Unable to restore objects of NewerVersionQuery class

[helen.duyvesteyn@…]

The following bug report has been submitted:
Platform:        macOS-13.6-arm64-arm-64bit
ChimeraX Version: 1.7.dev202310070039 (2023-10-07 00:39:11 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7.dev202310070039 (2023-10-07)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/hmed/Downloads/cryosparc_P1110_J16_class_04_00011_volume.mrc

Opened cryosparc_P1110_J16_class_04_00011_volume.mrc as #1, grid size
140,140,140, pixel 2.92, shown at level 0.411, step 1, values float32  

> volume #1 level 0.2967

> open /Users/hmed/Downloads/cryosparc_P1110_J16_class_03_00011_volume.mrc

Opened cryosparc_P1110_J16_class_03_00011_volume.mrc as #2, grid size
140,140,140, pixel 2.92, shown at level 0.395, step 1, values float32  

> volume #2 level 0.305

> volume #2 level 0.2703

> open /Users/hmed/Downloads/cryosparc_P1110_J16_class_02_00011_volume.mrc

Opened cryosparc_P1110_J16_class_02_00011_volume.mrc as #3, grid size
140,140,140, pixel 2.92, shown at level 0.435, step 1, values float32  

> volume #3 level 0.2677

> volume #3 level 0.2702

> open /Users/hmed/Downloads/cryosparc_P1110_J16_class_00_00011_volume.mrc
> /Users/hmed/Downloads/cryosparc_P1110_J16_class_01_00011_volume.mrc

Opened cryosparc_P1110_J16_class_00_00011_volume.mrc as #4.1, grid size
140,140,140, pixel 2.92, shown at level 0.44, step 1, values float32  
Opened cryosparc_P1110_J16_class_01_00011_volume.mrc as #4.2, grid size
140,140,140, pixel 2.92, shown at level 0.426, step 1, values float32  

> volume #4.1 level 0.2965

> volume #4.2 level 0.2834

> select add #2

2 models selected  

> ui mousemode right "rotate selected models"

> select subtract #2

Nothing selected  

> select add #2

2 models selected  

> view matrix models
> #2,0.7794,-0.60424,0.16564,135.11,0.6241,0.77203,-0.12028,-59.65,-0.055204,0.19712,0.97882,-24.187

> view matrix models
> #2,0.37971,-0.90934,-0.17006,349.26,0.79758,0.41493,-0.43783,41.478,0.4687,0.030615,0.88283,-80.328

> view matrix models
> #2,0.36019,-0.85804,-0.3661,382.95,0.68988,0.50916,-0.5146,60.531,0.62796,-0.067213,0.77534,-71.81

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.36019,-0.85804,-0.3661,406.81,0.68988,0.50916,-0.5146,-33.553,0.62796,-0.067213,0.77534,-214.05

> view matrix models
> #2,0.36019,-0.85804,-0.3661,431.21,0.68988,0.50916,-0.5146,71.801,0.62796,-0.067213,0.77534,-113.86

> view matrix models
> #2,0.36019,-0.85804,-0.3661,430.69,0.68988,0.50916,-0.5146,73.177,0.62796,-0.067213,0.77534,-113.86

> view matrix models
> #2,0.36019,-0.85804,-0.3661,437.34,0.68988,0.50916,-0.5146,87.361,0.62796,-0.067213,0.77534,-95.091

> view matrix models
> #2,0.36019,-0.85804,-0.3661,376.61,0.68988,0.50916,-0.5146,56.355,0.62796,-0.067213,0.77534,-81.818

> view matrix models
> #2,0.36019,-0.85804,-0.3661,356.32,0.68988,0.50916,-0.5146,-57.113,0.62796,-0.067213,0.77534,-114.07

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.43903,-0.82214,-0.36241,331.78,0.73727,0.56019,-0.37766,-105.36,0.51351,-0.10139,0.85207,-98.853

> view matrix models
> #2,0.31167,-0.87867,-0.36166,369.75,0.6508,0.47473,-0.59253,-26.028,0.69233,-0.050694,0.7198,-119.55

> view matrix models
> #2,0.12454,-0.94738,-0.29489,409.22,0.42653,0.31946,-0.84618,104.23,0.89586,-0.020398,0.44387,-111.93

> view matrix models
> #2,0.17838,-0.92951,-0.32279,400.02,0.50392,0.36806,-0.7814,64.937,0.84513,-0.02327,0.53406,-119.15

> view matrix models
> #2,0.67819,-0.69108,-0.24992,232.15,0.73105,0.66914,0.13348,-230.57,0.074987,-0.27323,0.95902,5.9507

> view matrix models
> #2,0.40934,-0.83601,-0.36541,341.42,0.72181,0.5417,-0.43076,-87.525,0.55806,-0.087434,0.82518,-105.52

> view matrix models
> #2,0.7951,-0.60144,-0.077936,154.36,0.55483,0.66948,0.49393,-267.39,-0.2449,-0.43597,0.866,124.92

> view matrix models
> #2,0.83008,-0.55279,0.07344,106.25,0.3542,0.62437,0.6962,-257.56,-0.43071,-0.55189,0.71408,218.37

> view matrix models
> #2,0.83154,-0.54667,0.098446,99.594,0.31817,0.61404,0.72231,-253.26,-0.45532,-0.5693,0.68453,233.09

> view matrix models
> #2,0.83154,-0.54668,0.098404,99.605,0.31823,0.61405,0.72227,-253.26,-0.45528,-0.56928,0.68458,233.06

> view matrix models
> #2,0.79259,-0.60392,-0.084153,156.66,0.56235,0.67061,0.48379,-267.12,-0.23574,-0.43077,0.87113,120.91

> view matrix models
> #2,0.82583,-0.56273,0.036613,116.68,0.40587,0.63819,0.65421,-262.6,-0.39151,-0.5254,0.75543,196.34

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.82583,-0.56273,0.036613,115.13,0.40587,0.63819,0.65421,-190.63,-0.39151,-0.5254,0.75543,243

> ui mousemode right "move picked models"

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.94959,-0.30651,0.065787,31.22,0.21622,0.79232,0.5705,-165.2,-0.22699,-0.52752,0.81866,196.11

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.94959,-0.30651,0.065787,51.107,0.21622,0.79232,0.5705,-135.25,-0.22699,-0.52752,0.81866,178.2

> view matrix models
> #2,0.94959,-0.30651,0.065787,50.98,0.21622,0.79232,0.5705,-130.03,-0.22699,-0.52752,0.81866,181.62

> ui tool show "Fit in Map"

> fitmap #2 inMap #3

Fit map cryosparc_P1110_J16_class_03_00011_volume.mrc in map
cryosparc_P1110_J16_class_02_00011_volume.mrc using 141990 points  
correlation = 0.9425, correlation about mean = 0.3671, overlap = 1.388e+04  
steps = 84, shift = 17.5, angle = 9.39 degrees  
  
Position of cryosparc_P1110_J16_class_03_00011_volume.mrc (#2) relative to
cryosparc_P1110_J16_class_02_00011_volume.mrc (#3) coordinates:  
Matrix rotation and translation  
0.94722139 -0.23824575 0.21450079 15.64189349  
0.08534058 0.83235346 0.54763555 -95.10650032  
-0.30901231 -0.50042649 0.80875504 204.62325669  
Axis -0.86231541 0.43073158 0.26623756  
Axis point 0.00000000 306.63418797 267.55628290  
Rotation angle (degrees) 37.42354573  
Shift along axis 0.02477765  
  

> fitmap #2 inMap #3

Fit map cryosparc_P1110_J16_class_03_00011_volume.mrc in map
cryosparc_P1110_J16_class_02_00011_volume.mrc using 141990 points  
correlation = 0.9425, correlation about mean = 0.3671, overlap = 1.388e+04  
steps = 40, shift = 0.0527, angle = 0.00882 degrees  
  
Position of cryosparc_P1110_J16_class_03_00011_volume.mrc (#2) relative to
cryosparc_P1110_J16_class_02_00011_volume.mrc (#3) coordinates:  
Matrix rotation and translation  
0.94726407 -0.23815985 0.21440772 15.65413892  
0.08529404 0.83232091 0.54769227 -95.11904604  
-0.30889433 -0.50052150 0.80874131 204.66715910  
Axis -0.86243691 0.43055626 0.26612756  
Axis point 0.00000000 306.65839662 267.56766357  
Rotation angle (degrees) 37.42371569  
Shift along axis 0.01276322  
  

> volume #4.1 level 0.2389

> lighting soft

> set bgColor white

> set bgColor #ffffff00

> select subtract #2

Nothing selected  

> ui tool show "Side View"

> lighting full

> graphics silhouettes true

> lighting simple

> lighting full

> lighting soft

> volume #2 color #8cdcff

> lighting full

> open /Users/hmed/Downloads/cryosparc_P1110_J21_002_volume_map.mrc

Opened cryosparc_P1110_J21_002_volume_map.mrc as #5, grid size 140,140,140,
pixel 2.92, shown at level 0.848, step 1, values float32  

> volume #5 level 0.3685

> open /Users/hmed/Downloads/[NUMBER].pdb

[NUMBER].pdb title:  
Crystal structure of hepatitis A virus [more info...]  
  
Chain information for [NUMBER].pdb  
---  
Chain | Description  
6.1/A 6.2/A 6.3/A 6.4/A 6.5/A 6.6/A 6.7/A | No description available  
6.1/B 6.2/B 6.3/B 6.4/B 6.5/B 6.6/B 6.7/B | No description available  
6.1/C 6.2/C 6.3/C 6.4/C 6.5/C 6.6/C 6.7/C | No description available  
  

> open
> /Users/hmed/Documents/fmdv/SAT3/20231018_krios_SAT3Z__W4_W_93C_FAE_grid1/J68_FAE_ori.mrc

Opened J68_FAE_ori.mrc as #7, grid size 400,400,400, pixel 1.35, shown at
level 0.121, step 2, values float32  

> select add #5

3 models selected  

> view matrix models #5,1,0,0,-206.86,0,1,0,-201.73,0,0,1,-200.34

> undo

> select add #6.7

5767 atoms, 5907 bonds, 1 pseudobond, 736 residues, 5 models selected  

> select add #6.6

11534 atoms, 11814 bonds, 2 pseudobonds, 1472 residues, 7 models selected  

> select add #6

40369 atoms, 41349 bonds, 7 pseudobonds, 5152 residues, 18 models selected  

> view matrix models
> #5,1,0,0,-202,0,1,0,-197.8,0,0,1,-193.93,#6,1,0,0,-202,0,1,0,-197.8,0,0,1,-193.93

> view matrix models
> #5,1,0,0,-200.48,0,1,0,-199.05,0,0,1,-205.4,#6,1,0,0,-200.48,0,1,0,-199.05,0,0,1,-205.4

> select subtract #5

40369 atoms, 41349 bonds, 7 pseudobonds, 5152 residues, 15 models selected  

> select subtract #6

Nothing selected  

> fitmap #5 inMap #7

Fit map cryosparc_P1110_J21_002_volume_map.mrc in map J68_FAE_ori.mrc using
154628 points  
correlation = 0.3193, correlation about mean = 0.08491, overlap = 4055  
steps = 64, shift = 6.36, angle = 0.00637 degrees  
  
Position of cryosparc_P1110_J21_002_volume_map.mrc (#5) relative to
J68_FAE_ori.mrc (#7) coordinates:  
Matrix rotation and translation  
1.00000000 -0.00006288 0.00007540 -204.11024615  
0.00006288 1.00000000 -0.00005233 -204.11440467  
-0.00007539 0.00005234 1.00000000 -204.10456268  
Axis 0.47040009 0.67768752 0.56521092  
Axis point -85575.03465860 0.00000000 525363.21534397  
Rotation angle (degrees) 0.00637429  
Shift along axis -349.70138984  
  

> select add #6

40369 atoms, 41349 bonds, 7 pseudobonds, 5152 residues, 15 models selected  

> fitmap sel inMap #5

Fit molecules [NUMBER].pdb (#6.1), [NUMBER].pdb (#6.2), [NUMBER].pdb (#6.3),
[NUMBER].pdb (#6.4), [NUMBER].pdb (#6.5), [NUMBER].pdb (#6.6), [NUMBER].pdb
(#6.7) to map cryosparc_P1110_J21_002_volume_map.mrc (#5) using 40369 atoms  
average map value = 0.2899, steps = 56  
shifted from previous position = 2.78  
rotated from previous position = 4.24 degrees  
atoms outside contour = 24268, contour level = 0.36854  
  
Position of [NUMBER].pdb (#6.1) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.2) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.3) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.4) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.5) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.6) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  
Position of [NUMBER].pdb (#6.7) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99946888 0.00097835 -0.03257311 210.89523817  
0.00118922 0.99778844 0.06645916 184.39349531  
0.03256609 -0.06646260 0.99725733 216.78011661  
Axis -0.89796928 -0.44005584 0.00142457  
Axis point 0.00000000 3303.60269574 -875.40945675  
Rotation angle (degrees) 4.24448033  
Shift along axis -270.21206105  
  

> hide #!7 models

> transparency #5.1 50

> lighting full

> lighting soft

> lighting simple

> view matrix models #6,1,0,0,-212.88,0,1,0,-189.26,0,0,1,-215.93

> view matrix models #6,1,0,0,-210.03,0,1,0,-190.38,0,0,1,-213.48

> fitmap sel inMap #5

Fit molecules [NUMBER].pdb (#6.1), [NUMBER].pdb (#6.2), [NUMBER].pdb (#6.3),
[NUMBER].pdb (#6.4), [NUMBER].pdb (#6.5), [NUMBER].pdb (#6.6), [NUMBER].pdb
(#6.7) to map cryosparc_P1110_J21_002_volume_map.mrc (#5) using 40369 atoms  
average map value = 0.45, steps = 76  
shifted from previous position = 5.82  
rotated from previous position = 5.27 degrees  
atoms outside contour = 14972, contour level = 0.36854  
  
Position of [NUMBER].pdb (#6.1) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.2) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.3) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.4) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.5) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.6) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  
Position of [NUMBER].pdb (#6.7) relative to
cryosparc_P1110_J21_002_volume_map.mrc (#5) coordinates:  
Matrix rotation and translation  
0.99572856 -0.02879525 -0.08772383 238.42789334  
0.04019860 0.99054899 0.13113643 155.83311524  
0.08311865 -0.13410266 0.98747545 230.63649581  
Axis -0.82129143 -0.52899995 0.21363390  
Axis point 0.00000000 2095.24515124 -113.61522234  
Rotation angle (degrees) 9.29262758  
Shift along axis -228.98271987  
  

> color sel bychain

> select subtract #6.1

34602 atoms, 35442 bonds, 6 pseudobonds, 4416 residues, 13 models selected  

> select add #6

40369 atoms, 41349 bonds, 7 pseudobonds, 5152 residues, 15 models selected  

> select subtract #6

Nothing selected  

> hide #!5 models

> select add #5

2 models selected  

> show #!5 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> show #!5 models

> close #1-3

> close #4#4.1-2

> hide #!6 models

> show #!6 models

> select add #5

4 models selected  

> select subtract #5

Nothing selected  

> open /Users/hmed/Downloads/5wth.pdb

5wth.pdb title:  
Cryo-em structure for hepatitis A virus complexed with fab [more info...]  
  
Chain information for 5wth.pdb #1  
---  
Chain | Description  
A | polyprotein  
B | VP2  
C | VP3  
D | fab light chain  
E | fab heavy chain  
  

> mmaker #1 to #6.6

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker [NUMBER].pdb, chain A (#6.6) with 5wth.pdb, chain A (#1), sequence
alignment score = 1274.2  
RMSD between 246 pruned atom pairs is 0.968 angstroms; (across all 260 pairs:
1.145)  
  

> show cartoons

> hide atoms

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.3 models

> hide #!6.4 models

> hide #!6.5 models

> hide #!6.7 models

> save /Users/hmed/Downloads/hepAinitialmodelling.cxs includeMaps true

Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 143, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of NewerVersionQuery class in
ChimeraX-Core bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 901, in save  
session.save(output, version=version, include_maps=include_maps)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'tasks' -> <chimerax.core.tasks.Tasks object at
0x102e12510>: Unable to restore objects of NewerVersionQuery class in
ChimeraX-Core bundle because the class name is not listed in the name to class
table for session restore  
  
ValueError: error processing: 'tasks' -> : Unable to restore objects of
NewerVersionQuery class in ChimeraX-Core bundle because the class name is not
listed in the name to class table for session restore  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 262, in discovery  
self.processed[key] = self.process(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 299, in process  
return copy_state(data, convert=convert)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 219, in copy_state  
return _copy(data)  
^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in _copy  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 204, in <listcomp>  
items = [(_copy(k), _copy(v)) for k, v in data.items()]  
^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/state.py", line 217, in _copy  
return convert(data)  
^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 298, in convert  
return add_obj(obj, parents)  
^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 270, in _add_obj  
uid = _UniqueName.from_obj(self.session, obj)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 143, in from_obj  
raise RuntimeError(  
RuntimeError: Unable to restore objects of NewerVersionQuery class in
ChimeraX-Core bundle because the class name is not listed in the name to class
table for session restore  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save  
saver_info.save(session, path, **provider_kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core_formats/__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 901, in save  
session.save(output, version=version, include_maps=include_maps)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 625, in save  
mgr.discovery(self._state_containers)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
ValueError: error processing: 'tasks' -> <chimerax.core.tasks.Tasks object at
0x102e12510>: Unable to restore objects of NewerVersionQuery class in
ChimeraX-Core bundle because the class name is not listed in the name to class
table for session restore  
  
ValueError: error processing: 'tasks' -> : Unable to restore objects of
NewerVersionQuery class in ChimeraX-Core bundle because the class name is not
listed in the name to class table for session restore  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/session.py", line 266, in discovery  
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,9
      Model Number: MPHF3B/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 8422.141.2
      OS Loader Version: 8422.141.2

Software:

    System Software Overview:

      System Version: macOS 13.6 (22G120)
      Kernel Version: Darwin 22.6.0
      Time since boot: 8 hours, 32 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U2717D:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.0
    Babel: 2.13.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.2
    charset-normalizer: 3.3.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.48.1
    ChimeraX-AtomicLibrary: 10.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.4
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202310070039
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.1
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.12
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.11
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.2
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.32.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.2
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.4
    contourpy: 1.1.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.0
    filelock: 3.9.0
    fonttools: 4.43.1
    funcparserlib: 1.0.1
    glfw: 2.6.2
    grako: 3.16.5
    h5py: 3.9.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.38
    imagecodecs: 2023.7.10
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.3.2
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 10.0.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.11.0
    prompt-toolkit: 3.0.39
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.1
    qtconsole: 5.4.3
    QtPy: 2.4.0
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.3
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.0.6
    wcwidth: 0.2.8
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9