![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Sep 23, 2023:
Sep 22, 2023:
- 5:02 PM Ticket #9831 (traceback when opening session without combining existing combined session) created by
- […]
- 4:55 PM ChangeLog edited by
- (diff)
- 4:53 PM ChangeLog edited by
- (diff)
- 9:45 AM Ticket #9830 (Crash showing open dialog) created by
- […]
- 6:13 AM Ticket #9829 (XMAS: crash in ~QGridLayout()) created by
- […]
- 4:58 AM Ticket #9828 (Port RR Distance Maps) created by
- […]
- 4:13 AM Ticket #9827 (Crash in graphics driver, Apple M1, macOS 13.5.2, huge map) created by
- […]
Sep 21, 2023:
- 8:33 PM Ticket #9826 (Crash recording movie) created by
- […]
- 5:38 PM ChangeLog edited by
- (diff)
- 5:36 PM ChangeLog edited by
- (diff)
- 5:35 PM ChangeLog edited by
- (diff)
- 5:35 PM ChangeLog edited by
- (diff)
- 5:31 PM Ticket #9258 (Combine sessions) closed by
- fixed: In tomorrow's daily build you will be able to combine a session file …
- 4:54 PM Ticket #9825 (Quest VR is not smooth) created by
- […]
- 3:42 PM Ticket #9823 (Mac scrollbar behavior) closed by
- fixed: The startup-commands widget sets its initial width/height via a …
- 3:03 PM Ticket #9824 (Crash in Residues.secondary_structure_ids) created by
- […]
- 2:43 PM Ticket #9823 (Mac scrollbar behavior) reopened by
- I still don't know that there's anything I can do about this (probably …
- 2:19 PM Ticket #9823 (Mac scrollbar behavior) closed by
- limitation
- 2:19 PM Ticket #9823 (Mac scrollbar behavior) reopened by
- 2:05 PM Ticket #9823 (Mac scrollbar behavior) closed by
- not a bug: Hi Oli, Pretty sure this is a Mac "feature". The startup-commands …
- 1:27 PM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) closed by
- can't reproduce: Hi Shallee, Thanks for reporting this problem. I just tried this and …
- 1:23 PM Ticket #9821 (Crash in chain_trace_atoms) closed by
- can't reproduce: Performing the same "sym" command on the regular 6L2T entry and asking …
- 1:14 PM Ticket #9820 (MemoryError opening mmCIF) closed by
- duplicate
- 1:08 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 12:49 PM 2023-9-21 edited by
- (diff)
- 11:58 AM Ticket #9823 (Mac scrollbar behavior) created by
- […]
- 10:30 AM Ticket #9459 (Read DICOM files that don't have .dcm (or any) extension) closed by
- fixed: This should be working as of …
- 4:51 AM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) created by
- […] [[Image(...)]]
- 3:28 AM Ticket #9821 (Crash in chain_trace_atoms) created by
- […]
- 12:11 AM Ticket #9820 (MemoryError opening mmCIF) created by
- […]
Sep 20, 2023:
- 5:35 PM Ticket #9819 (Send to Quest fails if headset sleeps) created by
- […]
- 4:17 PM Ticket #9559 (DICOM Segmentations 2D views should show overlay of active ...) closed by
- fixed: Done. …
- 4:12 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:25 PM Ticket #9817 (Second drag-and-drop produces KeyError) closed by
- can't reproduce: This same error was reported 2 weeks ago, ticket #9712. It looks like …
- 1:05 PM Ticket #9815 (Old session requires State methods from ProviderManager) closed by
- duplicate
- 12:58 PM Ticket #9817 (Second drag-and-drop produces KeyError) created by
- […]
- 12:57 PM Ticket #7094 (RFE: Persist tasks across ChimeraX sessions) closed by
- fixed: Job restore code merged to develop
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by
- duplicate
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) reopened by
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by
- fixed: This has been fixed in the daily build.
- 11:58 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Hi Ofer, Thanks for reporting this problem. It has been fixed in …
- 11:35 AM Ticket #9810 (EMDB TimeoutError) closed by
- nonchimerax: The error messages says the EMDB did not respond while fetching EMDB …
- 11:35 AM Ticket #9812 (Problems with .xtc trajectory visualization) closed by
- can't reproduce: Hi Samira, Thanks for reporting this problem. My reading of the …
- 11:01 AM Ticket #9811 (Crash handling text input) closed by
- can't reproduce
- 10:32 AM Ticket #9816 (Old session requires State methods from ProviderManager) created by
- […]
- 10:31 AM Ticket #9815 (Old session requires State methods from ProviderManager) created by
- […]
- 5:15 AM Ticket #9814 (name 'api_call_headers' is not defined) created by
- […]
- 5:08 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 3:30 AM Ticket #9812 (Problems with .xtc trajectory visualization) created by
- […]
- 2:36 AM Ticket #9811 (Crash handling text input) created by
- […]
Sep 19, 2023:
- 4:41 PM Ticket #9810 (EMDB TimeoutError) created by
- […]
- 3:24 PM Ticket #9807 (patching pyopenxr failed on windows) closed by
- fixed
- 2:17 PM Ticket #9809 (MemoryError opening mmCIF files) created by
- […]
- 12:26 PM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Graphics driver bug with ATI Radeon HD 3450 graphics card from 2008 …
- 11:43 AM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 11:30 AM Ticket #6386 (Avoid opening a zillion alignments) closed by
- fixed
- 11:09 AM Dev2023-9-25 created by
- 11:06 AM 2023-9-14 edited by
- (diff)
- 11:06 AM 2023-9-21 edited by
- (diff)
- 11:06 AM 2023-9-21 edited by
- (diff)
- 11:06 AM 2023-9-21 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 10:30 AM Ticket #9807 (patching pyopenxr failed on windows) created by
- Doing a clean install to see if it clears up some other weird behavior …
- 10:16 AM Ticket #9806 (Crash opening mmCIF file) closed by
- can't reproduce: 1.2.4
- 10:11 AM Ticket #9805 (Crash opening mmCIF file) closed by
- can't reproduce: 1.2.4
- 10:10 AM Ticket #9804 (Crash opening mmCIF file) closed by
- can't reproduce: Version 1.2.4
- 10:09 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:08 AM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:49 AM Ticket #9806 (Crash opening mmCIF file) created by
- […]
- 8:48 AM Ticket #9805 (Crash opening mmCIF file) created by
- […]
- 8:48 AM Ticket #9804 (Crash opening mmCIF file) created by
- […]
- 2:33 AM Ticket #9797 (Crash in "isolde start") closed by
- can't reproduce: Looks like it crashed while loading a pickle file in a separate …
- 12:37 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 18, 2023:
- 4:34 PM Dev2023-9-18 edited by
- (diff)
- 2:49 PM Ticket #9791 (cartoon style unnecessarily computes ribbon(?)) closed by
- duplicate: The basic problem is that secondary-structure calculation is very …
- 1:49 PM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:36 PM Ticket #9798 (Restore new session in old ChimeraX) closed by
- limitation: Hi Anamika, Although you can restore old sessions in newer versions …
- 12:42 PM Ticket #9801 (LookSee meeting file transfer very slow, 20 seconds) created by
- In a LookSee 2 or 3 person meeting at SLAC with Mike Schmid and JJ on …
- 12:32 PM Ticket #9800 (LookSee 3 person meeting disconnects when model closed) created by
- In testing 3-person LookSee (version 6) meetings at SLAC on September …
- 12:17 PM Ticket #9799 (Make sure 5 character CCD templates in mmCIF files work) created by
- The PDB expects to start using 5 character chemical component names by …
- 12:11 PM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 12:09 PM Ticket #9795 (MemoryError opening mmCIF) closed by
- duplicate
- 12:08 PM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') closed by
- can't reproduce: Duplicate of #9215
- 12:03 PM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by
- duplicate: Duplicate of #8706
- 11:58 AM Ticket #9792 (Rotamer library needs access to ui_name) closed by
- duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in …
- 7:49 AM Ticket #9798 (Restore new session in old ChimeraX) created by
- […]
- 7:20 AM Ticket #9797 (Crash in "isolde start") created by
- […]
- 1:48 AM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 17, 2023:
- 5:05 PM Ticket #9795 (MemoryError opening mmCIF) created by
- […]
- 7:52 AM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') created by
- […]
- 6:49 AM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
Sep 16, 2023:
Sep 15, 2023:
- 5:17 PM Ticket #9791 (cartoon style unnecessarily computes ribbon(?)) created by
- With the biological assembly of 1m4x (open pdbe_bio:1m4x maxa 1; 1.6 …
- 10:38 AM Ticket #9790 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi Dewight, Thanks for reporting this problem. The information in …
- 10:30 AM Ticket #9789 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:23 AM Ticket #9788 (Crash in garbage collection) closed by
- can't reproduce: Hi Daniel, Thanks for reporting this problem. The crash is in …
- 9:16 AM Ticket #9784 (al2co failed) closed by
- can't reproduce: I don't I want to try/except the CalledProcessError. I'd rather get …
- 8:21 AM Ticket #9790 (Crash showing Rapid Access at startup) created by
- […]
- 7:07 AM Ticket #9789 (MemoryError opening mmCIF files) created by
- […]
- 5:53 AM Ticket #9788 (Crash in garbage collection) created by
- […]
- 2:51 AM Ticket #9787 (ArtiaX session save: Unknown class name 'ArtiaX') created by
- […]
- 12:47 AM Ticket #9778 (StarMap: Rosetta executables not found) closed by
- not a bug: This message is a warning that the external Rosetta software suite was …
Sep 14, 2023:
- 5:14 PM Ticket #9786 (Release Clipper version for ChimeraX with Python 3.11) created by
- It would be useful to have Clipper available on the Toolshed for …
- 4:27 PM Ticket #9776 (Crash calculating contour surface) closed by
- can't reproduce: Segmentation fault computing contour surface in ChimeraX 1.3. Maybe …
- 3:51 PM Ticket #9785 (Allow dot surfaces with dot size > 1 pixel.) created by
- […]
- 12:43 PM Ticket #9784 (al2co failed) created by
- […]
- 12:26 PM Ticket #9783 (Graphics crash, macOS 10.15.7, Intel HD Graphics 6000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:23 PM 2023-9-14 edited by
- (diff)
- 12:19 PM Ticket #9781 (Crash in event loop while connecting to Toolshed) closed by
- can't reproduce
- 12:15 PM Ticket #9779 (Maestro using charmap encoding on Windows) closed by
- fixed: Fix: …
- 11:05 AM Ticket #9783 (Graphics crash, macOS 10.15.7, Intel HD Graphics 6000) created by
- […]
- 10:58 AM Ticket #9782 (Add clipper command documentation online) created by
- […]
- 10:03 AM Ticket #9781 (Crash in event loop while connecting to Toolshed) created by
- […]
- 7:19 AM Ticket #9780 (Draw tomogram plane: float division by zero) created by
- […]
- 5:32 AM Ticket #9779 (Maestro using charmap encoding on Windows) created by
- […]
- 5:27 AM Ticket #9778 (StarMap: Rosetta executables not found) created by
- […]
Sep 13, 2023:
- 11:51 PM Ticket #9777 (MemoryError opening mmCIF) created by
- […]
- 7:34 PM Ticket #9775 (Pseudobond drawing is None) closed by
- fixed: Fixed. The pseudobondSides settings was giving an error when …
- 7:13 PM Ticket #9773 (No space left on device saving movie) closed by
- nonchimerax: Same user reported this earlier today.
- 7:12 PM Ticket #9772 (Problem saving views in session: numpy array used as boolean) closed by
- duplicate: This was fixed on May 10 in the ChimeraX daily build. Bug is in …
- 6:59 PM Ticket #9762 (No space left on device recording a movie) closed by
- nonchimerax: Could catch this error and give a clearer error message. But it is …
- 4:27 PM Ticket #9776 (Crash calculating contour surface) created by
- […]
- 1:49 PM Ticket #9775 (Pseudobond drawing is None) created by
- […] preset.cxc
- 12:04 PM Ticket #9774 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:57 AM Ticket #9771 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:56 AM Ticket #9774 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:56 AM Ticket #9770 (Crash in event loop) closed by
- can't reproduce
- 11:54 AM Ticket #9769 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:47 AM Ticket #9773 (No space left on device saving movie) created by
- […]
- 11:34 AM Ticket #9766 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:30 AM Ticket #9765 (Peptide not circular) closed by
- not a bug
- 10:43 AM Ticket #9764 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) closed by
- can't reproduce: This is after a possible error in volume code, so may not be …
- 9:38 AM Ticket #9760 (Graphics crash, macOS 12.5, Apple M1 GPU) closed by
- can't reproduce: Was also using a ton of memory
- 8:14 AM Ticket #9772 (Problem saving views in session: numpy array used as boolean) created by
- […] Screenshot 2023-09-13 at 10.59.14.png
- 7:27 AM Ticket #9771 (MemoryError opening mmCIF files) created by
- […]
- 7:23 AM Ticket #9770 (Crash in event loop) created by
- […]
- 5:17 AM Ticket #9769 (Crash showing Rapid Access at startup) created by
- […]
- 2:42 AM Ticket #9768 (MemoryError opening mmCIF files) created by
- […]
- 1:56 AM Ticket #9767 (ISOLDE start sim: OpenMMException: Error compiling kernel) created by
- […]
Sep 12, 2023:
- 10:38 PM Ticket #9766 (MemoryError opening mmCIF files) created by
- […]
- 8:58 PM Ticket #9765 (Peptide not circular) created by
- […]
- 8:17 PM Ticket #9764 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by
- […]
- 8:15 PM Ticket #9763 (Volume: self.data is None) created by
- […]
- 5:24 PM Ticket #9753 (LookSee moves undisplayed models) closed by
- fixed: Fixed. Only displayed models can be moved with hand controllers now. …
- 3:48 PM Ticket #9762 (No space left on device recording a movie) created by
- […]
- 2:29 PM Ticket #9761 (Add ability to set pseudobond number of cylinder sides) closed by
- fixed
- 2:23 PM Ticket #9761 (Add ability to set pseudobond number of cylinder sides) created by
- […]
- 1:42 PM Ticket #9760 (Graphics crash, macOS 12.5, Apple M1 GPU) created by
- […]
- 1:31 PM Dev2023-9-18 created by
- 1:29 PM 2023-9-14 created by
- 1:27 PM DeveloperMeetings edited by
- (diff)
- 1:16 PM Ticket #9751 (Crash in Qt event loop after opening volume series) closed by
- can't reproduce: From the Log, the user did not open any data or run any commands when …
- 1:13 PM Ticket #9759 (Command logged incorrectly) created by
- […]
- 12:35 PM Ticket #9755 (Drawing volume: object of type 'NoneType' has no len()) closed by
- fixed: Fixed. Any code that added a model with the id already set did not …
- 11:50 AM Ticket #9758 (Surface Color tool: list index out of range) closed by
- fixed: Fixed. The Surface Color panel can only display color palettes of 8 …
- 10:22 AM Ticket #9758 (Surface Color tool: list index out of range) created by
- […]
- 10:18 AM Ticket #9757 (Fly command does not work) closed by
- not a bug: Hi Kayla, The fly command was added in ChimeraX 1.2, so you need to …
- 10:13 AM Ticket #9756 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:11 AM Ticket #9754 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:59 AM Ticket #9752 (Unknown crash) closed by
- can't reproduce
- 9:26 AM Ticket #9757 (Fly command does not work) created by
- […]
Sep 11, 2023:
- 11:07 PM Ticket #9756 (MemoryError opening mmCIF files) created by
- […]
- 10:20 PM Ticket #9755 (Drawing volume: object of type 'NoneType' has no len()) created by
- […]
- 10:15 PM Ticket #9754 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:31 PM Ticket #9753 (LookSee moves undisplayed models) created by
- When you drag a model by pressing the grip button, LookSee will move …
- 7:23 PM Ticket #9749 (Nucleotides assuming color RGBA is numpy array, not handling tuple) closed by
- fixed: I see this was fixed 4 days ago.
- 5:27 PM Ticket #9752 (Unknown crash) created by
- […]
- 4:28 PM Ticket #9581 (Rotamer library needs access to ui_name) closed by
- fixed
- 3:19 PM Ticket #9751 (Crash in Qt event loop after opening volume series) created by
- […]
- 2:09 PM Ticket #9750 (Write GLB: Python int too large to convert to C long) closed by
- limitation: The error says you attempted to save a GLTF file that would exceed the …
- 12:56 PM Dev2023-9-11 edited by
- (diff)
- 12:54 PM Dev2023-9-11 edited by
- (diff)
- 12:54 PM Dev2023-9-11 edited by
- (diff)
- 11:50 AM Ticket #9750 (Write GLB: Python int too large to convert to C long) created by
- […]
- 10:55 AM Ticket #9749 (Nucleotides assuming color RGBA is numpy array, not handling tuple) created by
- […]
- 10:49 AM Ticket #9745 (MOLE JSON: atom radius must be positive) closed by
- fixed: Fixed. Mole online tunnel file had a sphere with radius zero. Did …
- 10:48 AM Ticket #9748 (Write SDF format) created by
- This might be nice, because mol2 is not supported by rdkit while sdf …
- 10:40 AM Ticket #9742 (Unable to allocate memory for surface) closed by
- limitation: Surprising that a numpy memory allocation failed for just 1 Mbyte of …
- 10:06 AM Ticket #9747 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:05 AM Ticket #9746 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:01 AM Ticket #9744 (MemoryError opening mmCIF) closed by
- duplicate
- 10:00 AM Ticket #9743 (No changechains command) closed by
- not a bug: changechains first appeared in 1.5
- 9:49 AM Ticket #9735 (MemoryError opening mmCIF) closed by
- duplicate
- 9:34 AM Ticket #9747 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 9:18 AM Ticket #9746 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:13 AM Ticket #9745 (MOLE JSON: atom radius must be positive) created by
- […]
- 12:07 AM Ticket #9744 (MemoryError opening mmCIF) created by
- […]
Sep 10, 2023:
- 9:03 PM Ticket #9743 (No changechains command) created by
- […]
- 12:21 PM Ticket #9742 (Unable to allocate memory for surface) created by
- […]
- 1:46 AM Ticket #9741 (ArtiaX: slider: float division by zero) created by
- […]
- 12:44 AM Ticket #9740 (ArtiaX: problem loading Star file) created by
- […]
Sep 9, 2023:
Sep 8, 2023:
- 5:00 PM ChangeLog edited by
- (diff)
- 4:50 PM Ticket #9738 (LookSee shows point cloud with wrong unidirectional lighting) created by
- […] test.glb
- 3:36 PM Ticket #9736 (Opening point cloud gltf file: Second array dimension must have size ...) closed by
- fixed: Fixed. The gltf reader was trying to compute lighting normals for …
- 2:26 PM Ticket #9737 (Investigate voice-to-command interface) created by
- 1:54 PM Ticket #9736 (Opening point cloud gltf file: Second array dimension must have size ...) created by
- […]
- 1:38 PM Ticket #9735 (MemoryError opening mmCIF) created by
- […]
- 1:27 PM Ticket #9734 (Investigate lit volumetric rendering approaches) created by
- In our R01 grant we proposed add volumetric lighting (ie lighting …
- 1:22 PM Ticket #9733 (Decide on first application for UMAP visualization for high ...) created by
- In the current R01 grant we proposed support UMAP visualization of …
- 1:15 PM Ticket #9732 (Option to always show model number in label) created by
- Add preference to always show model number in atom-spec balloon for …
- 1:14 PM Ticket #9730 (Add "vr started" and "vr stopped" triggers) closed by
- fixed: Done
- 1:03 PM Dev2023-9-11 edited by
- (diff)
- 12:49 PM Ticket #9731 (Allow z axis rotation and translation by holding the ctrl key) closed by
- fixed: Done. Important to note that holding the ctrl key and then clicking …
- 12:38 PM Ticket #9731 (Allow z axis rotation and translation by holding the ctrl key) created by
- […]
- 11:57 AM Ticket #9662 (build start smiles) closed by
- fixed: Providers without "build start" subcommands now issue a message saying …
- 11:57 AM Ticket #9729 (Open two session at once) closed by
- duplicate: You are right ChimeraX always closes the previous session when you …
- 11:45 AM Ticket #9730 (Add "vr started" and "vr stopped" triggers) created by
- Zach requested new triggers to indicate when VR started or stopped to …
- 9:18 AM Ticket #9727 (Restore new session in old ChimeraX) closed by
- limitation
- 1:16 AM Ticket #9729 (Open two session at once) created by
- […]
Sep 7, 2023:
- 7:30 PM Ticket #9728 (DICOM: QThread: Destroyed while thread is still running) created by
- […]
- 7:29 PM Ticket #9727 (Restore new session in old ChimeraX) created by
- […]
- 7:18 PM 2023-9-7 edited by
- (diff)
- 6:26 PM Ticket #9725 (Graphics crash, macOS 13.5.1, Radeon Pro Vega 64) closed by
- nonchimerax: Apple Radeon graphics driver crash.
- 6:07 PM Ticket #9723 (Crash in QTabBar::paintEvent) closed by
- can't reproduce: No QPainter::begin message in log for this one.
- 5:35 PM Ticket #9722 (Unknown crash) closed by
- can't reproduce: Last thing in the log is showing a map.
- 5:31 PM Ticket #9721 (Crash handling text input) closed by
- can't reproduce: Seems highly correlated with "Mismatch between Cocoa and Carbon for …
- 5:27 PM Ticket #9726 (Profile Grids) created by
- Implement Profile Grids http://www.profilegrid.org
- 2:04 PM Dev2023-9-11 edited by
- (diff)
- 9:58 AM Ticket #9725 (Graphics crash, macOS 13.5.1, Radeon Pro Vega 64) created by
- […]
- 8:32 AM Ticket #9724 (SEQCROW: numpy error testing file readers) created by
- […]
- 6:51 AM Ticket #9723 (Crash in QTabBar::paintEvent) created by
- […]
- 6:08 AM Ticket #9722 (Unknown crash) created by
- […]
- 4:14 AM Ticket #9721 (Crash handling text input) created by
- […]
Sep 6, 2023:
- 6:38 PM 2023-9-7 edited by
- (diff)
- 4:33 PM Ticket #9720 (Segmentations: slice view drawings should be unrelated to 3D view drawings) created by
- Currently the slice views are not independently textured rectangles, …
- 1:30 PM Ticket #9660 (Color key vertical proportional spacing wrong) closed by
- fixed: Fixed. The fix will be in tomorrow's daily build. Fix: …
- 1:20 PM Ticket #9719 (Error starting VR with OpenXR: 'NoneType' object has no attribute ...) closed by
- fixed: This error happens when OpenXR says the headset is not ready. Then …
- 12:21 PM Ticket #9719 (Error starting VR with OpenXR: 'NoneType' object has no attribute ...) created by
- […]
- 9:53 AM Ticket #9718 (OrderDAGError saving GLTF in session) closed by
- duplicate
- 9:50 AM Ticket #9716 (MemoryError opening mmCIF files) closed by
- duplicate
- 6:58 AM Ticket #9718 (OrderDAGError saving GLTF in session) created by
- […]
Sep 5, 2023:
- 7:30 PM Ticket #9717 (Opening .cif: not a legal chain id) created by
- […]
- 6:08 PM Ticket #9716 (MemoryError opening mmCIF files) created by
- […]
- 5:53 PM ChangeLog edited by
- (diff)
- 5:22 PM Ticket #9715 (Wait for vsync broken on Windows) closed by
- fixed: Fixed. I changed the code to use QSurfaceFormat.setSwapInterval() and …
- 5:17 PM Ticket #9715 (Wait for vsync broken on Windows) created by
- […]
- 4:23 PM Ticket #9714 (Allow z aligning the centers of two sets of atoms) created by
- […]
- 3:56 PM Ticket #9713 (make "volume orthoplane off" revert to full region image rendering) closed by
- fixed: Done. Made volume command option "orthoplanes off" revert to …
- 3:53 PM Ticket #9713 (make "volume orthoplane off" revert to full region image rendering) created by
- […]
- 1:50 PM Dev2023-9-11 created by
- 1:49 PM 2023-9-7 created by
- 1:46 PM DeveloperMeetings edited by
- (diff)
- 1:28 PM Ticket #9712 (QKeyEvent in drag/drop code) closed by
- nonchimerax: Our code tests that the event.type() is QEvent.Type.Drop before …
- 12:11 PM Ticket #9712 (QKeyEvent in drag/drop code) created by
- […]
- 11:14 AM Ticket #9711 (Crash handling text input) closed by
- can't reproduce
- 11:09 AM Ticket #9709 (Dead region in sequence-associated regions) closed by
- can't reproduce: I don't even see where they opened an alignment!
- 10:36 AM Ticket #9708 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:31 AM Ticket #9706 (Crash saving session including maps) closed by
- can't reproduce
- 10:29 AM Ticket #9705 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:27 AM Ticket #9704 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:26 AM Ticket #9703 (MemoryError opening mmCIF files) closed by
- duplicate
- 9:58 AM Ticket #9702 (Crash handling text input) closed by
- can't reproduce
- 9:56 AM Ticket #9701 (MemoryError open mmCIF) closed by
- duplicate
- 7:49 AM Ticket #9711 (Crash handling text input) created by
- […]
- 3:59 AM Ticket #9710 (Possible MD template error) created by
- […]
- 2:53 AM Ticket #9709 (Dead region in sequence-associated regions) created by
- […]
Sep 4, 2023:
- 10:56 AM Ticket #9708 (MemoryError opening mmCIF files) created by
- […]
- 6:14 AM Ticket #9707 (EOFError restoring session) created by
- […]
- 5:57 AM Ticket #9706 (Crash saving session including maps) created by
- […]
- 12:20 AM Ticket #9705 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 3, 2023:
- 4:19 AM Ticket #9704 (MemoryError opening mmCIF files) created by
- […]
- 4:19 AM Ticket #9703 (MemoryError opening mmCIF files) created by
- […]
- 12:29 AM Ticket #9702 (Crash handling text input) created by
- […]
Sep 1, 2023:
- 8:16 PM Ticket #9701 (MemoryError open mmCIF) created by
- […]
- 3:25 PM Ticket #2015 ("mc" accelerator equivalent) closed by
- fixed: The marker command "position cofr" option does this.
- 12:33 PM Ticket #9700 (Add info commands to report atom and residue colors in hex notation) closed by
- fixed: Done. I added "info atomcolor" and "info rescolor" commands to report …
- 12:30 PM Ticket #9700 (Add info commands to report atom and residue colors in hex notation) created by
- From: Matzov Donna via ChimeraX-users <chimerax-users@…> …
- 12:24 PM Ticket #9699 (Residue.ribbon_color[:3] -> error, slicing on tinyarray not supported) closed by
- fixed: Fixed. I changed Residue ribbon_color and ring_color to return tuples …
- 12:20 PM Ticket #9699 (Residue.ribbon_color[:3] -> error, slicing on tinyarray not supported) created by
- […]
- 11:26 AM Ticket #9696 (restore_snapshot for "Volume" returned None) closed by
- fixed: Fixed. User restored a session and a volume file was missing and they …
- 10:35 AM Ticket #9698 (scipy import failure on Windows) created by
- […]
- 10:00 AM Ticket #9695 (MemoryError open mmCIF) closed by
- duplicate
- 9:59 AM Ticket #9694 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 9:58 AM Ticket #9693 (MemoryError open mmCIF) closed by
- duplicate: Attached file worked on my Mac
- 9:49 AM Ticket #9692 (MemoryError open mmCIF) closed by
- duplicate
- 9:47 AM Ticket #9691 (MemoryError open mmCIF) closed by
- duplicate
- 9:18 AM Ticket #9697 (SEQCROW: 'dict' object has no attribute 'other') created by
- […]
- 7:29 AM Ticket #9696 (restore_snapshot for "Volume" returned None) created by
- […]
- 2:09 AM Ticket #9695 (MemoryError open mmCIF) created by
- […]
- 1:45 AM Ticket #9694 (Crash showing Rapid Access at startup) created by
- […]
- 1:08 AM Ticket #9693 (MemoryError open mmCIF) created by
- […] 1bvn.cif
- 12:55 AM Ticket #9692 (MemoryError open mmCIF) created by
- […]
Aug 31, 2023:
- 11:00 PM Ticket #9691 (MemoryError open mmCIF) created by
- […]
- 5:55 PM Ticket #9680 (Crash in structure_chain_trace_atoms) closed by
- can't reproduce: Crashed in structure_chain_trace_atoms(void *mol) C++ code in molc.cpp …
- 5:48 PM Ticket #9681 (Crash generating dump traceback?) closed by
- duplicate: Similar to #9682.
- 5:48 PM Ticket #9682 (Crash in dump_traceback) closed by
- can't reproduce: Same crash from same reporter as #9681, with same Qt error printed to …
- 3:28 PM Ticket #9686 (Crash opening PDB file) closed by
- nonchimerax
- 3:28 PM Ticket #9687 (Crash opening PDB file) closed by
- nonchimerax
- 3:28 PM Ticket #9688 (Crash opening PDB file) closed by
- nonchimerax
- 3:24 PM Ticket #9690 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate
- 2:57 PM Ticket #9689 (Sorting error for chains in same structure with same ID) closed by
- fixed: Hi Sebastian, Thanks for reporting this problem. I have committed a …
- 2:48 PM Ticket #9690 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
- 1:58 PM 2023-8-31 edited by
- (diff)
- 1:58 PM 2023-8-31 edited by
- (diff)
- 1:49 PM 2023-8-31 edited by
- (diff)
- 1:48 PM Dev2023-9-4 edited by
- (diff)
- 1:38 PM Ticket #9689 (Sorting error for chains in same structure with same ID) created by
- […]
- 12:52 PM NIAID2023 edited by
- (diff)
- 12:24 PM Ticket #9685 (Crash setting pseudobond group color) closed by
- can't reproduce
- 12:17 PM Ticket #9684 (Cycle detected saving session with GLTF model) closed by
- duplicate: This was fixed about a week ago. No gltf model could be saved due to …
- 10:56 AM Ticket #9683 (Crash in event loop) closed by
- can't reproduce
- 10:44 AM Ticket #9688 (Crash opening PDB file) created by
- […]
- 10:40 AM Ticket #9687 (Crash opening PDB file) created by
- […]
- 9:38 AM Ticket #9679 (Crash handling text input) closed by
- can't reproduce
- 9:29 AM Ticket #9686 (Crash opening PDB file) created by
- […]
- 9:24 AM Ticket #9685 (Crash setting pseudobond group color) created by
- […]
- 8:23 AM Ticket #9684 (Cycle detected saving session with GLTF model) created by
- […]
- 7:58 AM Ticket #9683 (Crash in event loop) created by
- […]
- 7:00 AM Ticket #9682 (Crash in dump_traceback) created by
- […]
- 6:58 AM Ticket #9681 (Crash generating dump traceback?) created by
- […]
- 6:22 AM Ticket #9680 (Crash in structure_chain_trace_atoms) created by
- […]
- 5:35 AM Ticket #9679 (Crash handling text input) created by
- […]
Aug 30, 2023:
- 7:38 PM Ticket #9678 (Oculus Quest fails to connect by AirLink) created by
- The Quest Pro and Quest 2 headsets sometimes cannot be connected to a …
- 4:18 PM Ticket #9677 (Segmentation systems should use instanced drawing where they can) created by
- Currently the previews of a segmentation in 2D use copies of the …
- 3:55 PM Ticket #9671 (Fetch failure forming HTML user agent) closed by
- can't reproduce: Looks like it seg faulted in the standard library.
- 2:19 PM Ticket #9675 (ChimeraX won't start - dell precision M6500) closed by
- limitation: So what do you mean by "won't start"? Do you see any dialog at all? …
- 2:03 PM Ticket #9676 (javaScriptConsoleMessage KeyError) closed by
- duplicate: Hi Alessandro, Thanks for reporting this problem. We believe it is …
- 1:46 PM Ticket #9674 (QOpenGLContext::makeCurrent() called with non-opengl surface, Windows, ...) closed by
- can't reproduce: User opened a session after startup and graphics context could not be …
- 1:25 PM Ticket #9672 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Apple Radeon graphics driver crash.
- 12:01 PM Ticket #9673 (Sequence viewer: bad nextCheckState() return value) closed by
- fixed
- 11:55 AM Ticket #9663 (Graphics crash, macOS 13.5, Apple M1 Pro) closed by
- limitation: The crash report shows it crashed in Apple's OpenGL graphics driver. …
- 11:36 AM Ticket #9669 (hbonds: wrong number of acc_phi_psi() positional arguments) closed by
- not a bug: Hi Sajid, Your PDB has bad CONECT records, which result in bad / …
- 10:56 AM Ticket #9668 (MemoryError open mmCIF) closed by
- duplicate
- 10:23 AM Ticket #9666 (MemoryError open mmCIF) closed by
- duplicate
- 10:03 AM Ticket #9676 (javaScriptConsoleMessage KeyError) created by
- […]
- 10:00 AM Ticket #9664 (Crash reading PDB file) closed by
- can't reproduce
- 7:01 AM Ticket #9675 (ChimeraX won't start - dell precision M6500) created by
- […]
- 6:50 AM Ticket #9674 (QOpenGLContext::makeCurrent() called with non-opengl surface, Windows, ...) created by
- […]
- 6:41 AM Ticket #9673 (Sequence viewer: bad nextCheckState() return value) created by
- […]
- 4:57 AM Ticket #9672 (Graphics crash, macOS 11.4, Radeon Pro 580) created by
- […]
- 4:55 AM Ticket #9671 (Fetch failure forming HTML user agent) created by
- […]
- 1:08 AM Ticket #9670 (MemoryError open mmCIF) created by
- […]
Aug 29, 2023:
- 10:29 PM Ticket #9669 (hbonds: wrong number of acc_phi_psi() positional arguments) created by
- […] saved modified mutated 10 and 10 and 5 and 5.pdb
- 8:08 PM Ticket #9668 (MemoryError open mmCIF) created by
- […]
- 8:07 PM Ticket #9667 (MemoryError open mmCIF) created by
- […]
- 8:05 PM Ticket #9666 (MemoryError open mmCIF) created by
- […]
- 6:02 PM Ticket #9665 (volume defaultvalues command: KeyError: 'tilted_slab') closed by
- fixed: Fixed. Forgot to remove tilted_slab option from volume defaultvalues …
- 5:59 PM Ticket #9665 (volume defaultvalues command: KeyError: 'tilted_slab') created by
- […]
- 5:54 PM Ticket #9652 (Volume rendering modes not honored) closed by
- fixed: Fixed. A change in the volume command code a few days ago made when …
- 3:25 PM Ticket #9664 (Crash reading PDB file) created by
- […]
- 2:39 PM Ticket #9663 (Graphics crash, macOS 13.5, Apple M1 Pro) created by
- […]
- 11:16 AM Ticket #9661 (glClear: invalid framebuffer operation) closed by
- can't reproduce: glClear() invalid framebuffer operation in status line on expose …
- 10:13 AM Ticket #9662 (build start smiles) created by
- […]
- 10:10 AM 2023-8-31 created by
- 10:10 AM 2023-8-24 edited by
- (diff)
- 10:09 AM Dev2023-9-4 created by
- 10:07 AM DeveloperMeetings edited by
- (diff)
- 9:47 AM Ticket #9659 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) closed by
- duplicate
- 9:24 AM Ticket #9656 (Crash using open/save dialog) closed by
- can't reproduce
- 9:23 AM Ticket #9655 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 5:49 AM Ticket #9661 (glClear: invalid framebuffer operation) created by
- […]
- 1:35 AM Ticket #9660 (Color key vertical proportional spacing wrong) created by
- […] Snipaste_2023-08-29_16-34-46.png
- 1:17 AM Ticket #9659 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by
- […]
- 1:17 AM Ticket #9658 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by
- […]
Aug 28, 2023:
- 11:49 PM Ticket #9657 (Crash using open/save dialog) created by
- […]
- 11:47 PM Ticket #9656 (Crash using open/save dialog) created by
- […]
- 11:21 PM Ticket #9645 (Toolshed compatibility reporting wrong) closed by
- limitation: Not compatible is correct. I'll look into giving the reason why in …
- 10:56 PM Ticket #9644 (Toolshed search broken) closed by
- fixed: Fixed. Was typo in conversion to Django 4.
- 7:02 PM Ticket #9651 (OpenXR: IndexError into frame buffers) closed by
- fixed: Fixed. Surprisingly my tests on Vive Pro with OpenXR never give this …
- 6:19 PM Ticket #9655 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:15 PM Ticket #9638 (glDrawBuffer: invalid operation while setting volume level) closed by
- can't reproduce: OpenGL graphics error, apparently no GL_BACK buffer when expose event …
- 5:29 PM ChangeLog edited by
- (diff)
- 5:27 PM ChangeLog edited by
- (diff)
- 5:13 PM Ticket #9604 (Mol2 type not updated) closed by
- fixed: ChimeraX will now not output the mol2 types from the input if it seems …
- 5:03 PM Ticket #9635 (Read HDF5 during session restore: file signature not found) closed by
- nonchimerax: When you try to open a ChimeraX session open …
- 4:39 PM Ticket #9654 (Allow saving movie frames with transparent background) closed by
- fixed: Added movie record transparentBackground option. This feature is …
- 4:34 PM Ticket #9654 (Allow saving movie frames with transparent background) created by
- Begin forwarded message: From: Christian Schafmeister <> Subject: Re: …
- 4:22 PM Dev2023-8-28 edited by
- (diff)
- 2:44 PM Ticket #9653 (MouseModes: uses_wheel is unused) created by
- The MouseMode base class has a uses_wheel property that looks like …
- 2:28 PM Ticket #9652 (Volume rendering modes not honored) created by
- […]
- 11:32 AM Ticket #9650 (ArtiaX: problem loading Star file) closed by
- duplicate
- 11:30 AM Ticket #9648 (Web service failure) closed by
- not a bug: Hi Debbie, The way that Chimera and ChimeraX communicate with their …
- 11:22 AM Ticket #9646 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Luca, Thanks for reporting this problem. We believe it is caused …
- 11:15 AM Ticket #9643 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:14 AM Ticket #9642 (Crash handling text input) closed by
- can't reproduce
- 11:09 AM Ticket #9639 (Crash in modal dialog during screen change) closed by
- can't reproduce
- 11:05 AM Ticket #9637 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:13 AM Ticket #9651 (OpenXR: IndexError into frame buffers) created by
- […] 8a40.pdb
Aug 27, 2023:
- 8:21 PM Ticket #9650 (ArtiaX: problem loading Star file) created by
- […]
- 7:20 PM Ticket #9649 (ArtiaX: problem loading Star file) created by
- […]
- 4:51 AM Ticket #9648 (Web service failure) created by
- […]
Aug 26, 2023:
- 4:43 PM Ticket #9647 (ISOLDE: UNL template has no bonds) created by
- […]
- 11:47 AM Ticket #9646 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 25, 2023:
- 10:30 PM Ticket #9645 (Toolshed compatibility reporting wrong) created by
- […]
- 10:28 PM Ticket #9644 (Toolshed search broken) created by
- […]
- 8:08 PM Ticket #9643 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:50 PM Ticket #9642 (Crash handling text input) created by
- […]
- 6:25 PM Ticket #9641 (VR glitches on Nvidia 4070 Ti graphics) created by
- Phil Cruz reports that the BCBB BioViz lab has several new computers …
- 6:08 PM Ticket #9640 (Use OpenXR instead of SteamVR for virtual reality rendering) created by
- The OpenXR API for virtual reality has gained wide-spread acceptance. …
- 12:15 PM Dev2023-8-28 edited by
- (diff)
- 12:15 PM Dev2023-8-28 edited by
- (diff)
- 12:14 PM Ticket #9634 (Blast from AlphaFold: self.job.model_name is None) closed by
- fixed: Should already be fixed in the daily builds.
- 6:56 AM Ticket #9639 (Crash in modal dialog during screen change) created by
- […]
Aug 24, 2023:
- 10:57 PM Ticket #9638 (glDrawBuffer: invalid operation while setting volume level) created by
- […]
- 8:14 PM Ticket #9637 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:53 PM Ticket #9636 (Cannot open *.glb.gz or *.dae.gz files) created by
- Phil reported in today's NIAID ChimeraX meeting that David Chen was …
- 4:41 PM NIAID2023 edited by
- (diff)
- 4:40 PM NIAID2023 edited by
- (diff)
- 4:39 PM NIAID2023 edited by
- (diff)
- 3:40 PM 2023-8-24 edited by
- (diff)
- 12:06 PM Ticket #9635 (Read HDF5 during session restore: file signature not found) created by
- […] TS14_cm.cxs
- 10:48 AM Ticket #9632 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Apple Radeon graphics driver crash.
- 10:38 AM Ticket #9634 (Blast from AlphaFold: self.job.model_name is None) created by
- […]
- 10:38 AM Ticket #9633 (MemoryError opening mmCIF) closed by
- duplicate
- 10:36 AM Ticket #9631 (Crash in event loop, was running RestServer) closed by
- can't reproduce
- 7:23 AM Ticket #9633 (MemoryError opening mmCIF) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
