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Opened 2 years ago
Last modified 2 years ago
#10292 assigned defect
ArtiaX: wrapped C/C++ object of type QComboBox has been deleted
| Reported by: | Owned by: | Utz Ermel | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\Users\lenovo\Desktop\Mito_seg\PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
> format imodmap
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #1, grid size 512,512,300,
pixel 12,12,12, shown at level 1.71, step 2, values float32
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
> artiax add tomo #1
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #2.1.1, grid size
512,512,300, pixel 12,12,12, shown at level 1.71, step 1, values float32
> artiax tomo #2.1.1 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #2.1.1 slice 77
> artiax tomo #2.1.1 slice 78
> artiax tomo #2.1.1 slice 79
> artiax tomo #2.1.1 slice 80
> artiax tomo #2.1.1 slice 81
> artiax tomo #2.1.1 slice 82
> artiax tomo #2.1.1 slice 83
> artiax tomo #2.1.1 slice 84
> artiax tomo #2.1.1 slice 85
> artiax tomo #2.1.1 slice 86
> artiax tomo #2.1.1 slice 87
> artiax tomo #2.1.1 slice 88
> artiax tomo #2.1.1 slice 89
> artiax tomo #2.1.1 slice 90
> artiax tomo #2.1.1 slice 91
> artiax tomo #2.1.1 slice 92
> artiax tomo #2.1.1 slice 93
> artiax tomo #2.1.1 slice 94
> artiax tomo #2.1.1 slice 95
> artiax tomo #2.1.1 slice 96
> artiax tomo #2.1.1 slice 97
> artiax tomo #2.1.1 slice 98
> artiax tomo #2.1.1 slice 99
> artiax tomo #2.1.1 slice 100
> artiax tomo #2.1.1 slice 101
> artiax tomo #2.1.1 slice 102
> artiax tomo #2.1.1 slice 103
> artiax tomo #2.1.1 slice 104
> artiax tomo #2.1.1 slice 105
> artiax tomo #2.1.1 slice 106
> artiax tomo #2.1.1 slice 107
> artiax tomo #2.1.1 slice 108
> artiax tomo #2.1.1 slice 109
> artiax tomo #2.1.1 slice 110
> artiax tomo #2.1.1 slice 111
> artiax tomo #2.1.1 slice 112
> artiax tomo #2.1.1 slice 113
> artiax tomo #2.1.1 slice 114
> artiax tomo #2.1.1 slice 115
> artiax tomo #2.1.1 slice 116
> artiax tomo #2.1.1 slice 117
> artiax tomo #2.1.1 slice 118
> artiax tomo #2.1.1 slice 119
> artiax tomo #2.1.1 slice 120
> artiax tomo #2.1.1 slice 121
> artiax tomo #2.1.1 slice 122
> artiax tomo #2.1.1 slice 123
> artiax tomo #2.1.1 slice 124
> artiax tomo #2.1.1 slice 125
> artiax tomo #2.1.1 slice 126
> artiax tomo #2.1.1 slice 127
> artiax tomo #2.1.1 slice 128
> artiax tomo #2.1.1 slice 129
> artiax tomo #2.1.1 slice 130
> artiax tomo #2.1.1 slice 131
> artiax tomo #2.1.1 slice 132
> artiax tomo #2.1.1 slice 133
> artiax tomo #2.1.1 slice 134
> artiax tomo #2.1.1 slice 135
> artiax tomo #2.1.1 slice 145
> artiax tomo #2.1.1 slice 155
> artiax tomo #2.1.1 slice 165
> artiax tomo #2.1.1 slice 175
> artiax tomo #2.1.1 slice 185
> artiax tomo #2.1.1 slice 195
> artiax tomo #2.1.1 slice 205
> artiax tomo #2.1.1 slice 215
> artiax tomo #2.1.1 slice 205
> artiax tomo #2.1.1 slice 195
> artiax tomo #2.1.1 slice 185
> artiax tomo #2.1.1 slice 175
> artiax tomo #2.1.1 slice 165
> artiax tomo #2.1.1 slice 155
> artiax tomo #2.1.1 slice 145
> artiax tomo #2.1.1 slice 135
> artiax tomo #2.1.1 slice 125
> artiax tomo #2.1.1 slice 115
> artiax tomo #2.1.1 slice 105
> artiax tomo #2.1.1 slice 132
[Repeated 1 time(s)]
> volume #2 planes z,70,135,0.5
> select add #2
7 models selected
> select subtract #2
Nothing selected
> select add #2
7 models selected
> select subtract #2
Nothing selected
> select add #2
7 models selected
> select subtract #2
Nothing selected
> select add #2
7 models selected
> volume #2.1.1 showOutlineBox true imageMode "full region"
> volume #2 planes z,70,135,0.5
> volume #2.1.1 region 0,0,0,511,511,299 step 2
> volume #2.1.1 region 0,0,0,511,511,299 step 2 imageMode "tilted slab"
> tiltedSlabAxis -0.0797,0.0025,0.9968 tiltedSlabOffset 1366 tiltedSlabSpacing
> 12 tiltedSlabPlaneCount 30
> close session
> open C:\Users\lenovo\Desktop\Mito_seg\PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
> format imodmap
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #1, grid size 512,512,300,
pixel 12,12,12, shown at level 1.71, step 2, values float32
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
> artiax add tomo #1
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #2.1.1, grid size
512,512,300, pixel 12,12,12, shown at level 1.71, step 1, values float32
> artiax tomo #2.1.1 sliceDirection 0,0,1
> artiax view xy
> volume #2 tiltedSlab slab z,70,135,0.5
Invalid "tiltedSlab" argument: Expected true or false (or 1 or 0)
> volume #2 tiltedSlab z,70,135,0.5
Invalid "tiltedSlab" argument: Expected true or false (or 1 or 0)
> volume #2 tiltedSlab true
> volume #2 tiltedSlab z,70,135,0.5
Invalid "tiltedSlab" argument: Expected true or false (or 1 or 0)
> volume #2.1.1 region 0,0,148,511,511,148 step 1 imageMode "full region"
> volume #2 planes z,70,135,0.5
[Repeated 2 time(s)]Opened
PDC_12_ts_005_SIRT_bin6_corrected_10a_rescaled_scores_threshold_-5.0.mrc as
#2.1.2, grid size 614,614,270, pixel 10, shown at level 1, step 1, values int8
> artiax tomo #2.1.2 sliceDirection 0,0,1
> artiax view xy
> hide #!2.1.1 models
> volume #2.1.2 style surface
> volume #2.1.2 level 0.9013
> open C:/Users/lenovo/Desktop/Mito_seg/mito_seg_bin6_full.mrc
Opened mito_seg_bin6_full.mrc as #1, grid size 614,614,270, pixel 10, shown at
level 1, step 2, values int8
> volume #1 level 0.9498
> show #!2.1.1 models
> open C:/Users/lenovo/Desktop/Mito_seg/230213_PDC_12_ts_005seg.mrc
Opened 230213_PDC_12_ts_005seg.mrc as #3, grid size 512,512,150, pixel
12,12,12, shown at level 0.00021, step 2, values float32
> volume #3 level 1.336
> hide #!2.1.1 models
> fitmap #1 inMap #3
Fit map mito_seg_bin6_full.mrc in map 230213_PDC_12_ts_005seg.mrc using 136553
points
correlation = 0.516, correlation about mean = 0, overlap = 5.708e+04
steps = 272, shift = 453, angle = 0.0959 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
230213_PDC_12_ts_005seg.mrc (#3) coordinates:
Matrix rotation and translation
0.99999860 -0.00038388 -0.00162982 -6.83280270
0.00038389 0.99999993 0.00000339 -10.30123955
0.00162981 -0.00000402 0.99999867 -457.76306062
Axis -0.00221261 -0.97336139 0.22926558
Axis point 267513.84851217 0.00000000 -4551.31453293
Rotation angle (degrees) 0.09593723
Shift along axis -94.90736585
> show #!2.1.1 models
> ui tool show "Fit in Map"
> artiax tomo #2.1.1 pixelSize 1.5
> artiax view xy
> artiax tomo #2.1.1 pixelSize 1.5
> artiax view xy
> artiax tomo #2.1.1 pixelSize 12.0
> artiax view xy
> artiax tomo #2.1.1 pixelSize 12.0
> artiax view xy
> artiax tomo #2.1.1 pixelSize 12.0
> artiax view xy
> artiax tomo #2.1.1 pixelSize 12.0
> artiax view xy
> artiax tomo #2.1.1 pixelSize 12.0
> artiax view xy
> open C:/Users/lenovo/Desktop/Mito_seg/PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #4, grid size 512,512,300,
pixel 12,12,12, shown at level 1.71, step 2, values float32
> fitmap #4 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 98040 points
correlation = 0.02591, correlation about mean = -0.0137, overlap = 152.7
steps = 384, shift = 82.8, angle = 1.75 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#4) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
0.99968804 0.00090793 -0.02495975 49.03108029
-0.00128522 0.99988510 -0.01510411 58.61280960
0.02494317 0.01513147 0.99957435 421.72969180
Axis 0.51782809 -0.85465973 -0.03756085
Axis point -16795.10931160 0.00000000 3015.48186073
Rotation angle (degrees) 1.67296578
Shift along axis -40.54486207
> fitmap #4 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 98040 points
correlation = 0.02591, correlation about mean = -0.01369, overlap = 152.7
steps = 48, shift = 0.129, angle = 0.0124 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#4) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
0.99969006 0.00086139 -0.02488065 49.09831120
-0.00124238 0.99988216 -0.01530136 58.77399608
0.02486454 0.01532753 0.99957332 421.41191758
Axis 0.52396228 -0.85098081 -0.03598872
Axis point -16839.47971565 -0.00000000 3014.02915315
Rotation angle (degrees) 1.67488828
Shift along axis -39.45595413
> fitmap #4 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 98040 points
correlation = 0.06335, correlation about mean = 0.005827, overlap = 772.6
steps = 2000, shift = 376, angle = 9.17 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#4) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
0.99567999 -0.04088958 -0.08336310 361.11519498
0.05112831 0.99088346 0.12464291 31.44545856
0.07750652 -0.12836667 0.98869345 573.21362208
Axis -0.80672836 -0.51293741 0.29340171
Axis point 0.00000000 4725.06143519 666.44222667
Rotation angle (degrees) 9.02190877
Shift along axis -139.26956375
> fitmap #4 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 98040 points
correlation = 0.2295, correlation about mean = -0.02666, overlap = 1.095e+04
steps = 996, shift = 910, angle = 8.15 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#4) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
0.99738861 -0.07222149 -0.00011940 383.90502628
0.07221689 0.99730355 0.01305181 -196.29611520
-0.00082354 -0.01302635 0.99991481 -433.80967221
Axis -0.17767397 0.00479737 0.98407771
Axis point 2834.27876789 3992.82433140 0.00000000
Rotation angle (degrees) 4.20858859
Shift along axis -496.05406532
> volume #4 style image region 0,0,148,511,511,148 step 1 showOutlineBox true
> volume #4 region 0,0,0,511,511,299 step 2
> volume #4 region 0,0,0,511,511,299 step 2 imageMode "tilted slab"
> tiltedSlabAxis -0.03949,0.1095,0.9932 tiltedSlabOffset 1810
> tiltedSlabSpacing 12 tiltedSlabPlaneCount 30
> volume #4 region 0,0,148,511,511,148 step 1 imageMode "full region"
> volume #4 color #b2b3ff color #ffb3ff color #ffb3ff
> volume #4 color #b2b2ff color #ffb3ff color #ffb3ff
> volume #4 color #b2b2b2 color #ffb3ff color #ffb3ff
> artiax add tomo #1
Opened mito_seg_bin6_full.mrc as #2.1.1, grid size 614,614,270, pixel 10,
shown at level 1, step 1, values int8
> artiax tomo #2.1.1 sliceDirection 0,0,1
> artiax view xy
> volume #2.1.1 style surface
> close #4
> close #2.1.1
> close #3
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #2.1.1, grid size
512,512,300, pixel 12,12,12, shown at level 1.71, step 1, values float32
> artiax tomo #2.1.1 sliceDirection 0,0,1
> artiax view xy
> open C:/Users/lenovo/Desktop/Mito_seg/mito_seg_bin6_full.mrc
Opened mito_seg_bin6_full.mrc as #1, grid size 614,614,270, pixel 10, shown at
level 1, step 2, values int8
> volume #2.1.1 style surface
> fitmap #2.1.1 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 781821 points
correlation = 0.2344, correlation about mean = -0.07181, overlap = 9.565e+04
steps = 524, shift = 486, angle = 1.2 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
> fitmap #2.1.1 inMap #1
Fit map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec in map mito_seg_bin6_full.mrc
using 781821 points
correlation = 0.2344, correlation about mean = -0.07181, overlap = 9.565e+04
steps = 524, shift = 486, angle = 1.2 degrees
Position of PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) relative to
mito_seg_bin6_full.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
> open C:/Users/lenovo/Desktop/Mito_seg/230213_PDC_12_ts_005seg.mrc
Opened 230213_PDC_12_ts_005seg.mrc as #3, grid size 512,512,150, pixel
12,12,12, shown at level 0.00021, step 2, values float32
> fitmap #1 inMap #3
[Repeated 1 time(s)]
> volume #1 level 0.8672
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 392, shift = 253, angle = 4.31 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> volume #2.1.1 style image region 0,0,149,511,511,149 step 1 showOutlineBox
> true imageMode "full region"
> close #3
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0, correlation about mean = 0, overlap = 0
steps = 24, shift = 0, angle = 0 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 -0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0, correlation about mean = 0, overlap = 0
steps = 24, shift = 0, angle = 0 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0, correlation about mean = 0, overlap = 0
steps = 24, shift = 0, angle = 0 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0, correlation about mean = 0, overlap = 0
steps = 24, shift = 0, angle = 0 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0, correlation about mean = 0, overlap = 0
steps = 24, shift = 0, angle = 0 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790044 -0.05095687 0.03997642 -69.37826900
0.04939230 0.99801010 0.03919500 -377.37618471
-0.04189412 -0.03713818 0.99843159 269.06959146
Axis -0.50776641 0.54460083 0.66752019
Axis point 7679.26674476 -1585.06640856 0.00000000
Rotation angle (degrees) 4.31073971
Shift along axis 9.31795789
> volume #2.1.1 region 0,0,0,511,511,299 step 2
> volume #2.1.1 style surface region 0,0,0,511,511,299 step 2
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 48, shift = 0.0709, angle = 0.0055 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790001 -0.05096493 0.03997673 -69.41943102
0.04939632 0.99800613 0.03929085 -377.50347354
-0.04189947 -0.03723364 0.99842781 269.28457224
Axis -0.50867235 0.54424612 0.66711963
Axis point 7683.10070245 -1583.84308675 0.00000000
Rotation angle (degrees) 4.31385313
Shift along axis 9.50197084
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 76, shift = 0.217, angle = 0.0111 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790384 -0.05092765 0.03992870 -69.26271958
0.04936858 0.99801477 0.03910586 -377.17834822
-0.04184100 -0.03705267 0.99843699 268.73843840
Axis -0.50720828 0.54457808 0.66796294
Axis point 7678.21720468 -1584.08031446 -0.00000000
Rotation angle (degrees) 4.30560018
Shift along axis 9.23488209
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9563, correlation about mean = 0, overlap = 1.467e+05
steps = 84, shift = 0.163, angle = 0.00385 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790217 -0.05098532 0.03989684 -69.20491916
0.04942789 0.99801225 0.03909522 -377.41309359
-0.04181082 -0.03704119 0.99843868 268.69214916
Axis -0.50694885 0.54404467 0.66859424
Axis point 7675.56386525 -1579.70445186 0.00000000
Rotation angle (degrees) 4.30655385
Shift along axis 9.39979378
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9563, correlation about mean = 0, overlap = 1.467e+05
steps = 80, shift = 0.0216, angle = 0.000723 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790183 -0.05098282 0.03990855 -69.20670453
0.04942479 0.99801225 0.03909906 -377.40376616
-0.04182260 -0.03704455 0.99843807 268.72229235
Axis -0.50695400 0.54415511 0.66850046
Axis point 7675.41061561 -1580.26266991 0.00000000
Rotation angle (degrees) 4.30691824
Shift along axis 9.35940310
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 64, shift = 0.0761, angle = 0.00428 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790109 -0.05097608 0.03993555 -69.31888349
0.04941417 0.99801008 0.03916790 -377.45471186
-0.04185271 -0.03711231 0.99843429 268.93916573
Axis -0.50756351 0.54421368 0.66799008
Axis point 7678.58191774 -1582.23398051 0.00000000
Rotation angle (degrees) 4.30946853
Shift along axis 9.41641114
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 76, shift = 0.199, angle = 0.00396 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790348 -0.05092827 0.03993699 -69.26257984
0.04936846 0.99801436 0.03911630 -377.19406057
-0.04184982 -0.03706266 0.99843625 268.77414937
Axis -0.50727671 0.54461942 0.66787725
Axis point 7678.33454919 -1584.29121583 0.00000000
Rotation angle (degrees) 4.30617537
Shift along axis 9.21622519
> fitmap #1 inMap #2.1.1
Fit map mito_seg_bin6_full.mrc in map PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
using 136553 points
correlation = 0.9564, correlation about mean = 0, overlap = 1.467e+05
steps = 84, shift = 0.0175, angle = 0.00133 degrees
Position of mito_seg_bin6_full.mrc (#1) relative to
PDC_230213_PDC_12_ts_005_bin8_SIRT.rec (#2.1.1) coordinates:
Matrix rotation and translation
0.99790382 -0.05093330 0.03992187 -69.23803258
0.04937475 0.99801471 0.03909961 -377.20734079
-0.04183408 -0.03704652 0.99843751 268.69858230
Axis -0.50714556 0.54450786 0.66806778
Axis point 7677.80443080 -1583.46255791 0.00000000
Rotation angle (degrees) 4.30543127
Shift along axis 9.23026397
> volume #1 style image region 0,0,134,613,613,134 step 1 showOutlineBox true
> volume #1
> volume #2.1.1 style image region 0,0,148,511,511,148 step 1
> close session
> open C:\Users\lenovo\Desktop\Mito_seg\PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
> format imodmap
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #1, grid size 512,512,300,
pixel 12,12,12, shown at level 1.71, step 2, values float32
> volume #1 style image region 0,0,148,511,511,148 step 1 showOutlineBox true
> volume #1 level 0.4701,0 level 2.185,0.8 level 8.291,1
> volume #1 level -1.002,0.06154 level 2.185,0.8 level 8.291,1
> volume #2 planes z,70,135,0.5
No volumes specified
> volume #1 planes z,70,135,0.5
> open C:/Users/lenovo/Desktop/Mito_seg/mito_seg_bin6_full.mrc
Opened mito_seg_bin6_full.mrc as #2, grid size 614,614,270, pixel 10, shown at
level 1, step 2, values int8
> volume #2 level 0.5817
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,4.6917,0,1,0,188.34,0,0,1,519.37
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.98399,0.17319,-0.042016,-358.76,-0.17147,0.98431,0.041698,729.68,0.048578,-0.033827,0.99825,456.72
> view matrix models
> #2,0.9829,0.18129,-0.032133,-388.19,-0.17942,0.98229,0.053955,746.44,0.041346,-0.047267,0.99803,515.93
> volume #1 planes z,70,135,0.5
[Repeated 1 time(s)]
> select clear
> volume #2 planes z,70,135,0.5
> volume #1 planes z,70,135,0.5
> volume #2 region 0,0,0,613,613,269 step 2
> volume #2 style mesh region 0,0,0,613,613,269 step 2
> volume #2 style surface
> ui mousemode right "translate selected models"
> select subtract #2
Nothing selected
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.9829,0.18129,-0.032133,-451.5,-0.17942,0.98229,0.053955,647.42,0.041346,-0.047267,0.99803,534.24
> view matrix models
> #2,0.9829,0.18129,-0.032133,-494.24,-0.17942,0.98229,0.053955,555.15,0.041346,-0.047267,0.99803,541.82
> view matrix models
> #2,0.9829,0.18129,-0.032133,-320.68,-0.17942,0.98229,0.053955,797.92,0.041346,-0.047267,0.99803,555.41
> view matrix models
> #2,0.9829,0.18129,-0.032133,-445.49,-0.17942,0.98229,0.053955,746.84,0.041346,-0.047267,0.99803,570.06
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.99694,0.072965,0.028073,-269.66,-0.077334,0.97304,0.21729,259.71,-0.011461,-0.2188,0.9757,1221.9
> view matrix models
> #2,0.99798,0.063511,0.0013076,-217.22,-0.063242,0.99141,0.11451,282.88,0.0059765,-0.11436,0.99342,867.28
> select ~sel
3 models selected
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.9984,0.014967,0.054597,-129.42,-0.012529,0.99892,-0.044718,114.17,-0.055207,0.043962,0.99751,38.517
> undo
[Repeated 1 time(s)]
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.99892,0.0036777,-0.046369,-6.1087,0.000285,0.99637,0.085165,100.44,0.046514,-0.085086,0.99529,657.67
> close session
> open C:\Users\lenovo\Desktop\Mito_seg\PDC_230213_PDC_12_ts_005_bin8_SIRT.rec
> format imodmap
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #1, grid size 512,512,300,
pixel 12,12,12, shown at level 1.71, step 2, values float32
> artiax start
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
> artiax add tomo #1
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "remove models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Opened PDC_230213_PDC_12_ts_005_bin8_SIRT.rec as #2.1.1, grid size
512,512,300, pixel 12,12,12, shown at level 1.71, step 1, values float32
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
> artiax tomo #2.1.1 sliceDirection 0,0,1
> artiax view xy
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
> open C:/Users/lenovo/Desktop/Mito_seg/mito_seg_bin6_full.mrc
Opened mito_seg_bin6_full.mrc as #1, grid size 614,614,270, pixel 10, shown at
level 1, step 2, values int8
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 60, in
_update_models
self._populate()
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
Error processing trigger "add models":
RuntimeError: wrapped C/C++ object of type QComboBox has been deleted
File "C:\Users\lenovo\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\chimerax\artiax\widgets\ModelChooserWidget.py", line 63, in _populate
self.combo.clear()
See log for complete Python traceback.
> volume #2.1.1 region 0,0,148,511,511,148 step 1 showOutlineBox true
> imageMode "full region"
> volume #1 level 0.9534
> volume #1 level 0.7667
> select add #1
2 models selected
> volume #1 region 0,0,0,613,613,269
[Repeated 2 time(s)]
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,26.425,0,1,0,290.71,0,0,1,764.4
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.98571,0.039992,0.16364,-221.31,-0.032772,0.99838,-0.046588,452.7,-0.16523,0.04056,0.98542,1199.8
> view matrix models
> #1,0.99971,0.024009,-0.0032798,-33.002,-0.02402,0.99971,-0.0035625,372.18,0.0031933,0.0036402,0.99999,744.51
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.9989,0.028476,-0.037381,-3.4661,-0.026976,0.99883,0.040037,334.23,0.038478,-0.038985,0.9985,747.46
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99803,0.016507,-0.060447,57.53,-0.010765,0.9955,0.094107,229.77,0.061729,-0.093271,0.99373,823.67
> select clear
> ui mousemode right "rotate selected models"
> select subtract #1
Nothing selected
> select add #1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99854,0.01445,-0.052,51.772,-0.0015634,0.97083,0.23976,100.25,0.053948,-0.23933,0.96944,1266.2
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.93669,0.34745,-0.043451,-649.78,-0.33472,0.92492,0.18026,1353.5,0.10282,-0.1543,0.98266,868.16
> view matrix models
> #1,0.9514,0.30752,-0.01661,-620.68,-0.30027,0.93824,0.17188,1217.5,0.068442,-0.15854,0.98498,986.49
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99754,-0.024756,-0.065525,175.06,0.033303,0.99059,0.13276,58.254,0.061622,-0.13462,0.98898,939.81
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99997,0.0011024,0.0073319,15.211,-0.0023456,0.98513,0.1718,142.05,-0.0070335,-0.17181,0.98511,1262.5
> view matrix models
> #1,0.9992,0.036801,0.015885,-87.378,-0.03824,0.99399,0.10262,311.77,-0.012013,-0.10314,0.99459,1084.3
> select clear
> ui mousemode right "translate selected models"
> select subtract #1
Nothing selected
> select add #1
2 models selected
> view matrix models
> #1,0.9992,0.036801,0.015885,-110.4,-0.03824,0.99399,0.10262,319.26,-0.012013,-0.10314,0.99459,961.39
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.9992,0.036801,0.015885,-94.66,-0.03824,0.99399,0.10262,60.782,-0.012013,-0.10314,0.99459,966.93
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.9992,0.036801,0.015885,-105.37,-0.03824,0.99399,0.10262,78.04,-0.012013,-0.10314,0.99459,669.5
> view matrix models
> #1,0.9992,0.036801,0.015885,-99.445,-0.03824,0.99399,0.10262,95.415,-0.012013,-0.10314,0.99459,755.15
> view matrix models
> #1,0.9992,0.036801,0.015885,-95.654,-0.03824,0.99399,0.10262,116.92,-0.012013,-0.10314,0.99459,715.02
> select clear
> volume #1 planes z,70,135,0.5
> volume #1 region 0,0,0,613,613,269 step 2
> volume #1 style mesh region 0,0,0,613,613,269 step 2
> volume #1 style surface
> volume #2 planes z,70,135,0.5
[Repeated 2 time(s)]
> select add #1
2 models selected
> view matrix models
> #1,0.9992,0.036801,0.015885,-98.683,-0.03824,0.99399,0.10262,120.75,-0.012013,-0.10314,0.99459,815.88
> select subtract #1
Nothing selected
> volume #1 surfaceSmoothing true
> volume #1 surfaceSmoothing true 1
Expected a keyword
> lighting soft
> hide #!1 models
OpenGL version: 3.3.0 - Build 27.20.100.8729
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel
Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows
Manufacturer: LENOVO
Model: 81TC
OS: Microsoft Windows 10 教育版 (Build 19045)
Memory: 16,966,471,680
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-10710U CPU @ 1.10GHz
OSLanguage: zh-CN
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.3
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
comtypes: 1.1.14
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
geomdl: 5.3.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
pandas: 2.1.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pywin32: 305
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
starfile: 0.5.1
superqt: 0.6.1
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
WMI: 1.5.1
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Tool Shed |
|---|---|
| Platform: | → all |
| Project: | → ChimeraX |
comment:2 by , 2 years ago
| Component: | Tool Shed → Third Party |
|---|---|
| Owner: | set to |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ArtiaX: wrapped C/C++ object of type QComboBox has been deleted |
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