SEQCROW: QCheckBox has been deleted

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
> ui mousemode right "structure eraser"

> undo

[Repeated 1 time(s)]

> ui tool show "2D Builder"

getting structure  

> ui mousemode right substitute

> substitute #2/a:1@H1 substituents 26-F-Ph minimize true newResidue false
> useRemoteness false

> close

getting structure  
getting structure  

> ui mousemode right substitute

> substitute #1/a:1@H12 substituents Et minimize true newResidue false
> useRemoteness false

> ui tool show "Build QM Input"

settings migrated from version 2  

job started: local Gaussian job "Etilsikloheksana"  
job could not start because Gaussian executable (g09.exe) was not found  
ensure the correct path to executable is specified in the "SEQCROW Jobs"  
settings in Favorites/Preferences > Settings...  
job finished: local Gaussian job "Etilsikloheksana"  
job started: local Gaussian job "Etilsikloheksana"  
job could not start because Gaussian executable (g09.exe) was not found  
ensure the correct path to executable is specified in the "SEQCROW Jobs"  
settings in Favorites/Preferences > Settings...  
job finished: local Gaussian job "Etilsikloheksana"  
job started: local Gaussian job "Etilsikloheksana"  
job could not start because Gaussian executable (g09.exe) was not found  
ensure the correct path to executable is specified in the "SEQCROW Jobs"  
settings in Favorites/Preferences > Settings...  
job finished: local Gaussian job "Etilsikloheksana"  
Traceback (most recent call last):  
File "C:\Users\HP\AppData\Local\UCSF\ChimeraX\1.10\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 6406, in run_job  
if not widget.enabled:  
^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Users\HP\AppData\Local\UCSF\ChimeraX\1.10\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 6406, in run_job  
if not widget.enabled:  
^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Users\HP\AppData\Local\UCSF\ChimeraX\1.10\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 6406, in run_job  
if not widget.enabled:  
^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Users\HP\AppData\Local\UCSF\ChimeraX\1.10\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 6406, in run_job  
if not widget.enabled:  
^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Users\HP\AppData\Local\UCSF\ChimeraX\1.10\Python311\site-
packages\SEQCROW\tools\input_generator.py", line 6406, in run_job  
if not widget.enabled:  
^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
RuntimeError: wrapped C/C++ object of type QCheckBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\ui\options\options.py", line 156, in enabled  
return self.widget.isEnabled()  
^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 30.0.101.3111
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: en_ID.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: HP
Model: HP Laptop 14s-cf2xxx
OS: Microsoft Windows 11 Home Single Language (Build 26200)
Memory: 12,699,947,008
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i3-10110U CPU @ 2.10GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.6.1
    build: 1.2.2.post1
    certifi: 2025.7.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.19
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
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    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
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    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
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    ChimeraX-Modeller: 1.5.19
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    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.3
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
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    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
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    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
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    ChimeraX-SwapAA: 2.0.1
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    ChimeraX-TapeMeasure: 1.0
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    ChimeraX-ToolshedUtils: 1.2.4
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    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
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    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
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    ChimeraX-WebCam: 1.0.2
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    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
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    cycler: 0.12.1
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    executing: 2.2.0
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    imagecodecs: 2024.6.1
    imagesize: 1.4.1
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    ipykernel: 6.29.5
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    roman-numerals-py: 3.1.0
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    Send2Trash: 1.8.3
    SEQCROW: 1.9.4
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