Timeline



Dec 14, 2023:

9:43 PM Ticket #10350 (Crash showing menu) created by chimerax-bug-report@…
[…]
7:49 PM Ticket #10349 (Segger: fmap.data is None) created by rslack@…
[…]
6:12 PM apple-dev edited by pett
(diff)
4:02 PM Ticket #10327 (Missing parts of Mac/Windows programming documentation) closed by Zach Pearson
fixed: Upgraded the script to use bash 3 features; docs should work in both …
3:54 PM Ticket #10348 (Crash emitting color_pause signal) created by chimerax-bug-report@…
[…]
3:23 PM Ticket #10343 (Button panel: wrapped C/C++ object of type QGridLayout has been deleted) closed by Tom Goddard
fixed: Fixed in daily build, not in 1.7 (too close to release). A button …
2:57 PM 2023-12-14 edited by Tom Goddard
(diff)
1:33 PM Ticket #10346 (Opening mmCIF file: MemoryError: not enough memory) closed by Tom Goddard
duplicate: After failing to open PDB 8d33 also failed making map copy. Had 1.5 …
1:27 PM Ticket #10337 (Flatpak movie generation fails) closed by Greg Couch
fixed: Fixed. Missed copying the needed patch from the development branch to …
12:47 PM Ticket #10347 (Crash in Qt/graphics driver at startup) created by sanjay.dey@…
[…]
12:02 PM Ticket #10342 (ArtiaX/pandas vs. numpy) closed by Greg Couch
limitation: User must have installed incompatible numpy. Unfortunately, pip will …
10:23 AM Ticket #10345 (Graphics driver and/or remote display crash) closed by pett
nonchimerax
10:14 AM Ticket #10344 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
nonchimerax: Seems like they need to install a graphics driver; the renderer is "Mesa"
7:41 AM Ticket #10346 (Opening mmCIF file: MemoryError: not enough memory) created by chimerax-bug-report@…
[…]
12:59 AM Ticket #10345 (Graphics driver and/or remote display crash) created by chimerax-bug-report@…
[…]

Dec 13, 2023:

11:40 PM Ticket #10344 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
9:02 PM Ticket #10343 (Button panel: wrapped C/C++ object of type QGridLayout has been deleted) created by steffen@…
[…]
6:07 PM phenix-12-14-23 edited by pett
(diff)
5:22 PM phenix-12-14-23 edited by pett
(diff)
5:20 PM phenix-12-14-23 edited by pett
(diff)
5:17 PM phenix-12-14-23 edited by pett
(diff)
4:11 PM Ticket #10342 (ArtiaX/pandas vs. numpy) created by chimerax-bug-report@…
[…]
1:15 PM Ticket #10341 (Segmentations saved in sessions can't be edited) created by Zach Pearson
DICOM Grids have a reference_data field that isn't saved and restored …
1:13 PM Ticket #10196 (Segmentations saved in sessions don't get added to seg tool menu) closed by Zach Pearson
fixed: This is now fixed.
1:13 PM Ticket #9321 (DICOM: restore_snapshot for {Volume,VolumeImage} returned None) closed by Zach Pearson
fixed: I've changed the way DICOMs get restored to follow ChimeraX's convention.
11:54 AM phenix-12-14-23 edited by pett
(diff)
11:51 AM phenix-12-14-23 created by pett
11:50 AM Features edited by pett
(diff)
11:34 AM Ticket #10340 (No space left on device saving command history) closed by pett
nonchimerax
11:27 AM Ticket #10340 (No space left on device saving command history) created by chimerax-bug-report@…
[…]
11:22 AM Ticket #10339 (Crash in garbage collection while parsing matchmaker command atomspec ...) closed by pett
can't reproduce: Hi Mark, Thanks for reporting this problem. Unfortunately …
7:18 AM Ticket #10339 (Crash in garbage collection while parsing matchmaker command atomspec ...) created by maf95@…
[…]
1:31 AM Ticket #10338 (MemoryError saving session) created by Praffuls@…
[…]

Dec 12, 2023:

10:16 PM Ticket #10337 (Flatpak movie generation fails) created by david.chalmers@…
[…]
5:10 PM Ticket #10336 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
5:08 PM Ticket #10335 (Crash at exit) closed by pett
can't reproduce: Hi Vijay, Thanks for reporting this problem. It's not clear exactly …
5:01 PM Ticket #10334 (ISOLDE: crash in start_sim) closed by pett
can't reproduce: Version 1.3 and no reporter…
4:59 PM Ticket #10333 (Error launching CUDA compiler) closed by pett
can't reproduce: Version 1.3 and no reporter…
4:57 PM Ticket #10332 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate
4:55 PM Ticket #10331 (Crash setting volume level) closed by pett
can't reproduce
4:53 PM Ticket #10330 (Crash in graphics masked_edges() computing mesh while setting volume level) closed by pett
can't reproduce
4:51 PM Ticket #10329 (Crash in event loop) closed by pett
can't reproduce
3:38 PM Ticket #10336 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
3:04 PM Ticket #10335 (Crash at exit) created by vsreddy@…
[…]
1:58 PM Ticket #10334 (ISOLDE: crash in start_sim) created by chimerax-bug-report@…
[…]
1:45 PM Ticket #10333 (Error launching CUDA compiler) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #10332 (Unable to restore objects of NewerVersionQuery class) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #10326 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: ChimeraX crashed in Apple's Intel graphics driver. Unfortunately …
1:33 PM Ticket #10331 (Crash setting volume level) created by chimerax-bug-report@…
[…]
1:30 PM Ticket #10325 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
1:26 PM Dev2023-12-18 created by Tom Goddard
1:24 PM 2023-12-14 created by Tom Goddard
1:23 PM 2023-12-7 edited by Tom Goddard
(diff)
1:19 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:13 PM Ticket #10330 (Crash in graphics masked_edges() computing mesh while setting volume level) created by chimerax-bug-report@…
[…]
12:59 PM Ticket #10329 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:40 AM Ticket #10328 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:34 AM Ticket #10324 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in the …
9:29 AM Ticket #10322 (MemoryError opening mmCIF files) closed by pett
duplicate
5:11 AM Ticket #10328 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Dec 11, 2023:

6:42 PM Ticket #10327 (Missing parts of Mac/Windows programming documentation) created by pett
Comparing the builtin non-Linux documentation for Python modules …
5:52 PM Ticket #10326 (Graphics hardware encountered an error and was reset) created by nkkhandelwal@…
[…]
4:22 PM Dev2023-12-11 edited by Tom Goddard
(diff)
4:22 PM Dev2023-12-11 edited by Tom Goddard
(diff)
4:04 PM Ticket #10325 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
3:45 PM Ticket #10324 (Unable to restore objects of NewerVersionQuery class) created by dzyla@…
[…]
3:20 PM Ticket #10321 (Fit search results list may show wrong results for subsequent searches.) closed by Tom Goddard
not a bug: This bug is not actually a bug. It was real variability in the …
3:17 PM Ticket #10323 (fitmap search animation moving models does not take a direct route) closed by Tom Goddard
fixed: Fixed in 1.8 daily and 1.7. The interpolation code was using a center …
3:14 PM Ticket #10323 (fitmap search animation moving models does not take a direct route) created by goddard@…
[…]
2:40 PM Ticket #9608 (Registration mailing-list subscription: HTTP 404 failure) reopened by pett
When I register my cgl email, it says: "Your copy of Chimera is …
2:28 PM Ticket #10218 (ffmpeg failure) closed by Greg Couch
fixed: Had to compile ffmpeg from source to get a version that would encode …
2:22 PM Ticket #9608 (Registration mailing-list subscription: HTTP 404 failure) closed by Greg Couch
fixed: Fixed by adding a cgi script that mimics the current API on …
2:00 PM Ticket #10322 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
1:29 PM Ticket #10321 (Fit search results list may show wrong results for subsequent searches.) created by goddard@…
[…]
1:19 PM Ticket #10320 (MemoryError opening mmCIF files) closed by pett
duplicate
1:01 PM Ticket #10320 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
12:53 PM Ticket #10319 (Make move to center mouse mode keep pivot at center after translation) created by leeyang+chimerax@…
Yang wants the center of rotation to stay at the middle of the …
12:42 PM Ticket #10318 (AlphaFold: 'AtomicStructure' object has no attribute ...) closed by Tom Goddard
limitation: The user ran an AlphaFold prediction of a single chain #1/A, but the …
11:03 AM Ticket #10317 (MemoryError opening mmCIF files) closed by pett
duplicate
11:02 AM Ticket #10317 (MemoryError opening mmCIF files) reopened by pett
11:02 AM Ticket #10317 (MemoryError opening mmCIF files) closed by pett
can't reproduce
10:55 AM Ticket #10310 (Graphics crash, Linux 6.2.0, Mesa 230.0.4, showing volume at step 1) closed by Tom Goddard
nonchimerax: Linux Mesa graphics driver crash.
10:51 AM Ticket #10315 (MemoryError opening mmCIF files) closed by pett
duplicate
10:11 AM Ticket #10314 (MemoryError opening mmCIF files) closed by pett
duplicate
10:10 AM Ticket #10313 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:08 AM Ticket #10312 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:07 AM Ticket #10311 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi AJ, Thanks for reporting this problem. This is a bug in the Qt …
10:03 AM Ticket #10309 (Crash in garbage collection) closed by pett
can't reproduce
10:01 AM Ticket #10308 (Dock Prep: bad hydrogen) closed by pett
not a bug
9:57 AM Ticket #10307 (MemoryError opening mmCIF files) closed by pett
duplicate: Hi Hongmin, Thanks for reporting this problem. It is fixed in the 1.7 …
9:54 AM Ticket #10306 (FindHBond: accPhiPsi() takes exactly N arguments) closed by pett
not a bug
9:52 AM Ticket #10305 (KeyError matching selected regions) closed by pett
duplicate
6:46 AM Ticket #10318 (AlphaFold: 'AtomicStructure' object has no attribute ...) created by chimerax-bug-report@…
[…]

Dec 10, 2023:

7:35 PM Ticket #10317 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
5:18 PM Ticket #10316 ('clear log' missing from session restore options) created by ruchi.sharma@…
[…]
12:55 PM Ticket #10315 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
11:50 AM NIAID2023 edited by Scooter Morris
(diff)

Dec 9, 2023:

11:08 AM Ticket #10314 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
6:45 AM Ticket #10313 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Dec 8, 2023:

4:20 PM Ticket #10312 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:07 PM Ticket #10311 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by abrahamjmorton@…
[…]
10:04 AM Ticket #10310 (Graphics crash, Linux 6.2.0, Mesa 230.0.4, showing volume at step 1) created by chimerax-bug-report@…
[…]
4:16 AM Ticket #10309 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Dec 7, 2023:

8:05 PM Ticket #10308 (Dock Prep: bad hydrogen) created by chimerax-bug-report@…
[…]
7:59 PM Ticket #10307 (MemoryError opening mmCIF files) created by caihongmin@…
[…]
6:51 PM Ticket #10306 (FindHBond: accPhiPsi() takes exactly N arguments) created by chimerax-bug-report@…
[…]
5:09 PM Ticket #10305 (KeyError matching selected regions) created by chimerax-bug-report@…
[…]
2:46 PM Ticket #10304 (Crash after computing/showing surface) closed by pett
can't reproduce
2:43 PM Ticket #10303 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate
2:39 PM Ticket #10300 (Crash adding Volume menu) closed by pett
can't reproduce: The exception info says "VM - Fault hit memory shortage" and memory …
2:01 PM Ticket #10304 (Crash after computing/showing surface) created by chimerax-bug-report@…
[…]
1:14 PM Ticket #10303 (Unable to restore objects of NewerVersionQuery class) created by gage.leighton@…
[…]
12:58 PM Ticket #10299 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
12:56 PM Ticket #10298 (Crash in event loop) closed by pett
can't reproduce
12:32 PM Ticket #10302 (Snapshot toolbar button: Permission denied reading directory ...) closed by Tom Goddard
nonchimerax: This seems like a macOS bug. It may only happen when you switch …
12:29 PM Ticket #10301 (Permission denied reading directory "/Users/goddard/Desktop") closed by Tom Goddard
duplicate
12:20 PM Ticket #10302 (Snapshot toolbar button: Permission denied reading directory ...) created by goddard@…
[…]
12:18 PM Ticket #10301 (Permission denied reading directory "/Users/goddard/Desktop") created by goddard@…
[…]
5:51 AM Ticket #10300 (Crash adding Volume menu) created by chimerax-bug-report@…
[…]
5:27 AM Ticket #10299 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Dec 6, 2023:

10:20 PM Ticket #10298 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:10 PM Ticket #10244 ("Direct" modeling doesn't handle target deletion relative to template) closed by pett
fixed: Fix in next daily build. Fix: …
12:51 PM Ticket #10293 (Default color targeting issue) closed by Tom Goddard
wontfix: That would be nice. But ChimeraX commands that take an atom specifier …
12:28 PM Ticket #10290 (Problems regarding Caver radius recipe) closed by Tom Goddard
not a bug: The instructions on the "Show Caver results" web page say: …
12:13 PM Ticket #10297 (Elaborate "Include maps" option in session save dialog) closed by Tom Goddard
fixed: Done. In 1.8 daily build and 1.7. Save dialog option now reads "Copy …
12:10 PM Ticket #10297 (Elaborate "Include maps" option in session save dialog) created by goddard@…
[…]
11:12 AM Ticket #10296 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate
11:11 AM Ticket #10295 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate: Hi Helen, Thanks for reporting this problem. It has been fixed in …
10:46 AM Ticket #10296 (Unable to restore objects of NewerVersionQuery class) created by helen.duyvesteyn@…
[…]
10:46 AM Ticket #10295 (Unable to restore objects of NewerVersionQuery class) created by helen.duyvesteyn@…
[…]
10:05 AM Ticket #10294 (coordset slider doesn't have changed number of coord sets) created by pett
The coordinate set slider doesn't handle a change in the number of …
6:19 AM Ticket #10293 (Default color targeting issue) created by Tristan Croll
[…]
12:05 AM Ticket #10292 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by chimerax-bug-report@…
[…]

Dec 5, 2023:

11:49 PM Ticket #10291 (pkg_resources is deprecated) created by Greg Couch
See https://setuptools.pypa.io/en/latest/pkg_resources.html. …
9:56 PM Ticket #10290 (Problems regarding Caver radius recipe) created by alberto.segovia@…
[…]
12:38 PM Ticket #10286 (Crash while adjusting volume level?) closed by Tom Goddard
can't reproduce: ChimeraX appears to have crashed in the Qt window toolkit deleting an …
12:24 PM Ticket #10284 (Color surface: object of type 'NoneType' has no len()) closed by Tom Goddard
can't reproduce: The error is because you have a molecular surface that has no …
12:14 PM Dev2023-12-11 created by Tom Goddard
12:13 PM 2023-12-7 created by Tom Goddard
12:11 PM DeveloperMeetings edited by Tom Goddard
(diff)
11:45 AM Ticket #10289 (Qt fatal error: Failed to initialize graphics backend for OpenGL.) closed by pett
can't reproduce: Looks like remote display
11:40 AM Ticket #10289 (Qt fatal error: Failed to initialize graphics backend for OpenGL.) created by chimerax-bug-report@…
[…]
11:32 AM Ticket #8238 (User-installed bundles interfering with build) reopened by Zach Pearson
11:18 AM Ticket #10279 (StarMap: embedded null character in Rosetta input) closed by pett
can't reproduce: Hi Wolfgang, Unfortunately the reporter email address is …
11:05 AM Ticket #10287 (MemoryError opening mmCIF files) closed by pett
duplicate
10:56 AM Ticket #10283 (Crash while drag-selecting residues in sequence viewer) closed by pett
can't reproduce
10:02 AM Ticket #10288 (Crash in event loop) created by antonio.florencio@…
[…]
7:01 AM Ticket #10287 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
6:52 AM Ticket #10286 (Crash while adjusting volume level?) created by scheffer@…
[…]
5:59 AM Ticket #10285 (SEQCROW: open ORCA output: could not convert string to float: 'Starting') created by andreapellegrini6698@…
[…]
3:35 AM Ticket #10284 (Color surface: object of type 'NoneType' has no len()) created by f.bruno@…
[…]

Dec 4, 2023:

5:07 PM Ticket #10283 (Crash while drag-selecting residues in sequence viewer) created by chimerax-bug-report@…
[…]
4:50 PM Ticket #8238 (User-installed bundles interfering with build) closed by Zach Pearson
fixed: Committed the fix today.
4:28 PM Dev2023-12-4 edited by Tom Goddard
(diff)
3:31 PM Ticket #10119 (atom_site.label_asym_id not allowing '.') closed by Greg Couch
fixed: Please reopen this ticket if you have any problems.
3:30 PM Ticket #9512 (Unable to open .cxs files saved in v1.6.1.) closed by Greg Couch
fixed: Please reopen if you have any problems.
2:18 PM Ticket #9525 (DICOM Segmentations: hard to resize cursor using touchpad Shift-scroll) closed by Zach Pearson
fixed
2:03 PM Ticket #9960 (ChargeError during dockprep) closed by pett
fixed: Fix: …
1:50 PM Dev2023-12-4 edited by Tom Goddard
(diff)
1:40 PM Ticket #10282 (Surface transparency not preserved when playing trajectory) created by goddard@…
[…]
1:29 PM Ticket #10114 (Unknown task state) closed by Zach Pearson
fixed: Added that state to the enum in core/src/tasks.
1:26 PM Ticket #10204 (Segmentations tool divide-by-zero when open DICOM only has SEG (no CT ...) closed by Zach Pearson
fixed: I've made the plane viewers do something sensible when there's no …
12:38 PM Ticket #10281 (Output colors in OBJ format using a .mtl file) created by zberndsen@…
From: "Berndsen, Zachary via ChimeraX-users" …
10:52 AM Ticket #10276 (MemoryError saving map in session) closed by Tom Goddard
nonchimerax
10:24 AM Ticket #10278 (MemoryError opening mmCIF files) closed by pett
duplicate
10:23 AM Ticket #10277 (SyntaxError in volume.py) closed by pett
duplicate: Hi Jayda, At the time you downloaded it, the release had a …
10:18 AM Ticket #10280 (UnicodeDecodeError reading PDB file) created by sk0815142@…
[…]

Dec 3, 2023:

12:06 PM Ticket #10279 (StarMap: embedded null character in Rosetta input) created by chimerax-bug-report@…
[…]
3:10 AM Ticket #10278 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]

Dec 1, 2023:

7:34 PM Ticket #10277 (SyntaxError in volume.py) created by jjhammock42@…
[…]
6:48 PM Ticket #9214 (ChimeraX 1.6.1 can not save as mmcif format while computedSheets is true) closed by pett
fixed: The sheet-computation code was doing all the right things when merging …
12:47 PM Ticket #10276 (MemoryError saving map in session) created by chimerax-bug-report@…
[…]
9:50 AM Ticket #10275 (Syntax error in volume.py) closed by pett
fixed: Hi Zahra, There was an error (typo) in the release candidate …
9:45 AM Ticket #10274 (Crash reading PDB file) closed by pett
can't reproduce
9:43 AM Ticket #10273 (Crash in garbage collection) closed by pett
can't reproduce
9:38 AM Ticket #10272 (Bad atom pointer?) closed by pett
can't reproduce: Version 1.5 -- maybe it will have "fixed itself" by now…
9:31 AM Ticket #10271 (mcopy command missing) closed by pett
not a bug: Hi Krishna, You must have found the mcopy documentation by searching …
9:22 AM Ticket #10269 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:12 AM Ticket #10275 (Syntax error in volume.py) created by zahra.mashhadi@…
[…]
4:46 AM Ticket #10274 (Crash reading PDB file) created by chimerax-bug-report@…
[…]
3:20 AM Ticket #10273 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:59 AM Ticket #10272 (Bad atom pointer?) created by chimerax-bug-report@…
[…]
2:53 AM Ticket #10271 (mcopy command missing) created by kdr2001@…
[…]

Nov 30, 2023:

5:48 PM Ticket #10147 (Initial window placement offscreen) closed by pett
fixed: Committed a fix to the daily build (only): …
5:46 PM 2023-11-30 edited by Tom Goddard
(diff)
4:32 PM Ticket #10270 (need way to set full sequence of a chain) created by Greg Couch
It would be useful to be able to set the correct sequence to use for a …
3:39 PM Ticket #10268 (Movie recording not stopping) closed by Tom Goddard
duplicate: Duplicate of #10265.
2:58 PM Ticket #10269 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:56 PM Dev2023-11-27 edited by pett
(diff)
2:39 PM Ticket #10267 (SyntaxError in volume.py) closed by pett
duplicate
2:38 PM Ticket #10268 (Movie recording not stopping) created by rgong@…
[…] movie_2.mp4
2:37 PM Ticket #10267 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
2:02 PM Ticket #9994 (ChimeraX hangs saving a session, macOS Sonoma) closed by Tom Goddard
nonchimerax: Seems it was a non-responsive file system causing the file browser not …
1:59 PM Ticket #10079 (Colors of exported GLTF models don't match ChimeraX colors) closed by Tom Goddard
fixed: Fixed. Wrote colors in linear color space and read as linear color …
1:56 PM Ticket #10198 (Need a volume viewer opened trigger) closed by Tom Goddard
fixed: Seems the chimerax.core.tools.ADD_TOOL_INSTANCE trigger does what you need.
1:52 PM Ticket #10250 (HtmlView temp file name: Invalid argument) closed by Tom Goddard
can't reproduce: Get Invalid argument in Python open() for the path on Windows. This …
1:38 PM Ticket #10265 (Movie record records too many frames) closed by Tom Goddard
not a bug: Are you putting your movie recording commands in a script (.cxc) file? …
1:28 PM Ticket #10266 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Duplicate.
1:18 PM Ticket #10264 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:18 PM Ticket #10263 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Duplicate of #10262.
1:17 PM Ticket #10262 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:16 PM Ticket #10259 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:15 PM Ticket #10258 (SyntaxError in volume.py) closed by Tom Goddard
fixed: Fixed and release candidate build restarted to minimize the reporting …
1:11 PM Ticket #10266 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
12:51 PM Ticket #10265 (Movie record records too many frames) created by rgong@…
[…] movie_2.mp4
12:39 PM Ticket #10261 (SyntaxError in volume.py) closed by pett
duplicate
12:36 PM Ticket #10264 (SyntaxError in volume.py) created by d.veizaj@…
[…]
12:32 PM Ticket #10257 (Crash in event loop) closed by pett
limitation: Remote display
12:31 PM Ticket #10256 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
12:29 PM Ticket #10255 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
12:28 PM Ticket #10254 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
12:08 PM Ticket #10263 (SyntaxError in volume.py) created by eric.larquet@…
[…]
12:03 PM Ticket #10262 (SyntaxError in volume.py) created by eric.larquet@…
[…]
11:38 AM Ticket #10261 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
11:03 AM Ticket #10260 (move command ignores "atoms" option when frames specified) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. The code to pass to do the move at each …
11:00 AM Ticket #10260 (move command ignores "atoms" option when frames specified) created by Caroline.Stone@…
From: "Caroline Stone (JIC) via ChimeraX-users" …
10:44 AM Ticket #10259 (SyntaxError in volume.py) created by anthony.makwanda@…
[…]
8:58 AM Ticket #10258 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
5:06 AM Ticket #10257 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:57 AM Ticket #10256 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #10255 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
2:42 AM Ticket #10254 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]

Nov 29, 2023:

5:30 PM Ticket #8902 (Truncated HIS residue) closed by pett
fixed: Truncated histidines no longer cause Antechamber to run.
3:32 PM Ticket #10251 (Initial map colors identical) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. The volume color sequence was being …
3:05 PM Ticket #10253 (No volume series slider shown when opening series of TIFF files) closed by Tom Goddard
not a bug: Slider is working. The problem in this report is that a series of 2D …
2:01 PM Ticket #10253 (No volume series slider shown when opening series of TIFF files) created by goddard@…
[…]
12:51 PM Ticket #10252 (Bug reports incorrectly show two backslashes on Log as 3 backslashes) closed by Tom Goddard
wontfix: I made a html2text github issue for this. But that repository was last …
12:31 PM Ticket #10252 (Bug reports incorrectly show two backslashes on Log as 3 backslashes) created by goddard@…
[…]
11:59 AM Ticket #10251 (Initial map colors identical) created by asarnow@…
[…]
11:50 AM Ticket #10250 (HtmlView temp file name: Invalid argument) created by chimerax-bug-report@…
[…]
10:16 AM Ticket #10249 (Crash in event loop) closed by pett
can't reproduce
9:10 AM Ticket #10248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:09 AM Ticket #10247 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:07 AM Ticket #10245 (Restore new session in old ChimeraX) closed by pett
limitation
5:47 AM Ticket #10249 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:16 AM Ticket #10248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:24 AM Ticket #10247 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Nov 28, 2023:

7:57 PM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. Removed unnecessary …
7:24 PM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) reopened by Tom Goddard
Hi Greg, Maybe you know or can find this Python esoterica -- can a …
6:29 PM Ticket #10236 (Cannot update file history) closed by Tom Goddard
can't reproduce: I don't see any explanation for this error. Not able to reproduce it. …
6:01 PM Ticket #10246 (Bug reports change C:\\Users shown in log into C:\\\Users in bug report) closed by Tom Goddard
wontfix: This is most likely a bug in converting the HTML log panel html to …
5:50 PM Ticket #10246 (Bug reports change C:\\Users shown in log into C:\\\Users in bug report) created by goddard@…
[…]
5:10 PM Ticket #10234 (AlphaFold predict: wrapped C/C++ object of type ChimeraXHtmlView has ...) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. If user starts an AlphaFold prediction …
4:58 PM Ticket #10216 (Symbol in scipy library not found) closed by Tom Goddard
wontfix: Will investigate fixing if this is reported again. I don't see an …
4:31 PM Ticket #10245 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
2:20 PM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) closed by pett
fixed: Now just puts up a dialog saying "Out of disk space" with no …
11:50 AM Ticket #10243 (Relative model-map position not preserved) closed by Tom Goddard
can't reproduce: I tried saving an atomic model relative to a map in several ways and …
11:40 AM 2023-11-30 created by Tom Goddard
11:39 AM Dev2023-12-4 created by Tom Goddard
11:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:28 AM Ticket #10244 ("Direct" modeling doesn't handle target deletion relative to template) created by pett
[…] alignment.ali
11:07 AM Ticket #10243 (Relative model-map position not preserved) created by helen.duyvesteyn@…
[…]
10:23 AM Ticket #10242 (Wrong version of regex installed) closed by Tom Goddard
limitation: We can't support installing Toolshed bundles such as SEQCROW using M1 …
10:06 AM Ticket #10240 (Crash reading matrix) closed by Tom Goddard
duplicate: Duplicate of #10239. This is probably an ArtiaX bug not deleting a …
9:43 AM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) closed by Tom Goddard
nonchimerax: Mac M1 graphics driver crash in ChimeraX code …
9:20 AM Ticket #10241 (Cannot read .chimerax) closed by pett
not a bug: Hi Ennio, Ironically, ChimeraX cannot read .chimerax files. That is …
9:08 AM Ticket #10238 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Duc, Thanks for reporting this problem. This is a bug in the Qt …
9:06 AM Ticket #10237 (Crash in event loop) closed by pett
can't reproduce: Toolshed check was running at the time
9:02 AM Ticket #10235 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
8:57 AM Ticket #10232 (Crash in event loop) closed by pett
can't reproduce
5:17 AM Ticket #10242 (Wrong version of regex installed) created by andreapellegrini6698@…
[…]
4:24 AM Ticket #10241 (Cannot read .chimerax) created by ep204@…
[…]
3:58 AM Ticket #10240 (Crash reading matrix) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) created by chimerax-bug-report@…
[…]
3:26 AM Ticket #10238 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by minhducdkh@…
[…]
1:46 AM Ticket #10237 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:24 AM Ticket #10236 (Cannot update file history) created by chimerax-bug-report@…
[…]

Nov 27, 2023:

10:22 PM Ticket #10235 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
9:01 PM Ticket #10234 (AlphaFold predict: wrapped C/C++ object of type ChimeraXHtmlView has ...) created by chimerax-bug-report@…
[…]
5:49 PM Ticket #10233 (Crash dumping Python thread info) created by zrizvi@…
[…]
4:24 PM Ticket #10232 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:17 PM Dev2023-11-27 edited by Tom Goddard
(diff)
1:53 PM Ticket #10231 (surface zone with maxComponents option does not auto-update) closed by Tom Goddard
fixed: Fixed in daily and 1.7. Code that was handling maxComponents …
1:49 PM Ticket #10231 (surface zone with maxComponents option does not auto-update) created by goddard@…
[…]
11:26 AM Ticket #10230 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Daniel, You reported this problem 2 years ago and at that time I …
11:17 AM Ticket #10230 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by Dbarrero@…
[…]
10:59 AM Ticket #10221 (open_command needs to handle UnicodeError) closed by pett
fixed
10:52 AM Ticket #10229 (Crash in event loop) closed by pett
can't reproduce
10:49 AM Ticket #10227 ('Tasks' object has no attribute 'remove') closed by pett
duplicate
10:42 AM Ticket #10225 (Restore new session in old ChimeraX) closed by pett
limitation
10:37 AM Ticket #10224 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:35 AM Ticket #10223 (Crash when asked to register) closed by pett
can't reproduce
10:29 AM Ticket #10222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:22 AM Ticket #10220 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:21 AM Ticket #10219 (MemoryError opening mmCIF files) closed by pett
duplicate
10:15 AM Ticket #10217 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:48 AM Ticket #10214 (Unknown problem) closed by pett
can't reproduce: No actual problem/crash in the bug report.
9:45 AM Ticket #10213 (MemoryError opening mmCIF files) closed by pett
duplicate
12:09 AM Ticket #10229 (Crash in event loop) created by chimerax-bug-report@…
[…]

Nov 26, 2023:

8:34 PM Ticket #10228 (Can't download isolde from chimeraX) created by 12133050@…
[…]
5:10 AM Ticket #10227 ('Tasks' object has no attribute 'remove') created by chimerax-bug-report@…
[…]

Nov 25, 2023:

12:59 PM Ticket #10226 (Clipper: ArrayMemoryError updating surface) created by chimerax-bug-report@…
[…]

Nov 24, 2023:

8:52 PM Ticket #10225 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
2:47 PM Ticket #10224 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:38 PM Ticket #10223 (Crash when asked to register) created by chimerax-bug-report@…
[…]
5:21 AM Ticket #10222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
4:23 AM Ticket #10221 (open_command needs to handle UnicodeError) created by chimerax-bug-report@…
[…]
2:12 AM Ticket #10220 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
12:56 AM Ticket #10219 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]

Nov 23, 2023:

6:07 PM Ticket #10218 (ffmpeg failure) created by david.chalmers@…
[…]
10:15 AM Ticket #10217 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:31 AM Ticket #10216 (Symbol in scipy library not found) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #10215 (Crash in garbage collection while fetching mmCIF) created by haaris.safdari@…
[…]

Nov 22, 2023:

9:57 PM Ticket #10214 (Unknown problem) created by chimerax-bug-report@…
[…]
12:58 PM Ticket #10207 (Crash when coordinate values in PDB file are not numbers) closed by pett
can't reproduce: User first opens a PDB file with NaNs in it, which ChimeraX rejects. …
12:36 PM Ticket #10213 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
11:48 AM Ticket #10205 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: OpenGL error drawing side view. glClear() invalid framebuffer …
11:45 AM Ticket #10212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Mark, Thanks for reporting this problem. This is a bug in the Qt …
11:43 AM Ticket #10211 (Crash opening PDB file) closed by pett
can't reproduce
11:17 AM Ticket #10212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by maf95@…
[…]
11:00 AM Ticket #10211 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:38 AM Ticket #10210 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Xavi, Thanks for reporting this problem. This is a bug in the Qt …
10:05 AM Ticket #10209 (MemoryError opening mmCIF files) closed by pett
duplicate: Hi Cristina, Thanks for reporting this problem. It is fixed in the …
9:15 AM Ticket #10208 (KeyError matching selected regions) closed by pett
duplicate: Hi Francesco, Thanks for reporting this problem. It is fixed in the …
7:29 AM Ticket #10210 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by x.aran-guiu@…
[…]
2:51 AM Ticket #10209 (MemoryError opening mmCIF files) created by cristina.moniobaca@…
[…]

Nov 21, 2023:

11:22 PM Ticket #10208 (KeyError matching selected regions) created by francesco.musiani@…
[…]
6:12 PM Ticket #10207 (Crash when coordinate values in PDB file are not numbers) created by chimerax-bug-report@…
[…]
5:40 PM Ticket #10206 (Crop mouse mode in VR with tilted slab moves wrong slab face) closed by Tom Goddard
fixed: Fixed in daily build and 1.7 release candidates dated Nov 22, 2023. …
5:25 PM Ticket #10206 (Crop mouse mode in VR with tilted slab moves wrong slab face) created by phil.cruz@…
[…]
2:43 PM Ticket #10205 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
1:33 PM Ticket #10204 (Segmentations tool divide-by-zero when open DICOM only has SEG (no CT ...) created by Elaine Meng
[…]
11:20 AM Ticket #10202 (Session restore: invalid load key) closed by pett
duplicate: Version 1.1
11:17 AM Ticket #10200 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate: Hi Nikhil, Thanks for reporting this problem. It is fixed in the 1.7 …
11:16 AM Dev2023-11-27 created by Tom Goddard
11:15 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:04 AM Ticket #10203 (Unknown crash) created by chencarina21@…
[…]
9:55 AM Ticket #10202 (Session restore: invalid load key) created by chimerax-bug-report@…
[…]
9:47 AM Ticket #10201 (Add a VR shortcut to the toolbar) created by Zach Pearson
Steffen Thomas requested this on the mailing list. Hello I'm …
9:41 AM Ticket #10199 (Crash in event loop) closed by pett
can't reproduce
9:39 AM Ticket #10197 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce

Nov 20, 2023:

6:19 PM Ticket #10200 (Histogram widget: operands could not be broadcast together with shapes) created by nikhil.bharambe@…
[…]
5:57 PM Ticket #10199 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:01 PM Ticket #10198 (Need a volume viewer opened trigger) created by Zach Pearson
It would be helpful if there was a trigger that fired when the volume …
3:33 PM Dev2023-11-20 edited by Tom Goddard
(diff)
3:32 PM Dev2023-11-20 edited by Tom Goddard
(diff)
2:11 PM Ticket #10197 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
12:43 PM Ticket #10196 (Segmentations saved in sessions don't get added to seg tool menu) created by Zach Pearson
12:43 PM Ticket #10174 (Session restore DICOM error) closed by Zach Pearson
fixed: Should be fixed tomorrow. I added guards around all the modes so that …
11:51 AM Ticket #10184 (MemoryError opening mmCIF files) closed by pett
fixed: Hi Ralph, Great to hear that the release candidate worked for you! …
11:46 AM Ticket #10187 (angle command on 3 centroids claims 3 were not specified) closed by pett
fixed: Fixed on both branches: …
11:39 AM Ticket #9849 (DICOM: Segmentations list not cleared when all models closed) closed by Zach Pearson
fixed: Now when you close a segmentation in the model panel it should also …
11:13 AM Ticket #9617 ("pip install" failure) closed by Zach Pearson
fixed: Works in today's build. Greg rewrote that file a little while ago, the …
11:09 AM Ticket #9967 (3D segmentation cursor doesn't always spawn near the 3D model) closed by Zach Pearson
fixed
11:07 AM Ticket #10195 (Crash in Qt event loop in _cursor_position possibly adjusting volume ...) closed by Tom Goddard
can't reproduce: Likely Qt bug in old ChimeraX 1.3.
11:02 AM Ticket #10195 (Crash in Qt event loop in _cursor_position possibly adjusting volume ...) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #10192 (Hysteresis with clip cap transparency) closed by Tom Goddard
not a bug: The flat surface cap where you clip a surface can be made transparent …
10:42 AM Ticket #10190 (Session restore: MemoryError restoring map) closed by Tom Goddard
limitation: Ran out of memory opening a ChimeraX session. Memory allocation of …
10:39 AM Ticket #10189 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:38 AM Ticket #10188 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:34 AM Ticket #10194 (Session restore: Execution of 'PseudobondManager' object's 'group_map' ...) closed by pett
can't reproduce: Would be 1000x easier to debug in current versions of ChimeraX.
10:23 AM Ticket #10191 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
7:18 AM Ticket #10194 (Session restore: Execution of 'PseudobondManager' object's 'group_map' ...) created by chimerax-bug-report@…
[…]
7:05 AM Ticket #10193 (XMAS session restore: 'NoneType' object has no attribute ...) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #10192 (Hysteresis with clip cap transparency) created by micaela.boierosanders@…
[…]

Nov 19, 2023:

7:44 PM Ticket #10191 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:48 AM Ticket #10190 (Session restore: MemoryError restoring map) created by chimerax-bug-report@…
[…]
1:54 AM Ticket #10189 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

Nov 18, 2023:

12:54 PM Ticket #10188 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]

Nov 17, 2023:

4:54 PM Ticket #10152 (Sesson restore: wrapped C/C++ object of type DICOMTable has been deleted) closed by Zach Pearson
fixed: Should be fixed in tomorrow's daily build and the 1.7 release.
4:48 PM Ticket #10171 (DICOM: Segmentations tool not happy if more than one medical image is ...) closed by Zach Pearson
fixed
3:48 PM Ticket #10180 ("devel build" not using/finding bundle_info.xml) closed by Zach Pearson
not a bug
11:29 AM Ticket #10186 (Allow angle command to specify 4 atoms defining two vectors) closed by Tom Goddard
fixed: Done. Made angle command accept 3 or 4 atoms or centroids (although …
11:16 AM Ticket #10187 (angle command on 3 centroids claims 3 were not specified) created by goddard@…
[…]
10:42 AM Ticket #10186 (Allow angle command to specify 4 atoms defining two vectors) created by a.rohou@…
[…]
9:12 AM Ticket #10185 (MemoryError opening mmCIF files) closed by pett
duplicate: Follow up to #10184
8:58 AM Ticket #10181 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
7:42 AM Ticket #10185 (MemoryError opening mmCIF files) created by r.loring@…
[…]
7:38 AM Ticket #10184 (MemoryError opening mmCIF files) created by r.loring@…
[…]
5:21 AM Ticket #10183 (transparency command) created by cjh188@…
[…]
2:52 AM Ticket #10182 (ISOLDE: There is no registered Platform called "OpenCL") created by sean.connell@…
[…]
2:44 AM Ticket #10181 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Nov 16, 2023:

2:24 PM Ticket #10179 (ISOLDE: RuntimeError: Release Object) closed by pett
duplicate: Duplicate of #10177
2:23 PM Ticket #10178 (ISOLDE: RuntimeError: Release Object) closed by pett
duplicate: Duplicate of #10177
2:20 PM Ticket #10177 (ISOLDE: RuntimeError: Release Object) closed by pett
can't reproduce: Similarly old versions
2:18 PM Ticket #10180 ("devel build" not using/finding bundle_info.xml) created by kkssy141@…
[…]
2:17 PM Ticket #10179 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:17 PM Ticket #10176 (ISOLDE: wrapped C/C++ object of type QComboBox has been deleted) closed by pett
can't reproduce: Very old ChimeraX and ISOLDE
2:15 PM Ticket #10178 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:08 PM Ticket #10177 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:05 PM Ticket #10168 (Error when no output models from Modeller) closed by pett
fixed: Fix: …
2:01 PM Ticket #10176 (ISOLDE: wrapped C/C++ object of type QComboBox has been deleted) created by chimerax-bug-report@…
[…]
12:52 PM Ticket #10172 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Hi Dewight, I would recommend upgrading to the 1.6.1 release or the …
12:47 PM Ticket #10169 (Crash in event loop during a Qt mouse down event) closed by pett
can't reproduce
12:18 PM 2023-11-16 edited by Tom Goddard
(diff)
10:59 AM Ticket #10175 (Toggling rapid access stops plane viewer redrawing) created by Zach Pearson
10:39 AM Ticket #10174 (Session restore DICOM error) created by phil.cruz@…
[…]
10:29 AM Ticket #10173 (Toolshed upload slow) created by Tristan Croll
[…]
10:23 AM Ticket #10172 (Crash showing Rapid Access at startup) created by dewight.wiiliams@…
[…]
10:14 AM Ticket #10166 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver.
9:47 AM Ticket #10167 (So many errors) closed by pett
can't reproduce
9:44 AM Ticket #10165 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:42 AM Ticket #10164 (Windows blank) closed by pett
nonchimerax: Hi Delong, You need to install an Nvidia driver for your graphics …
9:35 AM Ticket #10163 (MemoryError opening mmCIF) closed by pett
duplicate
9:32 AM Ticket #10171 (DICOM: Segmentations tool not happy if more than one medical image is ...) created by Elaine Meng
[…]
8:55 AM Ticket #10170 (Read ORCA: could not broadcast input array) created by andreapellegrini6698@…
[…]
8:27 AM Ticket #10169 (Crash in event loop during a Qt mouse down event) created by chimerax-bug-report@…
[…]
8:04 AM Ticket #10168 (Error when no output models from Modeller) created by chimerax-bug-report@…
[…]
7:31 AM Ticket #10167 (So many errors) created by chimerax-bug-report@…
[…]
6:26 AM Ticket #10166 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
3:39 AM Ticket #10112 (Crash in background load of OpenMM forcefields) closed by Tristan Croll
fixed: Unless there's something deeper going on (who knows... I've never been …
2:46 AM Ticket #10130 ('AdaptiveDistanceRestraintMgr' object has no attribute '_c_pointer') closed by Tristan Croll
fixed: For ISOLDE 1.7, if the manager for a given set of restraints is closed …

Nov 15, 2023:

11:07 PM Ticket #10165 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #10164 (Windows blank) created by delong.sun@…
[…] chimerax.bmp
6:37 PM Ticket #10163 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
6:01 PM ChangeLog edited by Elaine Meng
(diff)
5:57 PM Ticket #9920 (Turning off plane guidelines shouldn't reset the viewers to the ...) closed by Zach Pearson
fixed: They no longer do. I'm not sure what fixed this, but in the course of …
4:22 PM Ticket #9904 (Starting a segmentation in 3d then switching to orthoplanes causes ...) closed by Zach Pearson
fixed: I think this is fixed, though I'm not quite sure which of today's …
2:39 PM Ticket #10162 (Axial and coronal pucks not aligned with middle slice) closed by Zach Pearson
fixed
1:29 PM Ticket #10153 (Segger: library not loaded: libsz.2.dylib) closed by Tom Goddard
fixed: Fixed in daily build and 1.7 release candidate. I added the missing …
11:47 AM Ticket #10162 (Axial and coronal pucks not aligned with middle slice) created by Zach Pearson
When the segmentation tool first opens the axial and coronal …
11:33 AM Ticket #10161 (Detect multichannel DICOMs and group them together) created by Zach Pearson
11:31 AM Ticket #9965 (Segmentations opened from files give traceback on edit) closed by Zach Pearson
fixed: I restored the code that tracked the relationships between series. …
11:07 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) reopened by pett
9:54 AM Ticket #10160 (Segmentations: UnboundLocalError) closed by Zach Pearson
fixed: Hi Phil, I just fixed this yesterday and it should work in today's …
9:47 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) closed by pett
nonchimerax: Maybe we could put something in the top-level error handling that if …
9:43 AM Ticket #10158 (sqm failure) closed by pett
limitation
9:41 AM Ticket #10157 (Crash in event loop in QDockWidget::event()) closed by pett
can't reproduce
9:35 AM Ticket #10155 (Crash in event loop: The X11 connection broke: I/O error (code 1)) closed by pett
can't reproduce: Seems to be the same machine as #10154
9:34 AM Ticket #10154 (Crash using color chooser) closed by pett
can't reproduce: Is this an Intel Mac running Linux?!?
8:29 AM Ticket #10160 (Segmentations: UnboundLocalError) created by phil.cruz@…
[…]
8:13 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) created by chimerax-bug-report@…
[…]
8:01 AM Ticket #10158 (sqm failure) created by chimerax-bug-report@…
[…]
5:36 AM Ticket #10157 (Crash in event loop in QDockWidget::event()) created by chimerax-bug-report@…
[…]
3:33 AM Ticket #10156 (Various DCD errors) created by chimerax-bug-report@…
[…]
12:06 AM Ticket #10155 (Crash in event loop: The X11 connection broke: I/O error (code 1)) created by chimerax-bug-report@…
[…]

Nov 14, 2023:

10:10 PM Ticket #10154 (Crash using color chooser) created by chimerax-bug-report@…
[…]
5:29 PM Ticket #10076 (VRML output for 3D color printers) closed by Tom Goddard
fixed: If it is still desired to allow gltf output to use all vertex colors, …
2:08 PM ChangeLog edited by Elaine Meng
(diff)
2:02 PM Ticket #10153 (Segger: library not loaded: libsz.2.dylib) created by rposert@…
[…]
11:33 AM Dev2023-11-20 created by Tom Goddard
11:31 AM 2023-11-16 created by Tom Goddard
11:29 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:00 AM Ticket #10151 (MemoryError opening mmCIF files) closed by pett
duplicate
8:59 AM Ticket #10150 (Crash in garbage collection while rebuilding nucleotides data) closed by pett
can't reproduce
8:51 AM Ticket #10148 (Crash in event loop) closed by pett
can't reproduce
8:42 AM Ticket #10146 (Crash in event loop) closed by pett
can't reproduce
7:54 AM Ticket #10152 (Sesson restore: wrapped C/C++ object of type DICOMTable has been deleted) created by chimerax-bug-report@…
[…]
6:40 AM Ticket #10151 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
4:29 AM Ticket #10150 (Crash in garbage collection while rebuilding nucleotides data) created by chimerax-bug-report@…
[…]
4:14 AM Ticket #10149 (ArtiaX: float division by zero) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #10148 (Crash in event loop) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.