Opened 2 years ago

Closed 2 years ago

Last modified 2 years ago

#10337 closed defect (fixed)

Flatpak movie generation fails

Reported by: david.chalmers@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.14.21-150500.55.36-default-x86_64-with-glibc2.35
ChimeraX Version: 1.7.dev202312072052 (2023-12-07 20:52:49 UTC)
Description
I have downloaded and installed the latest flatpak chimerax version.

Unfortunately, movie generation still fails.

David

Log:
UCSF ChimeraX version: 1.7.dev202308212127 (2023-12-07)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /vcp1/people/david/Pdb/1EK6.pdb format pdb

1EK6.pdb title:  
Structure of human udp-galactose 4-epimerase complexed with nadh and udp-
glucose [more info...]  
  
Chain information for 1EK6.pdb #1  
---  
Chain | Description | UniProt  
A B | udp-galactose 4-epimerase | GALE_HUMAN 1-348  
  
Non-standard residues in 1EK6.pdb #1  
---  
MG — magnesium ion  
NAI — 1,4-dihydronicotinamide adenine dinucleotide (NADH)  
TMA — tetramethylammonium ion  
UPG — uridine-5'-diphosphate-glucose (uridine-5'-monophosphate
glucopyranosyl-monophosphateester)  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /vcp1/people/david/Desktop/movie1.mp4

/usr/bin/ffmpeg -r 25 -i /tmp/chimovie_zxr5-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 20 /vcp1/people/david/Desktop/movie1.mp4  
stdout:  
  
stderr:  
ffmpeg version 5.0.3 Copyright (c) 2000-2022 the FFmpeg developers  
built with gcc 12.2.0 (GCC)  
configuration: --prefix=/usr --libdir=/usr/lib/x86_64-linux-gnu
--optflags='-O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS
-fexceptions -fstack-protector-strong -grecord-gcc-switches -fasynchronous-
unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer
' --extra-ldflags='-Wl,-z,relro,-z,now -Wl,--as-needed ' --disable-stripping
--disable-doc --disable-static --enable-shared --disable-everything --enable-
ffplay --enable-ffprobe --enable-gnutls --enable-libaom --enable-libdav1d
--enable-libfdk-aac --enable-libmp3lame --enable-libfontconfig --enable-
libfreetype --enable-libopus --enable-libpulse --enable-libspeex --enable-
libtheora --enable-libvorbis --enable-libvpx --enable-libwebp --enable-openal
--enable-opengl --enable-sdl2 --enable-vulkan --enable-zlib --enable-libv4l2
--enable-libxcb --enable-vdpau --enable-vaapi --enable-pthreads --enable-
encoder='ac3,alac,flac,libfdk_aac,g723_1,mp2,libmp3lame,libopus,libspeex,pcm_alaw,pcm_mulaw,pcm_f32le,pcm_s16be,pcm_s24be,pcm_s16le,pcm_s24le,pcm_s32le,pcm_u8,tta,libvorbis,wavpack,'
--enable-
encoder='ass,ffv1,libaom_av1,libvpx_vp8,libvpx_vp9,mjpeg_vaapi,rawvideo,theora,vp8_vaapi,libopenh264'
--enable-
decoder='adpcm_g722,alac,flac,g723_1,g729,libfdk_aac,libopus,libspeex,mp2,mp3,m4a,pcm_alaw,pcm_mulaw,pcm_f16le,pcm_f24le,pcm_f32be,pcm_f32le,pcm_f64be,pcm_f64le,pcm_s16be,pcm_s16be_planar,pcm_s24be,pcm_s16le,pcm_s16le_planar,pcm_s24le,pcm_s24le_planar,pcm_s32le,pcm_s32le_planar,pcm_s64be,pcm_s64le,pcm_s8,pcm_s8_planar,pcm_u8,pcm_u24be,pcm_u24le,pcm_u32be,pcm_u32le,tta,vorbis,wavpack,'
--enable-
decoder='ass,ffv1,mjpeg,mjpegb,libaom_av1,libdav1d,libvpx_vp8,libvpx_vp9,rawvideo,theora,vp8,vp9,libopenh264'
--enable-encoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
decoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
hwaccel='vp8_vaapi,mjpeg_vaapi,' --enable-
parser='aac,ac3,flac,mjpeg,mpegaudio,mpeg4video,opus,vp3,vp8,vp9,vorbis,'
--enable-
muxer='ac3,ass,flac,g722,gif,matroska,mp3,mpegvideo,rtp,ogg,opus,pcm_s16be,pcm_s16le,wav,webm,'
--enable-
demuxer='aac,ac3,ass,flac,g722,gif,image_jpeg_pipe,image_png_pipe,image_webp_pipe,matroska,mjpeg,mov,mp3,mpegvideo,ogg,pcm_mulaw,pcm_alaw,pcm_s16be,pcm_s16le,rtp,wav,'
--enable-
filter='atempo,crop,scale,overlay,amix,amerge,aresample,format,aformat,fps,transpose,pad,'
--enable-indev='v4l2,xcbgrab,' --enable-
protocol='crypto,file,pipe,rtp,srtp,rtsp,tcp,udp,unix,' --arch=x86_64
--enable-libopenh264  
libavutil 57. 17.100 / 57. 17.100  
libavcodec 59. 18.100 / 59. 18.100  
libavformat 59. 16.100 / 59. 16.100  
libavdevice 59. 4.100 / 59. 4.100  
libavfilter 8. 24.100 / 8. 24.100  
libswscale 6. 4.100 / 6. 4.100  
libswresample 4. 3.100 / 4. 3.100  
/tmp/chimovie_zxr5-%05d.ppm: No such file or directory  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 5.0.3 Copyright (c) 2000-2022 the FFmpeg developers  
built with gcc 12.2.0 (GCC)  
configuration: --prefix=/usr --libdir=/usr/lib/x86_64-linux-gnu
--optflags='-O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS
-fexceptions -fstack-protector-strong -grecord-gcc-switches -fasynchronous-
unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer
' --extra-ldflags='-Wl,-z,relro,-z,now -Wl,--as-needed ' --disable-stripping
--disable-doc --disable-static --enable-shared --disable-everything --enable-
ffplay --enable-ffprobe --enable-gnutls --enable-libaom --enable-libdav1d
--enable-libfdk-aac --enable-libmp3lame --enable-libfontconfig --enable-
libfreetype --enable-libopus --enable-libpulse --enable-libspeex --enable-
libtheora --enable-libvorbis --enable-libvpx --enable-libwebp --enable-openal
--enable-opengl --enable-sdl2 --enable-vulkan --enable-zlib --enable-libv4l2
--enable-libxcb --enable-vdpau --enable-vaapi --enable-pthreads --enable-
encoder='ac3,alac,flac,libfdk_aac,g723_1,mp2,libmp3lame,libopus,libspeex,pcm_alaw,pcm_mulaw,pcm_f32le,pcm_s16be,pcm_s24be,pcm_s16le,pcm_s24le,pcm_s32le,pcm_u8,tta,libvorbis,wavpack,'
--enable-
encoder='ass,ffv1,libaom_av1,libvpx_vp8,libvpx_vp9,mjpeg_vaapi,rawvideo,theora,vp8_vaapi,libopenh264'
--enable-
decoder='adpcm_g722,alac,flac,g723_1,g729,libfdk_aac,libopus,libspeex,mp2,mp3,m4a,pcm_alaw,pcm_mulaw,pcm_f16le,pcm_f24le,pcm_f32be,pcm_f32le,pcm_f64be,pcm_f64le,pcm_s16be,pcm_s16be_planar,pcm_s24be,pcm_s16le,pcm_s16le_planar,pcm_s24le,pcm_s24le_planar,pcm_s32le,pcm_s32le_planar,pcm_s64be,pcm_s64le,pcm_s8,pcm_s8_planar,pcm_u8,pcm_u24be,pcm_u24le,pcm_u32be,pcm_u32le,tta,vorbis,wavpack,'
--enable-
decoder='ass,ffv1,mjpeg,mjpegb,libaom_av1,libdav1d,libvpx_vp8,libvpx_vp9,rawvideo,theora,vp8,vp9,libopenh264'
--enable-encoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
decoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
hwaccel='vp8_vaapi,mjpeg_vaapi,' --enable-
parser='aac,ac3,flac,mjpeg,mpegaudio,mpeg4video,opus,vp3,vp8,vp9,vorbis,'
--enable-
muxer='ac3,ass,flac,g722,gif,matroska,mp3,mpegvideo,rtp,ogg,opus,pcm_s16be,pcm_s16le,wav,webm,'
--enable-
demuxer='aac,ac3,ass,flac,g722,gif,image_jpeg_pipe,image_png_pipe,image_webp_pipe,matroska,mjpeg,mov,mp3,mpegvideo,ogg,pcm_mulaw,pcm_alaw,pcm_s16be,pcm_s16le,rtp,wav,'
--enable-
filter='atempo,crop,scale,overlay,amix,amerge,aresample,format,aformat,fps,transpose,pad,'
--enable-indev='v4l2,xcbgrab,' --enable-
protocol='crypto,file,pipe,rtp,srtp,rtsp,tcp,udp,unix,' --arch=x86_64
--enable-libopenh264  
libavutil 57. 17.100 / 57. 17.100  
libavcodec 59. 18.100 / 59. 18.100  
libavformat 59. 16.100 / 59. 16.100  
libavdevice 59. 4.100 / 59. 4.100  
libavfilter 8. 24.100 / 8. 24.100  
libswscale 6. 4.100 / 6. 4.100  
libswresample 4. 3.100 / 4. 3.100  
/tmp/chimovie_zxr5-%05d.ppm: No such file or directory  
  
\-----------------------------  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /vcp1/people/david/Desktop/movie1.mp4

/usr/bin/ffmpeg -r 25 -i /tmp/chimovie_zxr5-%05d.ppm -vf
crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt
yuv420p -crf 20 /vcp1/people/david/Desktop/movie1.mp4  
stdout:  
  
stderr:  
ffmpeg version 5.0.3 Copyright (c) 2000-2022 the FFmpeg developers  
built with gcc 12.2.0 (GCC)  
configuration: --prefix=/usr --libdir=/usr/lib/x86_64-linux-gnu
--optflags='-O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS
-fexceptions -fstack-protector-strong -grecord-gcc-switches -fasynchronous-
unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer
' --extra-ldflags='-Wl,-z,relro,-z,now -Wl,--as-needed ' --disable-stripping
--disable-doc --disable-static --enable-shared --disable-everything --enable-
ffplay --enable-ffprobe --enable-gnutls --enable-libaom --enable-libdav1d
--enable-libfdk-aac --enable-libmp3lame --enable-libfontconfig --enable-
libfreetype --enable-libopus --enable-libpulse --enable-libspeex --enable-
libtheora --enable-libvorbis --enable-libvpx --enable-libwebp --enable-openal
--enable-opengl --enable-sdl2 --enable-vulkan --enable-zlib --enable-libv4l2
--enable-libxcb --enable-vdpau --enable-vaapi --enable-pthreads --enable-
encoder='ac3,alac,flac,libfdk_aac,g723_1,mp2,libmp3lame,libopus,libspeex,pcm_alaw,pcm_mulaw,pcm_f32le,pcm_s16be,pcm_s24be,pcm_s16le,pcm_s24le,pcm_s32le,pcm_u8,tta,libvorbis,wavpack,'
--enable-
encoder='ass,ffv1,libaom_av1,libvpx_vp8,libvpx_vp9,mjpeg_vaapi,rawvideo,theora,vp8_vaapi,libopenh264'
--enable-
decoder='adpcm_g722,alac,flac,g723_1,g729,libfdk_aac,libopus,libspeex,mp2,mp3,m4a,pcm_alaw,pcm_mulaw,pcm_f16le,pcm_f24le,pcm_f32be,pcm_f32le,pcm_f64be,pcm_f64le,pcm_s16be,pcm_s16be_planar,pcm_s24be,pcm_s16le,pcm_s16le_planar,pcm_s24le,pcm_s24le_planar,pcm_s32le,pcm_s32le_planar,pcm_s64be,pcm_s64le,pcm_s8,pcm_s8_planar,pcm_u8,pcm_u24be,pcm_u24le,pcm_u32be,pcm_u32le,tta,vorbis,wavpack,'
--enable-
decoder='ass,ffv1,mjpeg,mjpegb,libaom_av1,libdav1d,libvpx_vp8,libvpx_vp9,rawvideo,theora,vp8,vp9,libopenh264'
--enable-encoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
decoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
hwaccel='vp8_vaapi,mjpeg_vaapi,' --enable-
parser='aac,ac3,flac,mjpeg,mpegaudio,mpeg4video,opus,vp3,vp8,vp9,vorbis,'
--enable-
muxer='ac3,ass,flac,g722,gif,matroska,mp3,mpegvideo,rtp,ogg,opus,pcm_s16be,pcm_s16le,wav,webm,'
--enable-
demuxer='aac,ac3,ass,flac,g722,gif,image_jpeg_pipe,image_png_pipe,image_webp_pipe,matroska,mjpeg,mov,mp3,mpegvideo,ogg,pcm_mulaw,pcm_alaw,pcm_s16be,pcm_s16le,rtp,wav,'
--enable-
filter='atempo,crop,scale,overlay,amix,amerge,aresample,format,aformat,fps,transpose,pad,'
--enable-indev='v4l2,xcbgrab,' --enable-
protocol='crypto,file,pipe,rtp,srtp,rtsp,tcp,udp,unix,' --arch=x86_64
--enable-libopenh264  
libavutil 57. 17.100 / 57. 17.100  
libavcodec 59. 18.100 / 59. 18.100  
libavformat 59. 16.100 / 59. 16.100  
libavdevice 59. 4.100 / 59. 4.100  
libavfilter 8. 24.100 / 8. 24.100  
libswscale 6. 4.100 / 6. 4.100  
libswresample 4. 3.100 / 4. 3.100  
/tmp/chimovie_zxr5-%05d.ppm: No such file or directory  
  
An error occurred during encoding. See Reply Log for details.  
  
Error during MPEG encoding:  
\-----------------------------  
Exit value: 1  
Error message:  
stdout:  
  
stderr:  
ffmpeg version 5.0.3 Copyright (c) 2000-2022 the FFmpeg developers  
built with gcc 12.2.0 (GCC)  
configuration: --prefix=/usr --libdir=/usr/lib/x86_64-linux-gnu
--optflags='-O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS
-fexceptions -fstack-protector-strong -grecord-gcc-switches -fasynchronous-
unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer
' --extra-ldflags='-Wl,-z,relro,-z,now -Wl,--as-needed ' --disable-stripping
--disable-doc --disable-static --enable-shared --disable-everything --enable-
ffplay --enable-ffprobe --enable-gnutls --enable-libaom --enable-libdav1d
--enable-libfdk-aac --enable-libmp3lame --enable-libfontconfig --enable-
libfreetype --enable-libopus --enable-libpulse --enable-libspeex --enable-
libtheora --enable-libvorbis --enable-libvpx --enable-libwebp --enable-openal
--enable-opengl --enable-sdl2 --enable-vulkan --enable-zlib --enable-libv4l2
--enable-libxcb --enable-vdpau --enable-vaapi --enable-pthreads --enable-
encoder='ac3,alac,flac,libfdk_aac,g723_1,mp2,libmp3lame,libopus,libspeex,pcm_alaw,pcm_mulaw,pcm_f32le,pcm_s16be,pcm_s24be,pcm_s16le,pcm_s24le,pcm_s32le,pcm_u8,tta,libvorbis,wavpack,'
--enable-
encoder='ass,ffv1,libaom_av1,libvpx_vp8,libvpx_vp9,mjpeg_vaapi,rawvideo,theora,vp8_vaapi,libopenh264'
--enable-
decoder='adpcm_g722,alac,flac,g723_1,g729,libfdk_aac,libopus,libspeex,mp2,mp3,m4a,pcm_alaw,pcm_mulaw,pcm_f16le,pcm_f24le,pcm_f32be,pcm_f32le,pcm_f64be,pcm_f64le,pcm_s16be,pcm_s16be_planar,pcm_s24be,pcm_s16le,pcm_s16le_planar,pcm_s24le,pcm_s24le_planar,pcm_s32le,pcm_s32le_planar,pcm_s64be,pcm_s64le,pcm_s8,pcm_s8_planar,pcm_u8,pcm_u24be,pcm_u24le,pcm_u32be,pcm_u32le,tta,vorbis,wavpack,'
--enable-
decoder='ass,ffv1,mjpeg,mjpegb,libaom_av1,libdav1d,libvpx_vp8,libvpx_vp9,rawvideo,theora,vp8,vp9,libopenh264'
--enable-encoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
decoder='bmp,gif,jpegls,png,tiff,webp,' --enable-
hwaccel='vp8_vaapi,mjpeg_vaapi,' --enable-
parser='aac,ac3,flac,mjpeg,mpegaudio,mpeg4video,opus,vp3,vp8,vp9,vorbis,'
--enable-
muxer='ac3,ass,flac,g722,gif,matroska,mp3,mpegvideo,rtp,ogg,opus,pcm_s16be,pcm_s16le,wav,webm,'
--enable-
demuxer='aac,ac3,ass,flac,g722,gif,image_jpeg_pipe,image_png_pipe,image_webp_pipe,matroska,mjpeg,mov,mp3,mpegvideo,ogg,pcm_mulaw,pcm_alaw,pcm_s16be,pcm_s16le,rtp,wav,'
--enable-
filter='atempo,crop,scale,overlay,amix,amerge,aresample,format,aformat,fps,transpose,pad,'
--enable-indev='v4l2,xcbgrab,' --enable-
protocol='crypto,file,pipe,rtp,srtp,rtsp,tcp,udp,unix,' --arch=x86_64
--enable-libopenh264  
libavutil 57. 17.100 / 57. 17.100  
libavcodec 59. 18.100 / 59. 18.100  
libavformat 59. 16.100 / 59. 16.100  
libavdevice 59. 4.100 / 59. 4.100  
libavfilter 8. 24.100 / 8. 24.100  
libswscale 6. 4.100 / 6. 4.100  
libswresample 4. 3.100 / 4. 3.100  
/tmp/chimovie_zxr5-%05d.ppm: No such file or directory  
  
\-----------------------------  
  




OpenGL version: 3.3.0 NVIDIA 520.61.05
OpenGL renderer: NVIDIA GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=/usr/share/xsessions/plasma5
XDG_SESSION_DESKTOP=KDE
XDG_CURRENT_DESKTOP=KDE
DISPLAY=:0
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7B09
OS: Freedesktop SDK 22.08 Flatpak runtime
Architecture: 64bit ELF
Virtual Machine: detection failed
CPU: 32 AMD Ryzen Threadripper 1950X 16-Core Processor
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            31Gi       1.7Gi        25Gi       615Mi       4.2Gi        28Gi
	Swap:          2.0Gi          0B       2.0Gi

Graphics:
	0a:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104 [GeForce GTX 1080] [10de:1b80] (rev a1)	
	Subsystem: Micro-Star International Co., Ltd. [MSI] Device [1462:3362]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202312072052
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.46.0
    funcparserlib: 2.0.0a0
    glfw: 2.6.3
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.0
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.41
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.12
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

Change History (5)

comment:1 by Eric Pettersen, 2 years ago

Cc: Tom Goddard added
Component: Unassigned → Input/Output
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Flatpak movie generation fails

comment:2 by Greg Couch, 2 years ago

Sorry about that. Will look into it later today.

comment:3 by Greg Couch, 2 years ago

Resolution: → fixed
Status: assigned → closed

Fixed. Missed copying the needed patch from the development branch to the release branch.

comment:4 by david.chalmers@…, 2 years ago 

It works now - thanks very much.

Cheers

David


________________________________________________________________________

  David Chalmers PhD BSc(Hons)
  Senior Lecturer

  Monash University
  Medicinal Chemistry. Monash Institute of Pharmaceutical Sciences (MIPS)
  Faculty of Pharmacy and Pharmaceutical Sciences

  Room 119. Level 1, Manning Building, Parkville Campus
  381 Royal Parade, Parkville, VIC 3052. Australia

  T:  +61 3 9903 9110
  E:  david.chalmers@monash.edu
  Twitter:  @davidkchalmers

comment:5 by Greg Couch, 2 years ago

Excellent news. Thank you for trying it.

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