Opened 23 months ago
Closed 23 months ago
#10323 closed defect (fixed)
fitmap search animation moving models does not take a direct route
Reported by: | Owned by: | ||
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Volume Data | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-13.6.1-x86_64-i386-64bit ChimeraX Version: 1.8.dev202311100228 (2023-11-10 02:28:59 UTC) Description Fit search list interpolation often sends the model into orbit far from the destination location even if only a small motion would be required to reach the fit location. Log: UCSF ChimeraX version: 1.8.dev202311100228 (2023-11-10) © 2016-2023 Regents of the University of California. All rights reserved. > open /Users/goddard/ucsf/chimerax/src/bundles/map_fit/test.cxs format > session Opened emdb 12654 as #1, grid size 250,250,250, pixel 1.54, shown at level 2, step 1, values float32 Log from Mon Dec 11 15:12:35 2023Could not find tool "Tabbed Toolbar" UCSF ChimeraX version: 1.8.dev202311100228 (2023-11-10) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 12654 format ccp4 fromDatabase emdb Opened emdb 12654 as #1, grid size 250,250,250, pixel 1.54, shown at level 2, step 1, values float32, fit PDB 7nyu > open 7nyu format mmcif fromDatabase pdb 7nyu title: Respiratory complex I from Escherichia coli - conformation 2 [more info...] Chain information for 7nyu #2 --- Chain | Description | UniProt A | NADH-quinone oxidoreductase subunit A | NUOA_ECOLI 1-147 B | NADH-quinone oxidoreductase subunit B | NUOB_ECOLI 1-220 D | NADH-quinone oxidoreductase subunit C/D | NUOCD_ECOLI 1-596 E | NADH-quinone oxidoreductase subunit E | NUOE_ECOLI 1-166 F | NADH-quinone oxidoreductase subunit F | NUOF_ECOLI 1-445 G | NADH-quinone oxidoreductase subunit G | NUOG_ECOLI 1-908 H | NADH-quinone oxidoreductase subunit H | NUOH_ECOLI 1-325 I | NADH-quinone oxidoreductase subunit I | NUOI_ECOLI 1-180 J | NADH-quinone oxidoreductase subunit J | NUOJ_ECOLI 1-184 K | NADH-quinone oxidoreductase subunit K | NUOK_ECOLI 1-100 L | NADH-quinone oxidoreductase subunit L | A0A1V3W1N5_ECOLX 1-613 M | NADH-quinone oxidoreductase subunit M | NUOM_ECOLI 1-509 N | NADH-quinone oxidoreductase subunit N | NUON_ECOLI 1-485 Non-standard residues in 7nyu #2 --- CA — calcium ion FES — FE2/S2 (inorganic) cluster FMN — flavin mononucleotide (riboflavin monophosphate) SF4 — iron/sulfur cluster > open 3rko format mmcif fromDatabase pdb 3rko title: Crystal structure of the membrane domain of respiratory complex I from E. coli at 3.0 angstrom resolution [more info...] Chain information for 3rko #3 --- Chain | Description | UniProt A E | NADH-QUINONE OXIDOREDUCTASE SUBUNIT A | C6E9R4_ECOBD 1-147 B L | NADH-QUINONE OXIDOREDUCTASE SUBUNIT L | C6E9S4_ECOBD 1-613 C M | NADH-QUINONE OXIDOREDUCTASE SUBUNIT M | C6E9S5_ECOBD 1-509 D N | NADH-QUINONE OXIDOREDUCTASE SUBUNIT N | C6E9S6_ECOBD 1-485 F J | NADH-QUINONE OXIDOREDUCTASE SUBUNIT J | C6E9S2_ECOBD 1-184 G K | NADH-QUINONE OXIDOREDUCTASE SUBUNIT K | C6E9S3_ECOBD 1-100 Non-standard residues in 3rko #3 --- CA7 — 7-cyclohexylheptyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside LFA — eicosane (lipid fragment) 3rko mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > delete ~/L > mmaker #3 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7nyu, chain L (#2) with 3rko, chain L (#3), sequence alignment score = 3003.3 RMSD between 575 pruned atom pairs is 1.029 angstroms; (across all 612 pairs: 1.204) > hide atoms > show cartoons > hide #!1 models > color #2 #17ceebff > color #2 #17ce4cff > delete :547-1000 > fitmap #3 inMap #1 search 100 radius 30 Found 96 unique fits from 100 random placements having fraction of points inside contour >= 0.100 (100 of 100). Average map values and times found: 1.444 (1), 1.24 (1), 1.208 (1), 1.2 (1), 1.179 (1), 1.158 (1), 1.151 (1), 1.148 (1), 1.141 (1), 1.14 (1), 1.13 (3), 1.13 (1), 1.13 (1), 1.125 (1), 1.117 (3), 1.116 (1), 1.116 (1), 1.113 (1), 1.109 (1), 1.103 (1), 1.093 (1), 1.093 (1), 1.092 (1), 1.088 (1), 1.087 (1), 1.086 (1), 1.086 (1), 1.081 (1), 1.081 (1), 1.08 (1), 1.078 (1), 1.077 (1), 1.071 (1), 1.067 (1), 1.065 (1), 1.064 (1), 1.058 (1), 1.057 (1), 1.056 (1), 1.051 (1), 1.047 (1), 1.046 (1), 1.046 (1), 1.046 (1), 1.045 (1), 1.045 (1), 1.044 (1), 1.043 (1), 1.04 (1), 1.039 (1), 1.037 (1), 1.036 (1), 1.035 (1), 1.034 (1), 1.033 (1), 1.031 (1), 1.029 (1), 1.029 (1), 1.027 (1), 1.026 (1), 1.026 (1), 1.025 (1), 1.024 (1), 1.024 (1), 1.022 (1), 1.018 (1), 1.014 (1), 1.01 (1), 1.006 (1), 1.005 (1), 1.003 (1), 1.002 (1), 0.9966 (1), 0.9957 (1), 0.993 (1), 0.9917 (1), 0.9872 (1), 0.9789 (1), 0.9728 (1), 0.9676 (1), 0.9624 (1), 0.9586 (1), 0.9548 (1), 0.9497 (1), 0.9442 (1), 0.9436 (1), 0.9379 (1), 0.9352 (1), 0.9197 (1), 0.918 (1), 0.8678 (1), 0.8646 (1), 0.8621 (1), 0.8414 (1), 0.8242 (1), 0.7459 (1) Best fit found: Fit molecule 3rko (#3) to map emdb 12654 (#1) using 4164 atoms average map value = 1.444, steps = 96 shifted from previous position = 2.75 rotated from previous position = 27.4 degrees atoms outside contour = 2743, contour level = 2 Position of 3rko (#3) relative to emdb 12654 (#1) coordinates: Matrix rotation and translation 0.06497259 -0.16057875 -0.98488222 174.06774843 -0.45505859 0.87360214 -0.17245541 117.10801015 0.88808792 0.45938407 -0.01631256 168.13156167 Axis 0.31615866 -0.93719331 -0.14735127 Axis point 26.51958635 0.00000000 177.08106317 Rotation angle (degrees) 92.22758609 Shift along axis -79.49421665 Found 96 fits. Populating font family aliases took 85 ms. Replace uses of missing font family "Courier" with one that exists to avoid this cost. Traceback (most recent call last): File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/map_fit/search.py", line 411, in mstep return move_step(mt, session) ^^^^^^^^^^^^^^^^^^^^^^ File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/map_fit/search.py", line 427, in move_step c = m.scene_position.inverse() * scene # Center in model coordinates ^^^^^ NameError: name 'scene' is not defined Error processing trigger "new frame": NameError: name 'scene' is not defined File "/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/map_fit/search.py", line 427, in move_step c = m.scene_position.inverse() * scene # Center in model coordinates ^^^^^ See log for complete Python traceback. > save test.cxs ——— End of log from Mon Dec 11 15:12:35 2023 ——— opened ChimeraX session > fitmap #3 inMap #1 search 100 radius 30 Found 92 unique fits from 100 random placements having fraction of points inside contour >= 0.100 (100 of 100). Average map values and times found: 1.444 (5), 1.233 (1), 1.226 (1), 1.203 (1), 1.2 (2), 1.184 (1), 1.183 (1), 1.182 (1), 1.18 (1), 1.174 (1), 1.166 (1), 1.165 (1), 1.16 (1), 1.155 (1), 1.154 (1), 1.142 (1), 1.14 (1), 1.137 (1), 1.133 (2), 1.13 (1), 1.12 (1), 1.113 (1), 1.11 (1), 1.109 (2), 1.108 (1), 1.105 (1), 1.103 (1), 1.099 (1), 1.096 (1), 1.096 (1), 1.091 (1), 1.083 (1), 1.08 (1), 1.078 (1), 1.074 (1), 1.073 (1), 1.068 (1), 1.067 (1), 1.066 (1), 1.059 (1), 1.058 (1), 1.056 (1), 1.054 (2), 1.052 (1), 1.046 (1), 1.045 (1), 1.043 (1), 1.042 (1), 1.042 (1), 1.041 (1), 1.041 (1), 1.039 (1), 1.033 (1), 1.032 (1), 1.032 (1), 1.031 (1), 1.029 (1), 1.027 (1), 1.027 (1), 1.026 (1), 1.024 (1), 1.022 (1), 1.019 (1), 1.019 (1), 1.016 (1), 1.013 (1), 1.01 (1), 1.009 (1), 0.9985 (1), 0.9925 (1), 0.9918 (1), 0.9916 (1), 0.9894 (1), 0.982 (1), 0.9794 (1), 0.9784 (1), 0.9684 (1), 0.9615 (1), 0.9537 (1), 0.9496 (1), 0.9427 (1), 0.9342 (1), 0.9328 (1), 0.9133 (1), 0.9011 (1), 0.8943 (1), 0.8907 (1), 0.8837 (1), 0.882 (1), 0.8666 (1), 0.8575 (1), 0.8545 (1) Best fit found: Fit molecule 3rko (#3) to map emdb 12654 (#1) using 4164 atoms average map value = 1.444, steps = 116 shifted from previous position = 10.3 rotated from previous position = 19.4 degrees atoms outside contour = 2745, contour level = 2 Position of 3rko (#3) relative to emdb 12654 (#1) coordinates: Matrix rotation and translation 0.06504250 -0.16044596 -0.98489924 174.07444595 -0.45533495 0.87347605 -0.17236464 117.10082125 0.88794115 0.45967017 -0.01624360 168.11747219 Axis 0.31625632 -0.93712815 -0.14755597 Axis point 26.53859698 0.00000000 177.07615129 Rotation angle (degrees) 92.22721952 Shift along axis -79.49306874 Found 92 fits. Populating font family aliases took 85 ms. Replace uses of missing font family "Courier" with one that exists to avoid this cost. > view OpenGL version: 4.1 ATI-4.14.1 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.2 Locale: en_US.UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac18,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 4.2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 522.0.0.0.0 OS Loader Version: 577.140.2~15 SMC Version (system): 2.41f2 Software: System Software Overview: System Version: macOS 13.6.1 (22G313) Kernel Version: Darwin 22.6.0 Time since boot: 11 days, 23 hours, 39 minutes Graphics/Displays: Radeon Pro 580: Chipset Model: Radeon Pro 580 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D000AA-931 VBIOS Version: 113-D0001A1X-025 EFI Driver Version: 01.00.931 Metal Support: Metal 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.13.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.12 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.1 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.51 ChimeraX-AtomicLibrary: 12.1.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.5 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202311100228 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.8 ChimeraX-ListInfo: 1.2.1 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.12 ChimeraX-ModelPanel: 1.4 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.14.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.3 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.0 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.44.0 funcparserlib: 1.0.1 glfw: 2.6.2 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.5.0 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.3 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.8 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.7 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 10.0.1 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.0.0 prompt-toolkit: 3.0.40 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.1 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.7 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.5 sphinxcontrib-htmlhelp: 2.0.4 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.6 sphinxcontrib-serializinghtml: 1.1.9 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.3 traitlets: 5.9.0 typing-extensions: 4.8.0 tzdata: 2023.3 urllib3: 2.1.0 wcwidth: 0.2.9 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9
Change History (1)
comment:1 by , 23 months ago
Component: | Unassigned → Volume Data |
---|---|
Platform: | → all |
Project: | → ChimeraX |
Resolution: | → fixed |
Status: | new → closed |
Summary: | ChimeraX bug report submission → fitmap search animation moving models does not take a direct route |
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Fixed in 1.8 daily and 1.7.
The interpolation code was using a center of rotation point in scene coordinates where it required a center point in fit model local coordinates. Fixed the coordinate system.