocation":16,"symbol":"gemm_driver.level3_lock"},{"value":1}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":12938506048},"sp":{"value":12938505904},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}},{"id":16224467,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6325071872},{"value":165635},{"value":6324535296},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6325071872},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224596,"frames":[{"imageOffset":8424,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}],"threadState":{"x":[{"value":6305771520},{"value":0},{"value":6305234944},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6305771520},"esr":{"value":0,"description":" Address size fault"},"pc":{"value":6625616104},"far":{"value":0}}},{"id":16224635,"frames":[{"imageOffset":17868,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30868,"symbol":"_pthread_cond_wait","symbolLocation":1204,"imageIndex":153},{"imageOffset":2309180,"symbol":"PyThread_acquire_lock_timed","symbolLocation":336,"imageIndex":1},{"imageOffset":2844860,"symbol":"acquire_timed","symbolLocation":308,"imageIndex":1},{"imageOffset":2845440,"symbol":"lock_PyThread_acquire_lock","symbolLocation":56,"imageIndex":1},{"imageOffset":664632,"symbol":"method_vectorcall_VARARGS_KEYWORDS","symbolLocation":148,"imageIndex":1},{"imageOffset":1788292,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":54032,"imageIndex":1},{"imageOffset":1811404,"symbol":"_PyEval_Vector","symbolLocation":156,"imageIndex":1},{"imageOffset":611492,"symbol":"method_vectorcall","symbolLocation":388,"imageIndex":1},{"imageOffset":2848544,"symbol":"thread_run","symbolLocation":200,"imageIndex":1},{"imageOffset":2308224,"symbol":"pythread_wrapper","symbolLocation":48,"imageIndex":1},{"imageOffset":29412,"symbol":"_pthread_start","symbolLocation":136,"imageIndex":153},{"imageOffset":8444,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}],"threadState":{"x":[{"value":260},{"value":0},{"value":0},{"value":0},{"value":0},{"value":160},{"value":15},{"value":0},{"value":13189770008},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8447115216},{"value":0},{"value":105553176286264},{"value":105553176286216},{"value":13189771488},{"value":0},{"value":15},{"value":0},{"value":1},{"value":256},{"value":2361183241434822607},{"value":18428297329650842065}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6625638548},"cpsr":{"value":1610616832},"fp":{"value":13189770128},"sp":{"value":13189769984},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":6625383884},"far":{"value":0}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 4369596416,
"CFBundleShortVersionString" : "1.10.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "9cf8124a-d876-34ad-b7ee-c011183ebc15",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.10.0.0"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4383899648,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 3948544,
"uuid" : "88bffd37-99d8-36ab-9b95-9f54b30bd667",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4372398080,
"size" : 49152,
"uuid" : "51d31d0d-1dcc-31ad-b6c1-73d57e544a3a",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4372135936,
"size" : 81920,
"uuid" : "3b2e1e73-f5e1-3fa3-80b3-e46009060893",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4372316160,
"size" : 16384,
"uuid" : "39aa96c6-b691-3e20-9540-292b9dd1c861",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4375904256,
"size" : 32768,
"uuid" : "65172ede-2b95-337d-970f-ed6c4a217cb1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376018944,
"size" : 16384,
"uuid" : "dc7a591b-ef8a-3b77-9396-ecee27303fdb",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376690688,
"size" : 196608,
"uuid" : "a4b86716-73ef-3046-b7ee-1d069dfd7cd0",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376100864,
"size" : 16384,
"uuid" : "a97f3cfd-a5a7-3ce2-9eb6-5ebc0943bd1d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376182784,
"size" : 16384,
"uuid" : "1eab426b-5d06-3a22-b7b5-6dbc112704d6",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376264704,
"size" : 16384,
"uuid" : "487467f0-5417-397f-8fb9-43ce116abec8",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376346624,
"size" : 32768,
"uuid" : "c4b2ad90-cc7d-3780-bee9-9f1dbc2aa560",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376444928,
"size" : 32768,
"uuid" : "167d8231-8346-37b6-9d67-149a1fe3df21",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376559616,
"size" : 16384,
"uuid" : "9e9f3dfb-1383-3420-bfcf-d996842d8e9e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4376985600,
"size" : 16384,
"uuid" : "d685528c-5d21-3c1a-b720-81f8ba0b399a",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4377067520,
"size" : 32768,
"uuid" : "d25f2f2d-a87d-3870-ad6a-3d977d50c9ca",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4375805952,
"size" : 16384,
"uuid" : "6596c4fd-d7b2-38ef-a7c5-6266a783c2b9",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4380246016,
"size" : 540672,
"uuid" : "5d8c8912-3607-31f9-a88b-b1fce3d10fca",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394418176,
"size" : 2670592,
"uuid" : "744b099b-9156-3efd-95ee-949f9bec068e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4563402752,
"size" : 21299200,
"uuid" : "9854a721-2573-3169-81ec-19ea40ce8077",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4402970624,
"size" : 3522560,
"uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379639808,
"size" : 311296,
"uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379426816,
"size" : 65536,
"uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4380016640,
"size" : 98304,
"uuid" : "ad5b1457-a682-3233-ac84-0f75b349239d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4375674880,
"size" : 16384,
"uuid" : "c1a0a0c0-1986-3338-a63d-eb396e783c91",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4381982720,
"size" : 65536,
"uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4383571968,
"size" : 81920,
"uuid" : "6c214dd2-6044-3285-949b-8d8ba72ca17b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4383358976,
"size" : 98304,
"uuid" : "09f94631-f551-3559-ba88-aff49917d8fe",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4383178752,
"size" : 65536,
"uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393009152,
"size" : 622592,
"uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392517632,
"size" : 147456,
"uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394008576,
"size" : 196608,
"uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4379262976,
"size" : 32768,
"uuid" : "322b4be7-35a8-331a-a549-7a0297d9dd70",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4397727744,
"size" : 1687552,
"uuid" : "59149ee6-b873-3c5d-8fed-d11966210295",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4383768576,
"size" : 32768,
"uuid" : "3206e248-2c9b-345c-98ac-8f9dfc6d639b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4400447488,
"size" : 311296,
"uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392747008,
"size" : 65536,
"uuid" : "7dab4595-a351-3061-861b-c426baee85b3",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393730048,
"size" : 65536,
"uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4400054272,
"size" : 81920,
"uuid" : "35fb9307-f991-3159-86db-21f6c67b9198",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392402944,
"size" : 49152,
"uuid" : "17a4344b-3221-36c4-9019-53cc1223e124",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4409262080,
"size" : 737280,
"uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392288256,
"size" : 16384,
"uuid" : "5973ec29-8c62-3285-97ee-5797aef28b1c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4400218112,
"size" : 114688,
"uuid" : "28e30bd8-e90f-3bee-a042-ce54d0f4f0ae",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4392894464,
"size" : 32768,
"uuid" : "0722922a-a378-3dee-b11b-96d1ae381b09",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4662722560,
"size" : 1818624,
"uuid" : "63d009e7-69a7-3c2e-8e6b-7c9ca477add1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4680843264,
"size" : 4800512,
"uuid" : "08a23d25-131f-3ed4-8ae5-cf04f4ee9d84",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4412211200,
"size" : 81920,
"uuid" : "a5714eba-2aad-3361-a268-b516bcc59414",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4656103424,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "e42bb390-a01c-3bb4-b37b-9c7d282bec92",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61439.1.1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4686544896,
"size" : 3112960,
"uuid" : "30fa1f27-f16b-3107-a7e0-821600076792",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4932501504,
"size" : 4849664,
"uuid" : "b16538d5-4c8e-357d-b89a-72f6f81a918d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5217746944,
"size" : 7127040,
"uuid" : "37bc5b3d-a43f-3325-bc8e-dd223a12dd85",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4657053696,
"size" : 557056,
"uuid" : "9cf9552c-7420-3c7f-b152-05c38fcdabfe",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4657758208,
"size" : 1605632,
"uuid" : "7878c801-838e-360a-ad2d-c91bbcf13592",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4656693248,
"size" : 81920,
"uuid" : "a98c3cc4-2bac-36d0-ab4a-317b1a06c9f7",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4662263808,
"size" : 98304,
"uuid" : "35c5feb6-d12a-32a6-8edd-725b0b5240e0",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4693524480,
"size" : 294912,
"uuid" : "5ff04ed2-db58-3350-bf0b-a87c61f2b561",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5728174080,
"size" : 181551104,
"uuid" : "0d838d1a-cf25-3467-baee-ca40f59e38ba",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5209325568,
"size" : 4505600,
"uuid" : "c8181217-1c26-3a33-ae2f-c3d63a1d3e35",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4694671360,
"size" : 425984,
"uuid" : "6ca50b1f-0fcd-3aa2-bcf0-debdd7e1e3de",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4662493184,
"size" : 98304,
"uuid" : "b641dc5f-172b-3ea6-898e-fe0a1e995a5c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlMeta.framework\/Versions\/A\/QtQmlMeta",
"name" : "QtQmlMeta"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4696064000,
"size" : 557056,
"uuid" : "c2e26d20-be37-38a8-8c67-2f8ec91440d5",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394287104,
"size" : 49152,
"uuid" : "94c15586-9bf3-3595-a65f-c0fb93e44599",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlWorkerScript.framework\/Versions\/A\/QtQmlWorkerScript",
"name" : "QtQmlWorkerScript"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4666720256,
"size" : 180224,
"uuid" : "85c5e18e-f120-3e5f-9524-f4f71b4c4058",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5226201088,
"size" : 4112384,
"uuid" : "d4b67177-0f9b-3ed0-bf06-05ab9b38340c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4960452608,
"size" : 1327104,
"uuid" : "26067012-fcf7-3da3-8169-252b66cbcb37",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4695310336,
"size" : 425984,
"uuid" : "cc6c9369-e9f9-31bc-b782-d8789d72cd86",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4666998784,
"size" : 81920,
"uuid" : "8f5db1a0-c448-3fe9-a20c-75210fd13f51",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4958715904,
"size" : 557056,
"uuid" : "ea27d884-c6f8-3bd6-9ad7-b2555067945d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4693016576,
"size" : 163840,
"uuid" : "7fbfef1d-2599-30e7-a597-16afe52f9233",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4393861120,
"size" : 32768,
"uuid" : "05c4bb42-1f60-3b81-9aac-f8ae0b494788",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4696817664,
"size" : 278528,
"uuid" : "e147a937-ff5c-3648-ab7b-d8b834e0a743",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4964220928,
"size" : 688128,
"uuid" : "7e60f9ac-4ed3-3c71-9933-7b053de2a9b0",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 4963254272,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 425984,
"uuid" : "14c19e9e-e7ca-3135-bdc0-10a0746490bb",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5926387712,
"CFBundleShortVersionString" : "320.35.5",
"CFBundleIdentifier" : "com.apple.AGXMetalG14G",
"size" : 7487488,
"uuid" : "eac6347f-1f26-322e-840a-c6d0a00399cb",
"path" : "\/System\/Library\/Extensions\/AGXMetalG14G.bundle\/Contents\/MacOS\/AGXMetalG14G",
"name" : "AGXMetalG14G",
"CFBundleVersion" : "320.35.5"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4965449728,
"size" : 147456,
"uuid" : "efeb64bf-d4f5-39f4-bde9-7f76de0fe223",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4965187584,
"size" : 16384,
"uuid" : "157e3710-caca-35b5-9fda-d1c4efc75429",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4964007936,
"size" : 65536,
"uuid" : "ff7c6b72-2303-3d40-a4fa-f3d840425be2",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4965269504,
"size" : 49152,
"uuid" : "0895ead1-fff8-3401-9c5c-5c4254ce969b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4965711872,
"size" : 98304,
"uuid" : "5c15959b-b36d-32f8-80b0-b0558dbb9fcc",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5565267968,
"size" : 344064,
"uuid" : "edcc52bf-058b-3550-8a40-7e432a5ee6bb",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5215371264,
"size" : 49152,
"uuid" : "651053b2-7ecc-3ea1-9b86-d9e6abfd212c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_asyncio.cpython-311-darwin.so",
"name" : "_asyncio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4965941248,
"size" : 16384,
"uuid" : "c2016f56-0f80-3f43-8019-54bf8a83f733",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942657024,
"size" : 1196032,
"uuid" : "e4a5e2b9-d698-3514-82ae-3ae03c7009eb",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5727600640,
"size" : 32768,
"uuid" : "bd5c5290-6de7-3280-aef7-33516048cfd4",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5215518720,
"size" : 16384,
"uuid" : "5d0d2f11-2b75-39a8-84f1-1edd861f86c0",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5727731712,
"size" : 196608,
"uuid" : "b4958ae9-ae3c-3c4e-9549-2f2246f498ea",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5941444608,
"size" : 425984,
"uuid" : "09999a6b-219e-30a9-bf46-4f5ebedf5b1c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5234147328,
"size" : 81920,
"uuid" : "c2dc724a-5d5f-3da9-9b57-a5c93f3ebb8e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5937922048,
"size" : 65536,
"uuid" : "a3056fb9-5ad7-3876-9000-ad477f48573a",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5941231616,
"size" : 16384,
"uuid" : "016a8a1e-f4d3-3921-97d2-cc007a2f018e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5234343936,
"size" : 32768,
"uuid" : "b8ee1e66-63be-38b6-90d4-ba69b0c6df63",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5949079552,
"size" : 491520,
"uuid" : "c220822e-8975-3b27-ba60-8c14828c67e1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942083584,
"size" : 32768,
"uuid" : "1246c3db-77f6-3a6f-9f74-e5458e9e5f0b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942198272,
"size" : 16384,
"uuid" : "d7f09611-5052-3c81-9703-da75c50a95b1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5959827456,
"size" : 4816896,
"uuid" : "f757a90d-8136-3c87-84e9-318405dc9d09",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/clipper_python.cpython-311-darwin.so",
"name" : "clipper_python.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5955354624,
"size" : 1507328,
"uuid" : "0fe4947d-2676-3720-89ac-b7cd6232e64b",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libclipper.dylib",
"name" : "libclipper.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5948571648,
"size" : 212992,
"uuid" : "2864282a-3512-3eb6-a5fb-24a7f2deb713",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libclipper_cx.dylib",
"name" : "libclipper_cx.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5952176128,
"size" : 655360,
"uuid" : "44b4ba4a-9c95-35d2-8257-accf04f4020c",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libmmdb2.dylib",
"name" : "libmmdb2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942280192,
"size" : 196608,
"uuid" : "02d023d0-95e9-34d2-a239-72c53ea5db46",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/libccp4.dylib",
"name" : "libccp4.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5941313536,
"size" : 32768,
"uuid" : "3e6d7aaf-c741-3684-b5f5-f27049e6bd7b",
"path" : "\/Users\/USER\/Library\/Application Support\/ChimeraX\/*\/lib_symmetry.dylib",
"name" : "lib_symmetry.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5942575104,
"size" : 16384,
"uuid" : "cd5f3f7c-54a3-322d-a180-6c7b94deed82",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5951848448,
"size" : 147456,
"uuid" : "d88c48e5-7624-307f-8706-358aa85387a5",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5953503232,
"size" : 49152,
"uuid" : "a0eb3bb7-e3c0-3e76-a804-6b717cc545a1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5959073792,
"size" : 196608,
"uuid" : "ba26bdfa-16a0-331b-8ccf-bccf2ee6f0d9",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5959385088,
"size" : 229376,
"uuid" : "fc7b18f0-c85c-3396-bd07-4a2dcf09af5c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5954863104,
"size" : 65536,
"uuid" : "93c61fa0-b608-3047-957b-aee1febd2d50",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5953634304,
"size" : 49152,
"uuid" : "8e8c5d0a-c910-3577-a5c5-f15a013d0c0a",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5966036992,
"size" : 131072,
"uuid" : "186b09bb-d974-32ab-94a8-1918ff802e3f",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017335296,
"size" : 163840,
"uuid" : "78ab6dee-103a-31de-bb4e-ea5e9b694cb0",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6008209408,
"size" : 32768,
"uuid" : "7c762164-23ce-3c84-a6f9-148cf4b35b4c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017024000,
"size" : 32768,
"uuid" : "ca8d12be-281a-3bfb-827e-dcbefe02e36c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6018138112,
"size" : 442368,
"uuid" : "611bf85a-f49f-30b8-bfaa-2296c8d6858f",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017122304,
"size" : 32768,
"uuid" : "50528921-30be-332b-ba36-97fa14e5f016",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017220608,
"size" : 32768,
"uuid" : "43c13ae2-8d0c-3cfe-a7d8-25d0cd0a37fe",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6018662400,
"size" : 442368,
"uuid" : "5e07d0b8-39ee-3386-8029-909968d14f61",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6019186688,
"size" : 409600,
"uuid" : "955f425c-8362-3c30-b14c-15b6a000f2b1",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017613824,
"size" : 32768,
"uuid" : "87575034-e142-39a9-8a02-79611bd204aa",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6020186112,
"size" : 327680,
"uuid" : "956ab00a-8b70-30e2-9a28-b405740e06d3",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017712128,
"size" : 32768,
"uuid" : "c88f9195-020d-331a-a949-c556961eab90",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6264176640,
"size" : 8257536,
"uuid" : "e7d10718-8d64-30b4-b031-937d128360ba",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017925120,
"size" : 49152,
"uuid" : "d04045ff-35fd-3483-8ef2-d3b2bf9ee79e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6017810432,
"size" : 32768,
"uuid" : "29f217be-3635-3333-8012-cbf62d2728a9",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6018039808,
"size" : 32768,
"uuid" : "da490f71-bc58-3340-b7b6-bc14f5f0cb7a",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6008111104,
"size" : 49152,
"uuid" : "083ec35f-5279-370a-bdb0-ad21cd9895af",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6026461184,
"size" : 1114112,
"uuid" : "5200c6a0-ccdb-3607-9947-1defdd6fb647",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6019825664,
"size" : 16384,
"uuid" : "683e7450-80b8-3ab0-9a20-9b02acf7a3fa",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6101417984,
"size" : 49152,
"uuid" : "cae81027-1380-36b4-a195-600642b08700",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/iconengines\/libqsvgicon.dylib",
"name" : "libqsvgicon.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6375931904,
"size" : 81920,
"uuid" : "95a80760-f95d-3f67-98ef-e126fdfec0e7",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6376112128,
"size" : 49152,
"uuid" : "69af4686-e656-310e-a4db-0a74f3b4d17b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6441713664,
"size" : 81920,
"uuid" : "ead0ea09-d2eb-3b02-a65b-60f085a13fe2",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12961218560,
"size" : 163840,
"uuid" : "cde92a72-b5bf-3f90-95dc-727086bd17db",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6441861120,
"size" : 131072,
"uuid" : "39a94da0-87b0-3f22-93f9-7824c575742c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13020184576,
"size" : 131072,
"uuid" : "b3d610f4-506d-3e12-94f4-541df1bc0fff",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13020971008,
"size" : 376832,
"uuid" : "449dd33a-e724-335b-9ef9-bf9b2730bf05",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13022347264,
"size" : 688128,
"uuid" : "d800b974-86b2-386e-be4e-8ac8e22fd3cd",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13023166464,
"size" : 540672,
"uuid" : "dbec2c14-6e39-3319-a2c0-3606ed70093e",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13023805440,
"size" : 606208,
"uuid" : "78bac0b1-a0df-3e6e-b906-cbc961cdb354",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13020413952,
"size" : 114688,
"uuid" : "6e171b67-e226-3c3e-bc7c-5bd522f28494",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13021528064,
"size" : 163840,
"uuid" : "8c16ecf4-eb91-3dbb-8543-fe43fcd625a5",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13021822976,
"size" : 262144,
"uuid" : "37441cb2-0945-3607-9e47-10990b396b4c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6441566208,
"size" : 16384,
"uuid" : "9ee33d4a-150e-3574-9258-2061bb970c27",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12970393600,
"size" : 32768,
"uuid" : "d197680c-26b9-3292-85bc-f61af0ff34bb",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13028360192,
"size" : 737280,
"uuid" : "3064ecb2-3709-3d94-8d92-ed5e1a3b6f5c",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGL.abi3.so",
"name" : "QtOpenGL.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 12961464320,
"size" : 49152,
"uuid" : "41d9a4a9-c948-34f9-b755-29244498ec4d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtOpenGLWidgets.abi3.so",
"name" : "QtOpenGLWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13020725248,
"size" : 49152,
"uuid" : "c0bef4c8-6fde-3bf3-bb63-abf57c774fb2",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets",
"name" : "QtOpenGLWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6098681856,
"size" : 81920,
"uuid" : "a4c950fa-c0ff-3746-ba82-bdd5ee9b3c8b",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6098534400,
"size" : 32768,
"uuid" : "1813f6a2-fc9e-3999-bf3d-34b8ab6fe1a7",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6100156416,
"size" : 458752,
"uuid" : "936ee0c5-0468-3f0b-8195-0f29ebe17a2d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13057310720,
"size" : 442368,
"uuid" : "c9368a8d-c938-3830-99ea-6e484cbc83da",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6100779008,
"size" : 180224,
"uuid" : "f1b6d70b-1d1d-3836-962d-639f51602eaf",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 13070876672,
"size" : 3833856,
"uuid" : "bd3bfa3e-c1d4-3ee2-b082-3b38ca7693ca",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6099910656,
"size" : 131072,
"uuid" : "c9441298-6125-3b5c-8f21-032910e5184d",
"path" : "\/Applications\/ChimeraX-1.10.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6625366016,
"size" : 241656,
"uuid" : "616eb42e-c350-321e-8002-fb82bd999276",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6625607680,
"size" : 53248,
"uuid" : "d09f4078-adad-3dd0-b17b-ce0142887b28",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6624141312,
"size" : 532476,
"uuid" : "a63f0ef9-59f1-3976-8a7e-2037cd50c605",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6625837056,
"size" : 32740,
"uuid" : "3fac373b-5c41-3c83-8f9f-c9e781e887da",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6923587584,
"size" : 71304,
"uuid" : "e38158d5-4f77-3ded-beb5-6e9cb165117c",
"path" : "\/usr\/lib\/libffi.dylib",
"name" : "libffi.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6626066432,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5206016,
"uuid" : "1ad672c1-da68-3367-b947-93ae47652366",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3038.1.403"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6814453760,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3178496,
"uuid" : "66acb183-62b9-3856-82a9-07c05dc29bcc",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6688481280,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 20795392,
"uuid" : "eb0e3194-641d-38a6-887c-d03042e0e85c",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2566"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6621929472,
"size" : 534116,
"uuid" : "40bedd20-da23-3b70-a9c2-a1c68a738762",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6644809728,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 14999552,
"uuid" : "45f61a5f-e825-33b6-94b9-3e0b02aa3ff3",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "3038.1.403"
}
],
"sharedCache" : {
"base" : 6621118464,
"size" : 4728750080,
"uuid" : "a02dcfba-3bda-3ca6-8a42-12f00a4d75d3"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.8G resident=0K(0%) swapped_out_or_unallocated=1.8G(100%)\nWritable regions: Total=2.1G written=1205K(0%) resident=1205K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG image 224K 11 \nColorSync 656K 30 \nCoreAnimation 944K 59 \nCoreGraphics 32K 2 \nCoreUI image data 2720K 19 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 1.5G 79 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 256K 3 \nSTACK GUARD 672K 42 \nStack 217.9M 43 \nStack Guard 56.0M 1 \nVM_ALLOCATE 187.8M 98 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__AUTH 4914K 649 \n__AUTH_CONST 68.7M 897 \n__CTF 824 1 \n__DATA 34.8M 1039 \n__DATA_CONST 34.2M 1054 \n__DATA_DIRTY 2761K 339 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 615.2M 153 \n__OBJC_RW 2353K 1 \n__TEXT 1.2G 1072 \n__TPRO_CONST 272K 2 \ndyld private memory 80K 2 \nmapped file 272.3M 62 \nowned unmapped memory 1152K 1 \npage table in kernel 1205K 1 \nshared memory 3712K 26 \n=========== ======= ======= \nTOTAL 4.4G 5716 \nTOTAL, minus reserved VM space 4.2G 5716 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "9a6a4c853e1d45907f3243f97699ab8d630c58ce",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64628732bf2f5257dedc8988",
"factorPackIds" : {
},
"deploymentId" : 240000001
},
{
"rolloutId" : "67648e5334a82511f4acf879",
"factorPackIds" : {
},
"deploymentId" : 240000008
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
> open
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2hf0_cavity_KVFinder.cxs
Populating font family aliases took 200 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
Log from Fri Aug 1 14:06:38 2025UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
> open
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
Log from Fri Aug 1 09:32:20 2025UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
> open
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
Log from Thu Jul 31 17:28:37 2025UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> select /A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> hide sel atoms
> ~label (#!1 & sel) residues
> ~label (#!1 & sel) atoms
> label (#!1 & sel) atoms attribute bfactor
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2x1d_forcomp.pdb
> format pdb
2x1d_forcomp.pdb title:
The crystal structure of mature acyl coenzyme A:isopenicillin N
acyltransferase from penicillium chrysogenum [more info...]
Chain information for 2x1d_forcomp.pdb #2
---
Chain | Description
B | acyl-coenzyme
Non-standard residues in 2x1d_forcomp.pdb #2
---
CSD — (CSD)
53 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> hide atoms
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with 2x1d_forcomp.pdb, chain B (#2),
sequence alignment score = 95.7
RMSD between 38 pruned atom pairs is 1.061 angstroms; (across all 226 pairs:
6.657)
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select
> #1/A:3-8,18-29,34-40,46-51,62-65,69-75,119-125,133-138,146-147,151-155,230-231,234-245,249-257,265-273
768 atoms, 773 bonds, 94 residues, 1 model selected
> select clear
[Repeated 1 time(s)]
> ~label #1-2 residues
> label delete pseudobonds
> select #1/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gray
> ui tool show "Color Actions"
> color sel light gray
> select #2/B
2257 atoms, 2041 bonds, 514 residues, 1 model selected
> color sel light green
[Repeated 1 time(s)]
> color sel pale green
> color sel light green
> select #1/A:3
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> select #1/A:3
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/B:103
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> ui tool show "Modeller Comparative"
Populating font family aliases took 203 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/B
Alignment identifier is 2/B
> ui tool show "Modeller Comparative"
> modeller comparative 1/A:1 2/B:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
Webservices job id: COBSH51IVJMNC5Z0
> ui tool show "Modeller Comparative"
> modeller comparative 1/A:1 2/B:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
Webservices job id: 36S2GIWY4QPCD7RA
Webservices job finished: COBSH51IVJMNC5Z0
Modeller job (ID COBSH51IVJMNC5Z0) finished
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1433.1
RMSD between 272 pruned atom pairs is 0.155 angstroms; (across all 272 pairs:
0.155)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1424.1
RMSD between 272 pruned atom pairs is 0.148 angstroms; (across all 272 pairs:
0.148)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1426.5
RMSD between 272 pruned atom pairs is 0.148 angstroms; (across all 272 pairs:
0.148)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1422.3
RMSD between 272 pruned atom pairs is 0.144 angstroms; (across all 272 pairs:
0.144)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1433.7
RMSD between 272 pruned atom pairs is 0.166 angstroms; (across all 272 pairs:
0.166)
Associated target chain A to chain A with 0 mismatches
[Repeated 4 time(s)] Chain information for target
---
Chain | Description
3.1/A 3.2/A 3.3/A 3.4/A 3.5/A | No description available
Webservices job finished: 36S2GIWY4QPCD7RA
Modeller job (ID 36S2GIWY4QPCD7RA) finished
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1433.1
RMSD between 272 pruned atom pairs is 0.155 angstroms; (across all 272 pairs:
0.155)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1424.1
RMSD between 272 pruned atom pairs is 0.148 angstroms; (across all 272 pairs:
0.148)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1426.5
RMSD between 272 pruned atom pairs is 0.148 angstroms; (across all 272 pairs:
0.148)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1422.3
RMSD between 272 pruned atom pairs is 0.144 angstroms; (across all 272 pairs:
0.144)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with target, chain A (#), sequence
alignment score = 1433.7
RMSD between 272 pruned atom pairs is 0.166 angstroms; (across all 272 pairs:
0.166)
Associated target chain A to chain A with 0 mismatches
[Repeated 4 time(s)] Chain information for target
---
Chain | Description
4.1/A 4.2/A 4.3/A 4.4/A 4.5/A | No description available
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select
> #2/B:104-108,115-123,130-135,143-148,155-158,163-167,211-216,221-227,230-234,241-244,311-320,325-330,338-343
647 atoms, 649 bonds, 79 residues, 1 model selected
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:122
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/B:122
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #2/B:122-123
22 atoms, 23 bonds, 2 residues, 1 model selected
> select #2/B:120,122-123
36 atoms, 38 bonds, 3 residues, 1 model selected
> select #2/B:120,122-123,166
48 atoms, 50 bonds, 4 residues, 1 model selected
> show sel atoms
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label height 2
> label height 1.5
> label height 1.2
[Repeated 1 time(s)]
> select #3.1/A#3.2/A#3.3/A#3.4/A#3.5/A#4.1/A#4.2/A#4.3/A#4.4/A#4.5/A
21780 atoms, 22270 bonds, 2760 residues, 10 models selected
> delete atoms sel
> delete bonds sel
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:120
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:120,122
25 atoms, 26 bonds, 2 residues, 1 model selected
> select #2/B:120,122-123
36 atoms, 38 bonds, 3 residues, 1 model selected
> select #2/B:120,122-123,166
48 atoms, 50 bonds, 4 residues, 1 model selected
> ui tool show "Color Actions"
[Repeated 1 time(s)]
> color sel byhetero
> color sel byelement
> color sel byhetero
[Repeated 1 time(s)]
> undo
[Repeated 3 time(s)]
> color sel byhetero
> select #1/A:26
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:26
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:26,28
20 atoms, 18 bonds, 2 residues, 1 model selected
> select #1/A:26,28-29
31 atoms, 30 bonds, 3 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47
39 atoms, 37 bonds, 4 residues, 1 model selected
> select #1/A:26,28-29,47,73
47 atoms, 44 bonds, 5 residues, 1 model selected
> select #1/A:26,28-29,47,73
47 atoms, 44 bonds, 5 residues, 1 model selected
> select #1/A:26,28-29,47,73
47 atoms, 44 bonds, 5 residues, 1 model selected
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:26
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:26
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/A:26,28
20 atoms, 18 bonds, 2 residues, 1 model selected
> select #1/A:26,28-29
31 atoms, 30 bonds, 3 residues, 1 model selected
> select #1/A:26,28-29,73
39 atoms, 37 bonds, 4 residues, 1 model selected
> show sel atoms
> ui tool show "Color Actions"
> color sel byhetero
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label height 1.2
[Repeated 2 time(s)]
> color sel red target l
> select clear
> label height 1
[Repeated 1 time(s)]
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_2x1d_bindingsites_compX.cxs
> cartoon style width 1.2 thickness 0.2
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #2/B:103
8 atoms, 7 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> cofr sel
> view sel
[Repeated 1 time(s)]
> ui tool show "Selection Inspector"
> ui tool show "Side View"
> select clear
> view
[Repeated 1 time(s)]
> label height 1
> label height 0.5
> label height 0.6
[Repeated 1 time(s)]
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_2x1d_bindingsites_compX.cxs
[Repeated 2 time(s)]
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2hf0_forcomp.pdb
2hf0_forcomp.pdb title:
Bifidobacterium longum bile salt hydrolase [more info...]
Chain information for 2hf0_forcomp.pdb #1
---
Chain | Description | UniProt
B | bile salt hydrolase | Q9KK62_BIFLO 1-316
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #2
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #2
---
SO4 — sulfate ion
> label delete pseudobonds
> cartoon style width 1.2 thickness 0.2
> hide atoms
> select #2/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> ui tool show "Color Actions"
> color sel light gray target l
[Repeated 1 time(s)]
> color sel light gray
> color sel gray
> color sel light gray
> select #1/B
2594 atoms, 2528 bonds, 447 residues, 1 model selected
> color sel cyan
> select #2/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> color sel gray
> select clear
> select #2/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> color (#!2 & sel) light gray
> select clear
> select #2/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> color (#!2 & sel) gray
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1/B
Alignment identifier is 1/B
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> color sel byhetero
> select #1/B:1
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/B:1
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #2/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select clear
> ui tool show "Show Sequence Viewer"
> select #1/B:17
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/B:17
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #1/B:17,20
19 atoms, 17 bonds, 2 residues, 1 model selected
> select #1/B:17,20,81
27 atoms, 24 bonds, 3 residues, 1 model selected
> select #1/B:17,20,81,172
35 atoms, 31 bonds, 4 residues, 1 model selected
> select #1/B:17,20,81,172,225
46 atoms, 41 bonds, 5 residues, 1 model selected
> show sel atoms
> color sel byhetero target l
[Repeated 1 time(s)]
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #2/A:26
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/A:26-27
19 atoms, 18 bonds, 2 residues, 1 model selected
> select #2/A:26-27,75
27 atoms, 25 bonds, 3 residues, 1 model selected
> select #2/A:26-27,75,157
35 atoms, 32 bonds, 4 residues, 1 model selected
> select #2/A:26-27,75,157,166
44 atoms, 40 bonds, 5 residues, 1 model selected
> show sel atoms
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> label height 0.5
> select clear
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_2hf0_bindingsites_compX.cxs
> ui tool show "Side View"
[Repeated 1 time(s)]
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_2hf0_bindingsites_compX.cxs
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> cartoon style width 1.2 thickness 0.2
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (388 )
Cannot find LINK/SSBOND residue NAG (1 )
Cannot find LINK/SSBOND residue NAG (404 )
9 messages similar to the above omitted
5u7z_forcomp.pdb title:
Human acid ceramidase (ASAH1, acdase) self-activated [more info...]
Chain information for 5u7z_forcomp.pdb #2
---
Chain | Description | UniProt
B | acid ceramidase | A8K0B6_HUMAN 141-395
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 8sv7A.pdb, chain A (#1) with 5u7z_forcomp.pdb, chain B (#2),
sequence alignment score = 90.9
RMSD between 56 pruned atom pairs is 1.179 angstroms; (across all 214 pairs:
7.586)
> cartoon style width 1.2 thickness 0.2
> label delete pseudobonds
> hide atoms
> select #1/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gray target l
[Repeated 3 time(s)]
> color sel gray
> select #2/B
4071 atoms, 4107 bonds, 266 residues, 1 model selected
> ui tool show "Color Actions"
> color sel brown
> color sel light salmon
> color sel salmon
> select clear
> select #2/B
4071 atoms, 4107 bonds, 266 residues, 1 model selected
> color sel light salmon
> select clear
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/B
Alignment identifier is 2/B
> select #2/B:231
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:231-240
157 atoms, 159 bonds, 10 residues, 1 model selected
> select #2/B:163
20 atoms, 20 bonds, 1 residue, 1 model selected
> select #2/B:163
20 atoms, 20 bonds, 1 residue, 1 model selected
> select #2/B:163,165
36 atoms, 35 bonds, 2 residues, 1 model selected
> select #2/B:163,165-166
56 atoms, 56 bonds, 3 residues, 1 model selected
> select #2/B:163,165-166,227
76 atoms, 76 bonds, 4 residues, 1 model selected
> select #2/B:163,165-166,227,328
96 atoms, 96 bonds, 5 residues, 1 model selected
> select #2/B:163,165-166,227,328,367
115 atoms, 114 bonds, 6 residues, 1 model selected
> select #2/B:163,165-166,227,328,367,395
139 atoms, 139 bonds, 7 residues, 1 model selected
> show sel atoms
> label sel text "{0.name} {0.number}{0.insertion_code}"
> ui tool show "Color Actions"
> color sel byhetero
> color sel byelement
> color sel byhetero
[Repeated 1 time(s)]
> undo
[Repeated 2 time(s)]
> select H
2017 atoms, 253 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #2/B:143
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/B:143
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel yellow
> ui tool show "Color Actions"
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #1/A:28
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:28
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:28,78
18 atoms, 16 bonds, 2 residues, 1 model selected
> select #1/A:28,78,235
22 atoms, 19 bonds, 3 residues, 1 model selected
> show sel atoms
> ui tool show "Color Actions"
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #1/A:224
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero target l
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #1/A:77
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
[Repeated 2 time(s)]
> select #1/A:76
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:77
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero target l
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #1/A:209
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:210
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:209
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:216
12 atoms, 12 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:214
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:215
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:213
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:209
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:209
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:210
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #1/A:209
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero
> color sel yellow
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select clear
> ui tool show "Side View"
> select #1/A:78
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:77
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:78
9 atoms, 8 bonds, 1 residue, 1 model selected
> hide sel atoms
> ~label sel residues
> select clear
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_5u7z_bindingsites_compX.cxs
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue ASN (37 )
Cannot find LINK/SSBOND residue ASN (107 )
4 messages similar to the above omitted
6dxx_forcomp.pdb title:
Human N-acylethanolamine-hydrolyzing acid amidase (naaa) In complex with non-
covalent benzothiazole-piperazine inhibitor ARN19702, In presence of triton
X-100 [more info...]
Chain information for 6dxx_forcomp.pdb #2
---
Chain | Description | UniProt
B | N-acylethanolamine-hydrolyzing acid amidase subunit β | NAAA_HUMAN 126-359
Non-standard residues in 6dxx_forcomp.pdb #2
---
CL — chloride ion
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)
WTF —
[2-(ethylsulfonyl)phenyl][(2S)-4-(6-fluoro-1,3-benzothiazol-2-yl)-2-methylpiperazin-1-yl]methanone
> hide atoms
> label delete pseudobonds
> cartoon style width 1.2 thickness 0.2
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #2/B
Alignment identifier is 2/B
> select #2/B:200
24 atoms, 25 bonds, 1 residue, 1 model selected
> select #2/B:200-202
72 atoms, 77 bonds, 3 residues, 1 model selected
> show sel atoms
> select #2/B
3780 atoms, 3773 bonds, 296 residues, 1 model selected
> select H
1836 atoms, 233 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #1/A
2401 atoms, 2178 bonds, 1 pseudobond, 543 residues, 2 models selected
> ui tool show "Color Actions"
> color sel gray target l
> color sel gray
> select #2/B
1944 atoms, 1937 bonds, 296 residues, 1 model selected
> color sel yellow
> color sel gold
> select clear
> select #2/B:202-203
23 atoms, 24 bonds, 2 residues, 1 model selected
> select #2/B:200-203
51 atoms, 56 bonds, 4 residues, 1 model selected
> select #2/B:202
14 atoms, 15 bonds, 1 residue, 1 model selected
> select #2/B:200-202
42 atoms, 47 bonds, 3 residues, 1 model selected
> show sel atoms
> hide sel atoms
> show sel atoms
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select #1/A:79-80
12 atoms, 12 bonds, 2 residues, 1 model selected
> select #1/A:79-84
51 atoms, 53 bonds, 6 residues, 1 model selected
> show sel atoms
> ui tool show "Color Actions"
> color sel byhetero
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #1/A:3
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/B:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/B:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> label sel text "{0.name} {0.number}{0.insertion_code}"
> color sel red target l
> select #2/B:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/B:126
6 atoms, 5 bonds, 1 residue, 1 model selected
> show sel atoms
> label sel text "{0.name} {0.number}{0.insertion_code}"
> select clear
> label height 0.5
> label height 1
> label height 0.6
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
> ui tool show "Side View"
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
——— End of log from Thu Jul 31 17:28:37 2025 ———
> view name session-start
opened ChimeraX session
> ui tool show "Side View"
> label height 0.6
[Repeated 1 time(s)]
> label height 0.7
[Repeated 1 time(s)]
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Figures/Tango2_6dxx_comp_closeup.tif
> width 2500 height 1149 supersample 3
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
——— End of log from Fri Aug 1 09:32:20 2025 ———
> view name session-start
opened ChimeraX session
> label height 0.8
[Repeated 1 time(s)]
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Figures/Tango2_6dxx_comp_closeup.tif
> width 3000 height 1379 supersample 3
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_6dxx_bindingsites_compX.cxs
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2x1d_forcomp.pdb
> format pdb
2x1d_forcomp.pdb title:
The crystal structure of mature acyl coenzyme A:isopenicillin N
acyltransferase from penicillium chrysogenum [more info...]
Chain information for 2x1d_forcomp.pdb #1
---
Chain | Description
B | acyl-coenzyme
Non-standard residues in 2x1d_forcomp.pdb #1
---
CSD — (CSD)
53 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show "Find Cavities"
> kvfinder
11 cavities found for 2x1d_forcomp.pdb #1
2x1d_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.3 | | 180.36 | 150.86 | 835 | 4.02 | 1.19
1.1.8 | | 50.76 | 64.27 | 235 | 4.37 | 2.06
1.1.7 | | 38.45 | 59.28 | 178 | 1.2 | 0.36
1.1.6 | | 32.18 | 49.97 | 149 | 3.06 | 1.04
1.1.10 | | 29.16 | 43.1 | 135 | 1.7 | 0.5
1.1.1 | | 28.94 | 52.49 | 134 | 0 | 0
1.1.9 | | 28.08 | 38.06 | 130 | 1.9 | 0.8
1.1.2 | | 25.7 | 37.43 | 119 | 2.16 | 0.62
1.1.4 | | 8.86 | 17.04 | 41 | 1.34 | 0.47
1.1.11 | | 8.42 | 16.5 | 39 | 0.6 | 0.15
1.1.5 | | 6.91 | 16.05 | 32 | 1.2 | 0.41
Populating font family aliases took 198 ms. Replace uses of missing font
family "Times" with one that exists to avoid this cost.
> kvfinder
11 cavities found for 2x1d_forcomp.pdb #1
2x1d_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.3 | | 180.36 | 150.86 | 835 | 4.02 | 1.19
1.1.8 | | 50.76 | 64.27 | 235 | 4.37 | 2.06
1.1.7 | | 38.45 | 59.28 | 178 | 1.2 | 0.36
1.1.6 | | 32.18 | 49.97 | 149 | 3.06 | 1.04
1.1.10 | | 29.16 | 43.1 | 135 | 1.7 | 0.5
1.1.1 | | 28.94 | 52.49 | 134 | 0 | 0
1.1.9 | | 28.08 | 38.06 | 130 | 1.9 | 0.8
1.1.2 | | 25.7 | 37.43 | 119 | 2.16 | 0.62
1.1.4 | | 8.86 | 17.04 | 41 | 1.34 | 0.47
1.1.11 | | 8.42 | 16.5 | 39 | 0.6 | 0.15
1.1.5 | | 6.91 | 16.05 | 32 | 1.2 | 0.41
> color byattribute a:kvfinder_depth #1.1.2-11
1893 atoms, 10 residues, atom kvfinder_depth range 0 to 4.37
> view #1.1.3 @ zoom 0.75
moved plane near -42.45807919011678 [ 0.94629453 -0.02589495 -0.32226715]
moved plane far -42.45807919011678 [ 0.94629453 -0.02589495 -0.32226715]
> surface #1.1.1-11 transparency 50
> color #1.1.1-11 fromatoms transparency 50
> ~surface #1.1
> surface #1.1.3
> view #!1.1.8 @ zoom 0.75
moved plane near -27.56513770867785 [0.89256955 0.25878313 0.36925723]
moved plane far -27.56513770867785 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.8
> view #!1.1.7 @ zoom 0.75
moved plane near -32.03756358433146 [0.89256955 0.25878313 0.36925723]
moved plane far -32.03756358433146 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.7
> view #!1.1.6 @ zoom 0.75
moved plane near -23.916081462921742 [0.89256955 0.25878313 0.36925723]
moved plane far -23.916081462921742 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.6
> view #!1.1.10 @ zoom 0.75
moved plane near -30.07313029072019 [0.89256955 0.25878313 0.36925723]
moved plane far -30.07313029072019 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.10
> view #!1.1.1 @ zoom 0.75
moved plane near -16.12116160744664 [0.89256955 0.25878313 0.36925723]
moved plane far -16.12116160744664 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.1
> view #!1.1.9 @ zoom 0.75
moved plane near -26.497108456846878 [0.89256955 0.25878313 0.36925723]
moved plane far -26.497108456846878 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.9
> view #!1.1.2 @ zoom 0.75
moved plane near -22.815032955737227 [0.89256955 0.25878313 0.36925723]
moved plane far -22.815032955737227 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.2
> view #!1.1.3 @ zoom 0.75
moved plane near -39.23877516315216 [0.89256955 0.25878313 0.36925723]
moved plane far -39.23877516315216 [0.89256955 0.25878313 0.36925723]
> ~surface #1.1
> surface #!1.1.3
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> cartoon style width 1.2 thickness 0.2
> label delete pseudobonds
> hide atoms
> ui tool show "Find Cavities"
> kvfinder
14 cavities found for 8sv7A.pdb #1
8sv7A.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.10 | | 956.45 | 698.59 | 4428 | 15.34 | 4.44
1.2.13 | | 103.03 | 120.16 | 477 | 4.57 | 1.68
1.2.5 | | 47.95 | 72.39 | 222 | 0 | 0
1.2.11 | | 35.64 | 53.06 | 165 | 0 | 0
1.2.4 | | 29.81 | 41.18 | 138 | 2.16 | 0.58
1.2.1 | | 27.43 | 55.27 | 127 | 0 | 0
1.2.6 | | 25.49 | 40.78 | 118 | 0 | 0
1.2.9 | | 15.34 | 31.68 | 71 | 0.85 | 0.19
1.2.3 | | 14.04 | 19.78 | 65 | 1.04 | 0.26
1.2.12 | | 14.04 | 21.78 | 65 | 1.34 | 0.37
1.2.8 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.2 | | 11.88 | 24.03 | 55 | 0.6 | 0.17
1.2.7 | | 11.02 | 19.4 | 51 | 1.2 | 0.32
> view #1.2.10 @ zoom 0.75
moved plane near -37.24658241073715 [-0. -0. -1.]
moved plane far -37.24658241073715 [-0. -0. -1.]
> surface #1.2.1-14 transparency 50
> ~surface #1.2
> surface #1.2.10
> select #!1.2.10
4428 atoms, 1 residue, 1 model selected
> ~select #!1.2.10
1 model selected
> select #!1 & (#!1.2.10 @ ~select #!1 & (#!1.2.10 @ show
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> hide
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> color byattribute a:kvfinder_depth #!1.2.2-4,7,9-10,12-13
5350 atoms, 8 residues, 8 surfaces, atom kvfinder_depth range 0 to 15.3
> ui tool show "Render/Select by Attribute"
> view #!1.2.13 @ zoom 0.75
moved plane near -21.28794025080688 [-0.90926844 -0.24612183 0.3356411 ]
moved plane far -21.28794025080688 [-0.90926844 -0.24612183 0.3356411 ]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.10 @ zoom 0.75
moved plane near -40.60877178983332 [-0.71692665 0.28784738 -0.63494887]
moved plane far -40.60877178983332 [-0.71692665 0.28784738 -0.63494887]
> ~surface #1.2
> surface #!1.2.10
> ui tool show "Surface Color"
No map chosen for coloring
[Repeated 5 time(s)]
> color single #1.2.10.1
No map chosen for coloring
[Repeated 5 time(s)]
> color #1.2.10 #c00d2b
No map chosen for coloring
[Repeated 4 time(s)]
> color single #1.2.10.1
No map chosen for coloring
[Repeated 3 time(s)]
> select #!1.2.10
4428 atoms, 1 residue, 1 model selected
> ~select #!1.2.10
1 model selected
> show
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> hide
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> show
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> hide
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> select #!1 & (#!1.2.10 @ ~select #!1 & (#!1.2.10 @ select #!1.2.10
4428 atoms, 1 residue, 1 model selected
> ~select #!1.2.10
1 model selected
> view #!1.2.13 @ zoom 0.75
moved plane near -17.278803539624093 [-0.16973462 0.29972305 -0.93880576]
moved plane far -17.278803539624093 [-0.16973462 0.29972305 -0.93880576]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.5 @ zoom 0.75
moved plane near -12.381815063062106 [-0.16973462 0.29972305 -0.93880576]
moved plane far -12.381815063062106 [-0.16973462 0.29972305 -0.93880576]
> ~surface #1.2
> surface #!1.2.5
> view #!1.2.10 @ zoom 0.75
moved plane near -25.645900495557516 [-0.16973462 0.29972305 -0.93880576]
moved plane far -25.645900495557516 [-0.16973462 0.29972305 -0.93880576]
> ~surface #1.2
> surface #!1.2.10
> ui tool show "Surface Color"
> color radial #1.2.2.1 palette #ff0000:#ffffff:#0000ff
> color radial #1.2.10.1 palette 32.53,#ff0000:34.32,#ffffff:36.12,#0000ff
No map chosen for coloring
[Repeated 1 time(s)]
> select #!1 & (#!1.2.10 @ ~select #!1 & (#!1.2.10 @ show
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> hide
> #!1/A:2,4,24-29,32,51,56,59-62,72-83,85-90,117,157,216,220,224,234,238-240
> select #!1 & (#!1.2.10 @ show sel atoms
> surface sel
> ui tool show "Surface Color"
No map chosen for coloring
[Repeated 2 time(s)]
> ui tool show "Surface Color"
> color radial #1.3 palette 32.53,#ff0000:34.32,#ffffff:36.12,#0000ff
> ui tool show "Find Cavities"
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2x1d_forcomp.pdb
> format pdb
2x1d_forcomp.pdb title:
The crystal structure of mature acyl coenzyme A:isopenicillin N
acyltransferase from penicillium chrysogenum [more info...]
Chain information for 2x1d_forcomp.pdb #1
---
Chain | Description
B | acyl-coenzyme
Non-standard residues in 2x1d_forcomp.pdb #1
---
CSD — (CSD)
53 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show "Find Cavities"
> kvfinder
11 cavities found for 2x1d_forcomp.pdb #1
2x1d_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.3 | | 180.36 | 150.86 | 835 | 4.02 | 1.19
1.1.8 | | 50.76 | 64.27 | 235 | 4.37 | 2.06
1.1.7 | | 38.45 | 59.28 | 178 | 1.2 | 0.36
1.1.6 | | 32.18 | 49.97 | 149 | 3.06 | 1.04
1.1.10 | | 29.16 | 43.1 | 135 | 1.7 | 0.5
1.1.1 | | 28.94 | 52.49 | 134 | 0 | 0
1.1.9 | | 28.08 | 38.06 | 130 | 1.9 | 0.8
1.1.2 | | 25.7 | 37.43 | 119 | 2.16 | 0.62
1.1.4 | | 8.86 | 17.04 | 41 | 1.34 | 0.47
1.1.11 | | 8.42 | 16.5 | 39 | 0.6 | 0.15
1.1.5 | | 6.91 | 16.05 | 32 | 1.2 | 0.41
> view #1.1.3 @ zoom 0.75
moved plane near -20.27633690049001 [ 0.00258366 0.97721708 -0.21222655]
moved plane far -20.27633690049001 [ 0.00258366 0.97721708 -0.21222655]
> surface #1.1.1-11 transparency 50
> ~surface #1.1
> surface #1.1.3
> select #!1 & (#1.1.3 @ close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2hf0_forcomp.pdb
> format pdb
2hf0_forcomp.pdb title:
Bifidobacterium longum bile salt hydrolase [more info...]
Chain information for 2hf0_forcomp.pdb #1
---
Chain | Description | UniProt
B | bile salt hydrolase | Q9KK62_BIFLO 1-316
> ui tool show "Find Cavities"
> kvfinder
14 cavities found for 2hf0_forcomp.pdb #1
2hf0_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.11 | | 899.21 | 605.61 | 4163 | 9.62 | 2.96
1.1.10 | | 60.7 | 72.68 | 281 | 4.2 | 1.33
1.1.14 | | 56.81 | 79.96 | 263 | 1.8 | 0.45
1.1.9 | | 55.3 | 76.96 | 256 | 2.47 | 0.6
1.1.8 | | 29.59 | 51.3 | 137 | 0 | 0
1.1.7 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.2 | | 18.36 | 33.35 | 85 | 2.16 | 0.79
1.1.5 | | 17.93 | 28.1 | 83 | 1.8 | 0.71
1.1.13 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.3 | | 16.42 | 28.26 | 76 | 1.2 | 0.28
1.1.4 | | 12.96 | 17.76 | 60 | 1.34 | 0.42
1.1.12 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.6 | | 9.94 | 17.92 | 46 | 0.85 | 0.24
1.1.1 | | 9.72 | 19.27 | 45 | 0.6 | 0.11
> view #1.1.11 @ zoom 0.75
moved plane near -33.222142626207955 [-0.91731221 0.33896845 0.20889877]
moved plane far -33.222142626207955 [-0.91731221 0.33896845 0.20889877]
> surface #1.1.1-14 transparency 50
> ~surface #1.1
> surface #1.1.11
> select #!1 & (#1.1.11 @ close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
> format pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (388 )
Cannot find LINK/SSBOND residue NAG (1 )
Cannot find LINK/SSBOND residue NAG (404 )
9 messages similar to the above omitted
5u7z_forcomp.pdb title:
Human acid ceramidase (ASAH1, acdase) self-activated [more info...]
Chain information for 5u7z_forcomp.pdb #1
---
Chain | Description | UniProt
B | acid ceramidase | A8K0B6_HUMAN 141-395
> ui tool show "Find Cavities"
> kvfinder
13 cavities found for 5u7z_forcomp.pdb #1
5u7z_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.5 | | 362.88 | 334.81 | 1680 | 6.18 | 1.73
1.1.13 | | 106.92 | 109.88 | 495 | 3.7 | 1.66
1.1.3 | | 80.35 | 122.76 | 372 | 7.22 | 3.63
1.1.10 | | 74.52 | 99.77 | 345 | 5.16 | 2.56
1.1.1 | | 55.51 | 68.62 | 257 | 3.55 | 1.5
1.1.11 | | 42.98 | 52.99 | 199 | 1.8 | 0.74
1.1.9 | | 36.07 | 59.9 | 167 | 0 | 0
1.1.6 | | 28.08 | 54.76 | 130 | 4.84 | 3
1.1.8 | | 23.11 | 35.28 | 107 | 1.8 | 0.54
1.1.2 | | 18.58 | 27.35 | 86 | 2.4 | 0.85
1.1.7 | | 8.42 | 15.83 | 39 | 1.2 | 0.33
1.1.4 | | 7.34 | 13.6 | 34 | 0.6 | 0.19
1.1.12 | | 7.13 | 14.97 | 33 | 0.6 | 0.2
> view #1.1.5 @ zoom 0.75
moved plane near -26.197777215314204 [-0. -0. -1.]
moved plane far -26.197777215314204 [-0. -0. -1.]
> surface #1.1.1-13 transparency 50
> ~surface #1.1
> surface #1.1.5
> select #!1 & (#1.1.5 @ close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
> format pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue ASN (37 )
Cannot find LINK/SSBOND residue ASN (107 )
4 messages similar to the above omitted
6dxx_forcomp.pdb title:
Human N-acylethanolamine-hydrolyzing acid amidase (naaa) In complex with non-
covalent benzothiazole-piperazine inhibitor ARN19702, In presence of triton
X-100 [more info...]
Chain information for 6dxx_forcomp.pdb #1
---
Chain | Description | UniProt
B | N-acylethanolamine-hydrolyzing acid amidase subunit β | NAAA_HUMAN 126-359
Non-standard residues in 6dxx_forcomp.pdb #1
---
CL — chloride ion
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)
WTF —
[2-(ethylsulfonyl)phenyl][(2S)-4-(6-fluoro-1,3-benzothiazol-2-yl)-2-methylpiperazin-1-yl]methanone
> hide atoms
> ui tool show "Find Cavities"
> kvfinder
7 cavities found for 6dxx_forcomp.pdb #1
6dxx_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.7 | | 102.82 | 129.21 | 476 | 3.89 | 1.31
1.1.4 | | 47.95 | 63.42 | 222 | 3 | 0.81
1.1.3 | | 27 | 45.07 | 125 | 3.6 | 1.68
1.1.1 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.2 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.6 | | 9.72 | 16.91 | 45 | 0.85 | 0.17
> view #1.1.7 @ zoom 0.75
moved plane near -26.36102890222392 [-0.84853172 0.50795012 -0.14825856]
moved plane far -26.36102890222392 [-0.84853172 0.50795012 -0.14825856]
> surface #1.1.1-7 transparency 50
> ~surface #1.1
> surface #1.1.7
> select #!1 & (#1.1.7 @ close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> hide atoms
> label delete pseudobonds
> ui tool show "Find Cavities"
> kvfinder
14 cavities found for 8sv7A.pdb #1
8sv7A.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.10 | | 956.45 | 698.59 | 4428 | 15.34 | 4.44
1.2.13 | | 103.03 | 120.16 | 477 | 4.57 | 1.68
1.2.5 | | 47.95 | 72.39 | 222 | 0 | 0
1.2.11 | | 35.64 | 53.06 | 165 | 0 | 0
1.2.4 | | 29.81 | 41.18 | 138 | 2.16 | 0.58
1.2.1 | | 27.43 | 55.27 | 127 | 0 | 0
1.2.6 | | 25.49 | 40.78 | 118 | 0 | 0
1.2.9 | | 15.34 | 31.68 | 71 | 0.85 | 0.19
1.2.3 | | 14.04 | 19.78 | 65 | 1.04 | 0.26
1.2.12 | | 14.04 | 21.78 | 65 | 1.34 | 0.37
1.2.8 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.2 | | 11.88 | 24.03 | 55 | 0.6 | 0.17
1.2.7 | | 11.02 | 19.4 | 51 | 1.2 | 0.32
> view #1.2.10 @ zoom 0.75
moved plane near -24.658459398507137 [-0. -0. -1.]
moved plane far -24.658459398507137 [-0. -0. -1.]
> surface #1.2.1-14 transparency 50
> ~surface #1.2
> surface #1.2.10
> select #!1 & (#1.2.10 @ ~select #!1 & (#!1.2.10 @ view #!1.2.13 @ zoom 0.75
moved plane near -24.413652383828367 [ 0.01105958 -0.83352862 0.55236557]
moved plane far -24.413652383828367 [ 0.01105958 -0.83352862 0.55236557]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.5 @ zoom 0.75
moved plane near -14.383927998550115 [ 0.59263135 0.39467137 -0.70215568]
moved plane far -14.383927998550115 [ 0.59263135 0.39467137 -0.70215568]
> ~surface #1.2
> surface #!1.2.5
> view #!1.2.13 @ zoom 0.75
moved plane near -24.130028032896337 [ 0.59263135 0.39467137 -0.70215568]
moved plane far -24.130028032896337 [ 0.59263135 0.39467137 -0.70215568]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.10 @ zoom 0.75
moved plane near -36.774467449414566 [ 0.59263135 0.39467137 -0.70215568]
moved plane far -36.774467449414566 [ 0.59263135 0.39467137 -0.70215568]
> ~surface #1.2
> surface #!1.2.10
> view #!1.2.13 @ zoom 0.75
moved plane near -24.166454481449467 [-0.38236314 -0.91645035 -0.1179711 ]
moved plane far -24.166454481449467 [-0.38236314 -0.91645035 -0.1179711 ]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.10 @ zoom 0.75
moved plane near -36.660551896014844 [-0.46607824 -0.59193229 -0.65756159]
moved plane far -36.660551896014844 [-0.46607824 -0.59193229 -0.65756159]
> ~surface #1.2
> surface #!1.2.10
> view #!1.2.13 @ zoom 0.75
moved plane near -24.536082151462534 [-0.46607824 -0.59193229 -0.65756159]
moved plane far -24.536082151462534 [-0.46607824 -0.59193229 -0.65756159]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.5 @ zoom 0.75
moved plane near -13.542036714474131 [-0.46607824 -0.59193229 -0.65756159]
moved plane far -13.542036714474131 [-0.46607824 -0.59193229 -0.65756159]
> ~surface #1.2
> surface #!1.2.5
> view #!1.2.13 @ zoom 0.75
moved plane near -24.536082151462534 [-0.46607824 -0.59193229 -0.65756159]
moved plane far -24.536082151462534 [-0.46607824 -0.59193229 -0.65756159]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.10 @ zoom 0.75
moved plane near -36.660551896014844 [-0.46607824 -0.59193229 -0.65756159]
moved plane far -36.660551896014844 [-0.46607824 -0.59193229 -0.65756159]
> ~surface #1.2
> surface #!1.2.10
> ui tool show "Find Cavities"
> ui windowfill toggle
[Repeated 3 time(s)]
> select #!1.2.10
4428 atoms, 1 residue, 1 model selected
> ~select #!1.2.10
1 model selected
> select #!1 & (#!1.2.10 @ ~select #!1 & (#!1.2.10 @ view #!1.2.13 @ zoom 0.75
moved plane near -23.108837427320186 [ 0.27561638 -0.95107255 0.13963023]
moved plane far -23.108837427320186 [ 0.27561638 -0.95107255 0.13963023]
> ~surface #1.2
> surface #!1.2.13
> view #!1.2.5 @ zoom 0.75
moved plane near -13.262029120079008 [ 0.27561638 -0.95107255 0.13963023]
moved plane far -13.262029120079008 [ 0.27561638 -0.95107255 0.13963023]
> ~surface #1.2
> surface #!1.2.5
> view #!1.2.10 @ zoom 0.75
moved plane near -37.50479614394951 [ 0.27561638 -0.95107255 0.13963023]
moved plane far -37.50479614394951 [ 0.27561638 -0.95107255 0.13963023]
> ~surface #1.2
> surface #!1.2.10
> view #!1.2.14 @ zoom 0.75
moved plane near -15.19837108023883 [ 0.27561638 -0.95107255 0.13963023]
moved plane far -15.19837108023883 [ 0.27561638 -0.95107255 0.13963023]
> ~surface #1.2
> surface #!1.2.14
> showTool true
Unknown command: showTool true
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/8sv7A.pdb format pdb
8sv7A.pdb title:
The 1.53 angstrom structure of human TANGO2 [more info...]
Chain information for 8sv7A.pdb #1
---
Chain | Description | UniProt
A | transport and golgi organization protein 2 homolog | TNG2_HUMAN 1-276
Non-standard residues in 8sv7A.pdb #1
---
SO4 — sulfate ion
> ui tool show "Find Cavities"
> kvfinder
14 cavities found for 8sv7A.pdb #1
8sv7A.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.2.10 | | 956.45 | 698.59 | 4428 | 15.34 | 4.44
1.2.13 | | 103.03 | 120.16 | 477 | 4.57 | 1.68
1.2.5 | | 47.95 | 72.39 | 222 | 0 | 0
1.2.11 | | 35.64 | 53.06 | 165 | 0 | 0
1.2.4 | | 29.81 | 41.18 | 138 | 2.16 | 0.58
1.2.1 | | 27.43 | 55.27 | 127 | 0 | 0
1.2.6 | | 25.49 | 40.78 | 118 | 0 | 0
1.2.9 | | 15.34 | 31.68 | 71 | 0.85 | 0.19
1.2.3 | | 14.04 | 19.78 | 65 | 1.04 | 0.26
1.2.12 | | 14.04 | 21.78 | 65 | 1.34 | 0.37
1.2.8 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.14 | | 12.31 | 29.54 | 57 | 0 | 0
1.2.2 | | 11.88 | 24.03 | 55 | 0.6 | 0.17
1.2.7 | | 11.02 | 19.4 | 51 | 1.2 | 0.32
> view #1.2.10 @ zoom 0.75
moved plane near -37.90505864429557 [-0. -0. -1.]
moved plane far -37.90505864429557 [-0. -0. -1.]
> surface #1.2.1-14 transparency 50
> ~surface #1.2
> surface #1.2.10
> showTool true
Unknown command: showTool true
> mlp (#1 & protein) surfaces #1.2.10true
Invalid "surfaces" argument: only initial part "#1.2.10" of atom specifier
valid
> mlp (#1 & protein) surfaces #1.2.10
Map values for surface "cavity 10_cavity SES surface": minimum -25.79, mean
-3.551, maximum 18.13
> hide atoms
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/Tango2_cavity_KVFinder.cxs
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2x1d_forcomp.pdb
> format pdb
2x1d_forcomp.pdb title:
The crystal structure of mature acyl coenzyme A:isopenicillin N
acyltransferase from penicillium chrysogenum [more info...]
Chain information for 2x1d_forcomp.pdb #1
---
Chain | Description
B | acyl-coenzyme
Non-standard residues in 2x1d_forcomp.pdb #1
---
CSD — (CSD)
53 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> ui tool show "Find Cavities"
> kvfinder
11 cavities found for 2x1d_forcomp.pdb #1
2x1d_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.3 | | 180.36 | 150.86 | 835 | 4.02 | 1.19
1.1.8 | | 50.76 | 64.27 | 235 | 4.37 | 2.06
1.1.7 | | 38.45 | 59.28 | 178 | 1.2 | 0.36
1.1.6 | | 32.18 | 49.97 | 149 | 3.06 | 1.04
1.1.10 | | 29.16 | 43.1 | 135 | 1.7 | 0.5
1.1.1 | | 28.94 | 52.49 | 134 | 0 | 0
1.1.9 | | 28.08 | 38.06 | 130 | 1.9 | 0.8
1.1.2 | | 25.7 | 37.43 | 119 | 2.16 | 0.62
1.1.4 | | 8.86 | 17.04 | 41 | 1.34 | 0.47
1.1.11 | | 8.42 | 16.5 | 39 | 0.6 | 0.15
1.1.5 | | 6.91 | 16.05 | 32 | 1.2 | 0.41
> view #1.1.3 @ zoom 0.75
moved plane near -22.60917140871646 [-0. -0. -1.]
moved plane far -22.60917140871646 [-0. -0. -1.]
> surface #1.1.1-11 transparency 50
> ~surface #1.1
> surface #1.1.3
> mlp (#1 & protein) surfaces #1.1.3
Map values for surface "cavity 3_cavity SES surface": minimum nan, mean nan,
maximum nan
/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/surface/colorvol.py:247: RuntimeWarning: invalid value
encountered in cast
rgba8 = (255*rgba).astype(uint8)
> view #!1.1.8 @ zoom 0.75
moved plane near -15.838972615031372 [ 0.99720757 -0.02167071 -0.07146642]
moved plane far -15.838972615031372 [ 0.99720757 -0.02167071 -0.07146642]
> ~surface #1.1
> surface #!1.1.8
> view #!1.1.3 @ zoom 0.75
moved plane near -22.933255211535922 [ 0.99720757 -0.02167071 -0.07146642]
moved plane far -22.933255211535922 [ 0.99720757 -0.02167071 -0.07146642]
> ~surface #1.1
> surface #!1.1.3
> view #!1.1.8 @ zoom 0.75
moved plane near -19.020339581229845 [0.65607322 0.18354291 0.7320382 ]
moved plane far -19.020339581229845 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.8
> view #!1.1.7 @ zoom 0.75
moved plane near -24.78366217962295 [0.65607322 0.18354291 0.7320382 ]
moved plane far -24.78366217962295 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.7
> view #!1.1.6 @ zoom 0.75
moved plane near -18.292201576856502 [0.65607322 0.18354291 0.7320382 ]
moved plane far -18.292201576856502 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.6
> view #!1.1.10 @ zoom 0.75
moved plane near -22.17286704761159 [0.65607322 0.18354291 0.7320382 ]
moved plane far -22.17286704761159 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.10
> view #!1.1.1 @ zoom 0.75
moved plane near -12.285774068538963 [0.65607322 0.18354291 0.7320382 ]
moved plane far -12.285774068538963 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.1
> view #!1.1.9 @ zoom 0.75
moved plane near -18.42599101098824 [0.65607322 0.18354291 0.7320382 ]
moved plane far -18.42599101098824 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.9
> view #!1.1.2 @ zoom 0.75
moved plane near -16.63684445958934 [0.65607322 0.18354291 0.7320382 ]
moved plane far -16.63684445958934 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.2
> view #!1.1.4 @ zoom 0.75
moved plane near -16.414902047717934 [0.65607322 0.18354291 0.7320382 ]
moved plane far -16.414902047717934 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.4
> view #!1.1.11 @ zoom 0.75
moved plane near -18.38642362025197 [0.65607322 0.18354291 0.7320382 ]
moved plane far -18.38642362025197 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.11
> view #!1.1.5 @ zoom 0.75
moved plane near -16.304766172987993 [0.65607322 0.18354291 0.7320382 ]
moved plane far -16.304766172987993 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.5
> view #!1.1.3 @ zoom 0.75
moved plane near -27.598300781751323 [0.65607322 0.18354291 0.7320382 ]
moved plane far -27.598300781751323 [0.65607322 0.18354291 0.7320382 ]
> ~surface #1.1
> surface #!1.1.3
> transparency #1.1.3 30
> transparency #1.1.3 50
> transparency #1.1.3 0
> transparency #1.1.3
Missing or invalid "percent" argument: Expected a number
> transparency #1.1.3 10
> transparency #1.1.3 50
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
> format pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/6dxx_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue CYS (103 )
Cannot find LINK/SSBOND residue ASN (37 )
Cannot find LINK/SSBOND residue ASN (107 )
4 messages similar to the above omitted
6dxx_forcomp.pdb title:
Human N-acylethanolamine-hydrolyzing acid amidase (naaa) In complex with non-
covalent benzothiazole-piperazine inhibitor ARN19702, In presence of triton
X-100 [more info...]
Chain information for 6dxx_forcomp.pdb #1
---
Chain | Description | UniProt
B | N-acylethanolamine-hydrolyzing acid amidase subunit β | NAAA_HUMAN 126-359
Non-standard residues in 6dxx_forcomp.pdb #1
---
CL — chloride ion
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)
WTF —
[2-(ethylsulfonyl)phenyl][(2S)-4-(6-fluoro-1,3-benzothiazol-2-yl)-2-methylpiperazin-1-yl]methanone
> hide atoms
> ui tool show "Find Cavities"
> kvfinder
7 cavities found for 6dxx_forcomp.pdb #1
6dxx_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.7 | | 102.82 | 129.21 | 476 | 3.89 | 1.31
1.1.4 | | 47.95 | 63.42 | 222 | 3 | 0.81
1.1.3 | | 27 | 45.07 | 125 | 3.6 | 1.68
1.1.1 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.2 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.5 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.6 | | 9.72 | 16.91 | 45 | 0.85 | 0.17
> view #1.1.7 @ zoom 0.75
moved plane near -23.138188727315367 [-0. -0. -1.]
moved plane far -23.138188727315367 [-0. -0. -1.]
> surface #1.1.1-7 transparency 50
> ~surface #1.1
> surface #1.1.7
> mlp (#1 & protein) surfaces #1.1.7
Map values for surface "cavity 7_cavity SES surface": minimum -16.88, mean
5.33, maximum 20.92
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
> format pdb
Summary of feedback from opening
/Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/5u7z_forcomp.pdb
---
warnings | Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (31 )
Cannot find LINK/SSBOND residue CYS (388 )
Cannot find LINK/SSBOND residue NAG (1 )
Cannot find LINK/SSBOND residue NAG (404 )
9 messages similar to the above omitted
5u7z_forcomp.pdb title:
Human acid ceramidase (ASAH1, acdase) self-activated [more info...]
Chain information for 5u7z_forcomp.pdb #1
---
Chain | Description | UniProt
B | acid ceramidase | A8K0B6_HUMAN 141-395
> ui tool show "Find Cavities"
> kvfinder
13 cavities found for 5u7z_forcomp.pdb #1
5u7z_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.5 | | 362.88 | 334.81 | 1680 | 6.18 | 1.73
1.1.13 | | 106.92 | 109.88 | 495 | 3.7 | 1.66
1.1.3 | | 80.35 | 122.76 | 372 | 7.22 | 3.63
1.1.10 | | 74.52 | 99.77 | 345 | 5.16 | 2.56
1.1.1 | | 55.51 | 68.62 | 257 | 3.55 | 1.5
1.1.11 | | 42.98 | 52.99 | 199 | 1.8 | 0.74
1.1.9 | | 36.07 | 59.9 | 167 | 0 | 0
1.1.6 | | 28.08 | 54.76 | 130 | 4.84 | 3
1.1.8 | | 23.11 | 35.28 | 107 | 1.8 | 0.54
1.1.2 | | 18.58 | 27.35 | 86 | 2.4 | 0.85
1.1.7 | | 8.42 | 15.83 | 39 | 1.2 | 0.33
1.1.4 | | 7.34 | 13.6 | 34 | 0.6 | 0.19
1.1.12 | | 7.13 | 14.97 | 33 | 0.6 | 0.2
> view #1.1.5 @ zoom 0.75
moved plane near -39.65249553726486 [-0.29191227 0.85451381 -0.42964331]
moved plane far -39.65249553726486 [-0.29191227 0.85451381 -0.42964331]
> surface #1.1.1-13 transparency 50
> ~surface #1.1
> surface #1.1.5
> mlp (#1 & protein) surfaces #1.1.5
Map values for surface "cavity 5_cavity SES surface": minimum -25.61, mean
-1.562, maximum 20.47
> close session
> open /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2hf0_forcomp.pdb
> format pdb
2hf0_forcomp.pdb title:
Bifidobacterium longum bile salt hydrolase [more info...]
Chain information for 2hf0_forcomp.pdb #1
---
Chain | Description | UniProt
B | bile salt hydrolase | Q9KK62_BIFLO 1-316
> ui tool show "Find Cavities"
> kvfinder
14 cavities found for 2hf0_forcomp.pdb #1
2hf0_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.11 | | 899.21 | 605.61 | 4163 | 9.62 | 2.96
1.1.10 | | 60.7 | 72.68 | 281 | 4.2 | 1.33
1.1.14 | | 56.81 | 79.96 | 263 | 1.8 | 0.45
1.1.9 | | 55.3 | 76.96 | 256 | 2.47 | 0.6
1.1.8 | | 29.59 | 51.3 | 137 | 0 | 0
1.1.7 | | 23.11 | 42.35 | 107 | 0 | 0
1.1.2 | | 18.36 | 33.35 | 85 | 2.16 | 0.79
1.1.5 | | 17.93 | 28.1 | 83 | 1.8 | 0.71
1.1.13 | | 17.28 | 36.68 | 80 | 0 | 0
1.1.3 | | 16.42 | 28.26 | 76 | 1.2 | 0.28
1.1.4 | | 12.96 | 17.76 | 60 | 1.34 | 0.42
1.1.12 | | 12.31 | 29.54 | 57 | 0 | 0
1.1.6 | | 9.94 | 17.92 | 46 | 0.85 | 0.24
1.1.1 | | 9.72 | 19.27 | 45 | 0.6 | 0.11
> view #1.1.11 @ zoom 0.75
moved plane near -33.10490310151244 [-0.35798124 0.92803331 0.10297386]
moved plane far -33.10490310151244 [-0.35798124 0.92803331 0.10297386]
> surface #1.1.1-14 transparency 50
> ~surface #1.1
> surface #1.1.11
> mlp (#1 & protein) surfaces #1.1.11
Map values for surface "cavity 11_cavity SES surface": minimum -24.12, mean
0.362, maximum 23.17
> select protein
2463 atoms, 2528 bonds, 316 residues, 1 model selected
> ui tool show "Basic Actions"
> ui tool show "Color Actions"
> color sel bychain
> color coil gray
> color helix orange red
> color strand purple
> ui tool show "Color Actions"
> color helix yellow
> color helix gold
> color helix light yellow
> color helix gold
> color strand turquoise
> select clear
> color strand medium turquoise
> color helix sandy brown
> color #1.1.11 #0b7905
> color #1.1.11 #6d5079
> color #1.1.11 #6e5079
> color #1.1.11 #333b79
> color #1.1.11 #792e2c
> color #1.1.11 #796c33
> color #1.1.11 #6f1279
> color #1.1.11 #256379
> color #1.1.11 #796318
> color #1.1.11 #1c0679
> color #1.1.11 #1b0679
> color #1.1.11 #130a79
> transparency #1.1.11 50
> transparency #1.1.11 30
> ui tool show "Find Cavities"
> kvfinder volumeCutoff 50
4 cavities found for 2hf0_forcomp.pdb #1
2hf0_forcomp.pdb Cavities
---
ID | | Volume | Area | Points | Maximum
Depth | Average
Depth
1.1.3 | | 899.21 | 605.61 | 4163 | 9.62 | 2.96
1.1.2 | | 60.7 | 72.68 | 281 | 4.2 | 1.33
1.1.4 | | 56.81 | 79.96 | 263 | 1.8 | 0.45
1.1.1 | | 55.3 | 76.96 | 256 | 2.47 | 0.6
> view #1.1.3 @ zoom 0.75
moved plane near -36.662915572748936 [-0.5331149 0.76136199 0.36893959]
moved plane far -36.662915572748936 [-0.5331149 0.76136199 0.36893959]
> surface #1.1.1-4 transparency 50
> ~surface #1.1
> surface #1.1.3
> view #!1.1.2 @ zoom 0.75
moved plane near -23.00105657031177 [-0.5331149 0.76136199 0.36893959]
moved plane far -23.00105657031177 [-0.5331149 0.76136199 0.36893959]
> ~surface #1.1
> surface #!1.1.2
> view #!1.1.4 @ zoom 0.75
moved plane near -24.751349236332846 [-0.5331149 0.76136199 0.36893959]
moved plane far -24.751349236332846 [-0.5331149 0.76136199 0.36893959]
> ~surface #1.1
> surface #!1.1.4
> view #!1.1.1 @ zoom 0.75
moved plane near -23.36801995932231 [-0.5331149 0.76136199 0.36893959]
moved plane far -23.36801995932231 [-0.5331149 0.76136199 0.36893959]
> ~surface #1.1
> surface #!1.1.1
> view #!1.1.3 @ zoom 0.75
moved plane near -36.662915572748936 [-0.5331149 0.76136199 0.36893959]
moved plane far -36.662915572748936 [-0.5331149 0.76136199 0.36893959]
> ~surface #1.1
> surface #!1.1.3
> color #1.1.3 #998798
> color #1.1.3 #927a99
> color #1.1.3 #976b99
> ui tool show "Color Actions"
> color deep pink
> color slate blue
> color medium slate blue
> color helix sandy brown
> color strand medium turquoise
> color coil gray
> view
[Repeated 2 time(s)]
> select #!1/B:1
6 atoms, 5 bonds, 1 residue, 1 model selected
> color sel red
> style sel stick
Changed 6 atom styles
> show sel atoms
> label sel text "{0.name} {0.number}{0.insertion_code}"
> label height 1
> label height 1.5
[Repeated 1 time(s)]
> select clear
> view #!1.1.1 @ zoom 0.75
moved plane near -24.499848458712496 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -24.499848458712496 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.1
> view #!1.1.1,4 @ zoom 0.75
moved plane near -32.78823181406694 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -32.78823181406694 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.1,4
> view #!1.1.1-2,4 @ zoom 0.75
moved plane near -39.55025183385154 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -39.55025183385154 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.1-2,4
> view #!1.1.1-4 @ zoom 0.75
moved plane near -49.59804632908499 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -49.59804632908499 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.1-4
> view #!1.1.3 @ zoom 0.75
moved plane near -35.65181385822235 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -35.65181385822235 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.3
> view #!1.1.1-4 @ zoom 0.75
moved plane near -49.59804632908499 [ 0.60863115 0.37890103 -0.69713854]
moved plane far -49.59804632908499 [ 0.60863115 0.37890103 -0.69713854]
> ~surface #1.1
> surface #!1.1.1-4
> view #!1.1.3 @ zoom 0.75
moved plane near -35.27795093621785 [ 0.63064904 0.38458439 -0.67407467]
moved plane far -35.27795093621785 [ 0.63064904 0.38458439 -0.67407467]
> ~surface #1.1
> surface #!1.1.3
> save
> /Users/dayongzhou/Documents/TANGO2_PAPER_FIGURES/2hf0_cavity_KVFinder.cxs
——— End of log from Fri Aug 1 14:06:38 2025 ———
> view name session-start
opened ChimeraX session
> cartoon style width 1.3 thickness 0.25
> select H
Nothing selected
> delete atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10 (2025-06-26)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac14,2
Model Number: MN6Y3CH/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.1.1
OS Loader Version: 11881.1.1
Software:
System Software Overview:
System Version: macOS 15.0.1 (24A348)
Kernel Version: Darwin 24.0.0
Time since boot: 31 days, 3 hours, 1 minute
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.4.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.5.0
build: 1.2.2.post1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.18
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-Clipper: 0.25.2
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.2
coverage: 7.9.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.14
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.18.0
fonttools: 4.58.4
funcparserlib: 2.0.0a0
glfw: 2.9.0
grako: 3.16.5
h5py: 3.14.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_core: 5.8.1
jupyterlab_widgets: 3.0.15
kiwisolver: 1.4.8
line_profiler: 4.2.0
lxml: 5.3.1
lz4: 4.4.4
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.1.0
narwhals: 1.48.0
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numpy: 2.2.6
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.8
plotly: 6.0.1
pluggy: 1.6.0
prompt_toolkit: 3.0.51
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pyKVFinder: 0.8.1
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.3
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2025.2
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.4
tomlkit: 0.13.2
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.14.0
tzdata: 2025.2
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
Change History (2)
comment:1 by , 3 weeks ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash deleting atoms when cavities shown |
comment:2 by , 2 weeks ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Fix in tomorrow's daily build.
Fix: https://github.com/RBVI/ChimeraX/commit/ee1663a7406814cb001a6c66e8f77e03c6665315
Note:
See TracTickets
for help on using tickets.
Hi Dayong,
--Eric