![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 23 months ago
Closed 23 months ago
#10313 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-12.2-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000102850580 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 1400000,
"procLaunch" : "2023-12-08 10:56:57.7221 -0500",
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"procStartAbsTime" : 33257713526346,
"coalitionID" : 176170,
"osVersion" : {
"train" : "macOS 12.2",
"build" : "21D49",
"releaseType" : "User"
},
"captureTime" : "2023-12-08 17:52:57.5778 -0500",
"incident" : "A142AB9C-653E-4AD6-B5E2-CB704743162F",
"bug_type" : "309",
"pid" : 10375,
"procExitAbsTime" : 33731847568538,
"translated" : false,
"cpuType" : "ARM-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"C6671C55-91C2-565C-9A4C-C1E90621B176","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "00D13C39-DD35-E6FB-8EF2-3308A6348C79",
"wakeTime" : 5,
"sleepWakeUUID" : "7401DC07-5840-4521-A5D9-B505C8C4AE53",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 4335124456\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10264c000-102650000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\nVM - Compressor failed a blocking pager_get\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 4335124456\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10264c000-102650000 [ 16K] r-x\/r-x SM=COW ...acOS\/ChimeraX",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/pombeboyx/Library/Containers/com.apple.mail/Data/Library/Mail
> Downloads/E3C6DABE-D28E-44E5-ACD3-3EE486047F67/Mrc1-like-H3-H4-after_energy_minimize_rank1.pdb"
> format pdb
Chain information for Mrc1-like-H3-H4-after_energy_minimize_rank1.pdb #1
---
Chain | Description
A | No description available
B C | No description available
D E | No description available
> hide atoms
> show cartoons
> set bgColor white
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Mismatch between Cocoa '\x0' and Carbon 's' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\u00df' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\u00cd' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
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Mismatch between Cocoa '\x0' and Carbon '\x13' for virtual key 1 with
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QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> color /D,E dark green
> color /C,D blue
> color /B,C light blue
> color /B,C royal blue
> color /D,E dark green
> color /B violet
> color /A medium violet red
> lighting soft
> graphics silhouettes true
> select /D,E 82
Expected a keyword
> show atoms
> undo
> select /D,E:82
32 atoms, 30 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 32 atom styles
> color sel byhetero
> undo
> select /D,E:92
44 atoms, 42 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 44 atom styles
> color sel byhetero
> select clear
> select /A:60
22 atoms, 21 bonds, 1 residue, 1 model selected
Alignment identifier is 1/A
> select /A:61
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:61
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:63
15 atoms, 14 bonds, 1 residue, 1 model selected
> select /A:63
15 atoms, 14 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 15 atom styles
> color sel byhetero
> select /A:67
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:67-68
27 atoms, 26 bonds, 2 residues, 1 model selected
> select /A:27-40,49-80,82-84,86-88,92-120,123-128,130-136
1537 atoms, 1533 bonds, 94 residues, 1 model selected
> select /A:68
15 atoms, 14 bonds, 1 residue, 1 model selected
> select /A:67-68
27 atoms, 26 bonds, 2 residues, 1 model selected
> select /A:67
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:67
12 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byhetero
> style sel stick
Changed 12 atom styles
> select clear
> ui mousemode right distance
> distance /E:92@NZ /A:63@OE2
Distance between /E LYS 92 NZ and /A GLU 63 OE2: 2.8Å
> distance /D:92@NZ /A:67@OD1
Distance between /D LYS 92 NZ and /A ASP 67 OD1: 3.2Å
> distance /A:67@OD2 /D:92@NZ
Distance between /A ASP 67 OD2 and /D LYS 92 NZ: 2.6Å
> hide #2.1 models
> hide #!2 models
> show #!2 models
> hide #1 models
> close #2
> show #1 models
> ui mousemode right label
> ui mousemode right distance
> distance /E:92@NZ /A:63@OE2
Distance between /E LYS 92 NZ and /A GLU 63 OE2: 2.8Å
> distance /A:67@OD2 /D:92@NZ
Distance between /A ASP 67 OD2 and /D LYS 92 NZ: 2.6Å
> hide #2.1 models
> save Mrc1_Histone_Electrostatic.png pixelSize 0.015
> show #2.1 models
> open "/Users/pombeboyx/Dropbox (HMS)/Danesh-Juntao
> shared/2023-Mrc1-manuscript_current/2023-04_Science version/Figures-tables-
> movies-supplementary AlphaFold data/Materials/Materials for Fig. S19 -
> Modeling the yeast replisome/3-Parental histone on replisome
> session/2023-07-02-Replisome parental histones FACT.cxs"
opened ChimeraX session
> select #1/B,N
2360 atoms, 2384 bonds, 297 residues, 1 model selected
> hide sel surfaces
> select clear
> hide #4#5.1-5,7#!1-3#!5.6 cartoons
> undo
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 76 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select #1/B,N
2360 atoms, 2384 bonds, 297 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select #3/A
7762 atoms, 7944 bonds, 955 residues, 1 model selected
> hide sel cartoons
> select clear
> select #3/C
693 atoms, 703 bonds, 1 pseudobond, 88 residues, 2 models selected
> hide sel cartoons
> select #1/X
10990 atoms, 11092 bonds, 7 pseudobonds, 665 residues, 2 models selected
> hide sel cartoons
> hide sel surfaces
> hide #5.1 models
> hide #5.2 models
> hide #5.3 models
> hide #5.4 models
> hide #5.5 models
> hide #!5.6 models
> show #!5.6 models
> hide #!5.6 models
> hide #5.7 models
> show #!5.6 models
> show #5.5 models
> hide #5.5 models
> select #2/C
2817 atoms, 2874 bonds, 356 residues, 1 model selected
> hide sel cartoons
> select #4/A
5158 atoms, 5257 bonds, 638 residues, 1 model selected
> hide sel cartoons
> select #3/B
3666 atoms, 3761 bonds, 460 residues, 1 model selected
> hide sel cartoons
> select #1/I,J
1878 atoms, 2015 bonds, 50 pseudobonds, 59 residues, 2 models selected
> hide sel surfaces
> select clear
> select #3/C
693 atoms, 703 bonds, 1 pseudobond, 88 residues, 2 models selected
> show sel cartoons
> select clear
> color #1/B,N pink
> select clear
Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> show #!14 models
> show #!12 models
> hide #!12 models
> show #7 models
> select #1/G
6693 atoms, 6778 bonds, 2 pseudobonds, 422 residues, 2 models selected
> hide sel cartoons
> hide sel surfaces
> color #7/E violet
> color #7/E mediumblue dark violet
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color #7/E medium violet red
> color #7/G khaki
> color #7/A,B royal blue
> color #7/C,D dark green
> color #14/A,B
> select #14/A,B
16145 atoms, 16451 bonds, 1990 residues, 1 model selected
> hide sel surfaces
> select clear
> select #5.6/F
5704 atoms, 5820 bonds, 691 residues, 1 model selected
> hide sel surfaces
> select clear
> select #14/B
7935 atoms, 8078 bonds, 971 residues, 1 model selected
> select clear
> select #5.6/F
5704 atoms, 5820 bonds, 691 residues, 1 model selected
> hide sel cartoons
> select clear
> select #2/A
5704 atoms, 5820 bonds, 691 residues, 1 model selected
> hide sel cartoons
> select clear
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
Alignment identifier is 2/B
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28-45
142 atoms, 142 bonds, 18 residues, 1 model selected
> select #2/B:18-19
18 atoms, 17 bonds, 2 residues, 1 model selected
> select #2/B:18-34
143 atoms, 143 bonds, 17 residues, 1 model selected
> select #2/B:1
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #2/B:1-34
281 atoms, 282 bonds, 34 residues, 1 model selected
> hide sel cartoons
> select #2/B:34-35
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #2/B:28-35
65 atoms, 64 bonds, 8 residues, 1 model selected
> show sel cartoons
> select clear
> select #4
11583 atoms, 11772 bonds, 1447 residues, 1 model selected
> show sel cartoons
> select clear
> select #1/E
4599 atoms, 4685 bonds, 3 pseudobonds, 566 residues, 2 models selected
> hide sel cartoons
> hide sel surfaces
> select #1/@
Expected an objects specifier or a keyword
> select #1/2
5263 atoms, 5352 bonds, 5 pseudobonds, 662 residues, 3 models selected
Alignment identifier is 1/2
> select #1/2:739-867
1076 atoms, 1093 bonds, 129 residues, 1 model selected
> select #1/2:709
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/2:181-709
4138 atoms, 4209 bonds, 529 residues, 1 model selected
> hide sel cartoons
> hide sel surfaces
> undo
> select #2/C,D
5355 atoms, 5464 bonds, 676 residues, 1 model selected
> hide sel cartoons
> select #1/2
5263 atoms, 5352 bonds, 5 pseudobonds, 662 residues, 3 models selected
> select #1/2:180
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/2:180-709
4147 atoms, 4218 bonds, 530 residues, 1 model selected
> hide sel cartoons
> hide sel surfaces
Drag select of core_replisome_5 SES surface, 475 of 714458 triangles, 1
residues
> select clear
> save Mrc1_D_Site.png pixelSize 0.025
> save /Users/pombeboyx/Desktop/Mrc1-D-site.png width 4000 height 2768
> supersample 3 transparentBackground true
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Chip: Apple M1 Pro
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 7429.81.3
OS Loader Version: 7429.81.3
Software:
System Software Overview:
System Version: macOS 12.2 (21D49)
Kernel Version: Darwin 21.3.0
Time since boot: 49 days 8:55
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-XMAS: 1.1.2
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
et-xmlfile: 1.1.0
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openpyxl: 3.1.2
openvr: 1.23.701
packaging: 21.3
pandas: 1.5.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
QtRangeSlider: 0.1.5
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
seaborn: 0.12.2
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 23 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 23 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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