No space left on device saving command history

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.7rc202312120032 (2023-12-12 00:32:40 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7rc202312120032 (2023-12-12)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\pop\Downloads\E.pdb format pdb

OSError: [Errno 28] No space left on device  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\triggerset.py", line
149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 351,
in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 456,
in add  
self._history.enqueue((item, typed))  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 182,
in enqueue  
self.save()  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 212,
in save  
self._history.save(self._queue)  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 119,
in save  
with SaveTextFile(self._filename) as f:  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device  
  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
  
See log for complete Python traceback.  
  
Summary of feedback from opening C:\Users\pop\Downloads\E.pdb  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK File generated by Swiss-PdbViewer 3.70b0  
  
Ignored bad PDB record found on line 3  
REMARK http://www.expasy.org/spdbv/  
  
Ignored bad PDB record found on line 1877  
SPDBVT 1.0000000000 0.0000000000 0.0000000000  
  
Ignored bad PDB record found on line 1878  
SPDBVT 0.0000000000 1.0000000000 0.0000000000  
  
Ignored bad PDB record found on line 1879  
SPDBVT 0.0000000000 0.0000000000 1.0000000000  
  
85 messages similar to the above omitted  
  
Chain information for E.pdb #1  
---  
Chain | Description  
A | No description available  
  

> hide atoms

OSError: [Errno 28] No space left on device  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\triggerset.py", line
149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 351,
in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 456,
in add  
self._history.enqueue((item, typed))  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 182,
in enqueue  
self.save()  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 212,
in save  
self._history.save(self._queue)  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 119,
in save  
with SaveTextFile(self._filename) as f:  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device  
  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
  
See log for complete Python traceback.  
  

> rainbow

OSError: [Errno 28] No space left on device  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\triggerset.py", line
149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 351,
in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 456,
in add  
self._history.enqueue((item, typed))  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 182,
in enqueue  
self.save()  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 212,
in save  
self._history.save(self._queue)  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 119,
in save  
with SaveTextFile(self._filename) as f:  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device  
  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
  
See log for complete Python traceback.  
  

> hbonds reveal true

OSError: [Errno 28] No space left on device  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\triggerset.py", line
149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 351,
in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\cmd_line\tool.py", line 456,
in add  
self._history.enqueue((item, typed))  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 182,
in enqueue  
self.save()  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 212,
in save  
self._history.save(self._queue)  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\history.py", line 119,
in save  
with SaveTextFile(self._filename) as f:  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
OSError: [Errno 28] No space left on device  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device  
  
File "D:\ChimeraX\bin\Lib\site-packages\chimerax\core\safesave.py", line 96,
in __exit__  
self._f.close()  
  
See log for complete Python traceback.  
  
249 hydrogen bonds found  




OpenGL version: 3.3.0 - Build 31.0.101.2112
OpenGL renderer: Intel(R) HD Graphics 505
OpenGL vendor: Intel

Python: 3.11.2
Locale: fr_FR.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Acer
Model: Switch SW312-31
OS: Microsoft Windows 10 Famille Langue unique (Build 19045)
Memory: 4,127,420,416
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Pentium(R) CPU N4200 @ 1.10GHz
OSLanguage: fr-FR

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7rc202312120032
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    comtypes: 1.1.14
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
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    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.46.0
    funcparserlib: 2.0.0a0
    glfw: 2.6.3
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
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    urllib3: 2.1.0
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    widgetsnbextension: 4.0.9
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