Timeline



Jul 16, 2021:

8:20 PM Ticket #4911 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
1:37 PM Ticket #4910 (Crash drawing shadow maps) created by apadavannil@…
[…]
12:58 PM Ticket #4908 (Dual display crash) closed by Tom Goddard
duplicate: The Qt window toolkit crashed trying to initialize OpenGL functions on …
12:52 PM Ticket #4907 (Second use of VR: CompositorError_DoNotHaveFocus) closed by Tom Goddard
duplicate: Fixed in ChimeraX 1.2 I think. ChimeraX 1.1 did not properly clean up …
12:29 PM Ticket #4909 (Dual display crash) closed by pett
duplicate
10:37 AM Ticket #4909 (Dual display crash) created by chimerax-bug-report@…
[…]
9:53 AM Ticket #4903 (ISOLDE: fix unparameterized residue: cannot unpack non-iterable ...) closed by Tristan Croll
fixed: Fixed. Now properly uses the setData() and data() methods.
9:33 AM Ticket #4905 (Crash opening PDB file) closed by pett
can't reproduce: Perhaps due to non-ASCII characters, which has since been fixed
8:33 AM Ticket #4908 (Dual display crash) created by Dbarrero@…
[…]
3:59 AM Ticket #4907 (Second use of VR: CompositorError_DoNotHaveFocus) created by irsa.abbasi29@…
[…]

Jul 15, 2021:

10:40 PM Ticket #4906 (Option SpinBox already deleted) created by chimerax-bug-report@…
[…]
10:00 PM Ticket #4905 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
9:28 PM Ticket #4904 (Unknown crash) created by chimerax-bug-report@…
[…]
5:58 PM Ticket #4661 (Update to Python 3.9) closed by Tom Goddard
fixed: Done. Updated ChimeraX from Python 3.8.10 to 3.9.6. OpenMM updated …
3:54 PM Ticket #2076 (Clear instructions for preparing bundle help files) closed by pett
fixed
3:02 PM NTTData edited by Tom Goddard
(diff)
2:02 PM NTTData edited by Elaine Meng
(diff)
1:57 PM NTTData edited by Elaine Meng
(diff)
1:50 PM NTTData edited by Elaine Meng
(diff)
1:30 PM NTTData edited by Elaine Meng
(diff)
1:17 PM NTTData edited by Elaine Meng
(diff)
12:22 PM Ticket #4903 (ISOLDE: fix unparameterized residue: cannot unpack non-iterable ...) created by chimerax-bug-report@…
[…]
11:40 AM Ticket #4841 (Atomic molc.cpp uses deprecated Python 3.9 calls) closed by pett
fixed
10:54 AM Ticket #4387 (Make dssp info programmatically available) closed by pett
fixed: Added an optional argument to Structure.compute_secondary_structure(), …
9:07 AM Ticket #4902 ("key" command does not show color key if Color Key graphical interface ...) created by Elaine Meng
e.g. if a click in the window was too short to draw a viable key it is …
1:43 AM Ticket #4900 (OpenMM: simulation too big for old GPU) closed by Tristan Croll
duplicate
1:43 AM Ticket #4900 (OpenMM: simulation too big for old GPU) reopened by Tristan Croll
1:41 AM Ticket #4900 (OpenMM: simulation too big for old GPU) closed by Tristan Croll
duplicate: Ancient hardware; tried to create an OpenCL buffer bigger than the GPU …

Jul 14, 2021:

3:48 PM Ticket #4901 (Toolshed: Creating download path failed) created by hernanando.sosa@…
[…]
3:24 PM Ticket #4900 (OpenMM: simulation too big for old GPU) created by chimerax-bug-report@…
[…]
2:53 PM Ticket #4898 (Crash opening TIFF stack) closed by Tom Goddard
fixed: Maybe fixed. Crash was in box_cuts() computing how perpendicular view …
2:03 PM Ticket #4899 (RFE: if "typed only" pref is off, command history should list ...) created by Elaine Meng
The reason is that when I open a cxc file I would like to be able to …
1:55 PM Ticket #4898 (Crash opening TIFF stack) created by chimerax-bug-report@…
[…]
11:24 AM Ticket #4734 (Make database fetch names case insensitive) closed by pett
fixed
9:24 AM Ticket #4861 (Failure running antechamber on Windows) closed by pett
fixed: Pretty sure the problem is fixed now (same problem on Mac is fixed). …
8:36 AM Ticket #4895 (Crash updating log/HTML widget(?)) closed by pett
can't reproduce
8:18 AM Ticket #4897 (Crash getting available bundles from Toolshed) created by chimerax-bug-report@…
[…]
7:38 AM Ticket #4896 (OpenMMException: No compatible OpenCL platform is available) created by chimerax-bug-report@…
[…]
5:14 AM Ticket #4895 (Crash updating log/HTML widget(?)) created by chimerax-bug-report@…
[…]

Jul 13, 2021:

10:52 AM Dev2021-7-22 created by Tom Goddard
10:51 AM 2021-7-15 created by Tom Goddard
10:50 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:30 AM Ticket #4893 (Unknown crash) closed by pett
can't reproduce
9:44 AM Ticket #4892 (Unknown crash under Rosetta emulation) closed by pett
can't reproduce
4:56 AM Ticket #4894 (ResiduesArg slow with outermost ~) created by Tristan Croll
[…]
4:29 AM Ticket #4893 (Unknown crash) created by chimerax-bug-report@…
[…]
3:43 AM Ticket #4892 (Unknown crash under Rosetta emulation) created by chimerax-bug-report@…
[…]

Jul 12, 2021:

6:29 PM ChangeLog edited by Elaine Meng
(diff)
6:26 PM ChangeLog edited by Elaine Meng
(diff)
2:01 PM ChangeLog edited by Elaine Meng
(diff)
1:08 PM Ticket #4877 (addh failed: TypeError: unsupported operand type(s) for *: 'NoneType' ...) closed by pett
can't reproduce: Without the structure, it's impossible to determine if this is a …
12:13 PM Ticket #4891 (glUniformMatrix4fv: invalid operation) closed by Tom Goddard
can't reproduce: The glUseProgram() call was just only a few calls earlier in the …
11:56 AM Ticket #4885 (Translate PermissionError into UserError) closed by pett
fixed
11:19 AM Ticket #4891 (glUniformMatrix4fv: invalid operation) created by goddard@…
[…]
11:16 AM Ticket #4890 (Have Updates report newer production releases) created by pett
It would be nice to have the Updates tool show when there's a newer …
10:58 AM Ticket #4886 (Crash in initializeOpenGLFunctions) closed by Tom Goddard
nonchimerax: The Qt window toolkit crashed trying to resize a widget when it tried …
10:21 AM Ticket #4889 (Modeller: Internal Server Error) closed by pett
duplicate: Hi Nick, Thanks for reporting this problem. It was fixed in late …
10:04 AM Ticket #4887 (Crash during event on dock widget) closed by pett
can't reproduce: Old version
9:58 AM Ticket #4884 ('MainWindow' object has no attribute 'folder_open_cb') closed by pett
duplicate: Hi Andrea, Thanks for reporting this problem. This issue has been …
9:00 AM Ticket #4889 (Modeller: Internal Server Error) created by Nick.Hoppe@…
[…]
8:00 AM Ticket #4888 (OpenMMException: invalid value for --gpu-architecture) created by vds7@…
[…]
7:39 AM Ticket #4887 (Crash during event on dock widget) created by chimerax-bug-report@…
[…]
12:43 AM Ticket #4886 (Crash in initializeOpenGLFunctions) created by hrishikesh.das@…
[…]

Jul 11, 2021:

10:21 AM Ticket #4885 (Translate PermissionError into UserError) created by chimerax-bug-report@…
[…]

Jul 10, 2021:

1:53 AM Ticket #4884 ('MainWindow' object has no attribute 'folder_open_cb') created by andrea.graziadei@…
[…]

Jul 9, 2021:

6:23 PM Ticket #4883 (Add scalebar command) closed by Tom Goddard
fixed: Done. I added a scalebar command which creates a 2D label named …
6:19 PM Ticket #4883 (Add scalebar command) created by Tom Goddard
11:45 AM Ticket #4881 (Pseudobonds don't go to atom with ribbon when not hiding backbone atoms) closed by Tom Goddard
fixed: Fixed. Atom::effective_coord() was giving the ribbon position even …
11:25 AM Ticket #4878 (No graphics shown, Windows 10, graphics driver problem) closed by Tom Goddard
nonchimerax
11:21 AM Ticket #4880 (OpenGL error starting on Windows 7) closed by Tom Goddard
nonchimerax
11:18 AM Ticket #4879 (Graphics crash, macOS 11.4, Radeon Pro 575X) closed by Tom Goddard
nonchimerax
8:25 AM Ticket #4882 (Attribute specifier with string instead of number gives traceback) created by chimerax-bug-report@…
[…]
2:04 AM Ticket #4881 (Pseudobonds don't go to atom with ribbon when not hiding backbone atoms) created by Tristan Croll
[…]

Jul 8, 2021:

6:49 PM Dev2021-7-8 edited by Tom Goddard
(diff)
6:49 PM Dev2021-7-8 edited by Tom Goddard
(diff)
6:26 PM 2021-7-8 edited by Tom Goddard
(diff)
5:49 PM Ticket #4874 (Unknown crash) closed by Tom Goddard
can't reproduce: ChimeraX crashed on Windows but the crash report gives no information …
5:48 PM Ticket #4880 (OpenGL error starting on Windows 7) created by turuncs@…
[…]
4:07 PM Ticket #4879 (Graphics crash, macOS 11.4, Radeon Pro 575X) created by chimerax-bug-report@…
[…]
12:43 PM Ticket #4878 (No graphics shown, Windows 10, graphics driver problem) created by kdamico@…
[…] ChimeraX_Not_Loading.PNG
12:30 PM Ticket #4877 (addh failed: TypeError: unsupported operand type(s) for *: 'NoneType' ...) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #4875 (Unknown crash) closed by pett
can't reproduce
8:28 AM Ticket #4876 (Traceback when bundle already installed) created by safia.aljedani@…
[…]
6:32 AM Ticket #4872 (Crash in OpenMM finding clashes) closed by Tristan Croll
can't reproduce: Not going to be able to do much about this without a reproducible test …
12:04 AM Ticket #4875 (Unknown crash) created by chimerax-bug-report@…
[…]

Jul 7, 2021:

9:14 PM Ticket #4874 (Unknown crash) created by sohambiswas1998@…
[…]
4:56 PM Ticket #4840 (Altloc Explorer improvements) closed by pett
duplicate: Duplicate of #4168
2:20 PM Ticket #4873 (Add "bring" option to fitmap to move associated models) created by alpayseven@…
Begin forwarded message: From: Alpay Burak Seven via ChimeraX-users …
1:59 PM Ticket #4854 (Allow specifying frame start, stop and step when opening DCD ...) closed by pett
duplicate: Duplicate of #4501
1:53 PM Ticket #4861 (Failure running antechamber on Windows) reopened by pett
You are right -- the fix isn't in the build. I'll re-close this …
1:10 PM Ticket #4859 (AddH: metal may not have alt loc) closed by pett
fixed: Use main metal position if it doesn't have alt locs. Also, add alt …
12:57 PM Ticket #4872 (Crash in OpenMM finding clashes) created by chimerax-bug-report@…
[…]
11:05 AM Ticket #4870 (Segger: n is None) closed by Tom Goddard
can't reproduce: User tried Segger menu Regions / Color Density Map and it was trying …
10:50 AM Ticket #4868 (Crash calculating surface geometry) closed by Tom Goddard
can't reproduce: ChimeraX crashed trying to compute a molecular surface, looks like the …
10:37 AM Ticket #4871 (Scenes in mmCIF) created by Tristan Croll
[…]
10:37 AM Ticket #4857 (Crash opening PDB file) closed by pett
fixed: Hi Winston, Yes, ChimeraX 1.2.5 will crash on non-ASCII characters in …
9:42 AM Ticket #4870 (Segger: n is None) created by chimerax-bug-report@…
[…]
9:29 AM Ticket #4867 (Crash opening PDB file) closed by pett
can't reproduce
7:37 AM Ticket #4869 (Treat file suffixes as case independent) created by Tristan Croll
[…]

Jul 6, 2021:

11:22 PM Ticket #4868 (Crash calculating surface geometry) created by vdvornyk@…
[…]
8:58 PM Ticket #4867 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
7:41 PM Dev2021-7-8 edited by Tom Goddard
(diff)
7:40 PM Dev2021-7-8 created by Tom Goddard
7:38 PM 2021-7-8 created by Tom Goddard
7:36 PM DeveloperMeetings edited by Tom Goddard
(diff)
5:44 PM Ticket #4861 (Failure running antechamber on Windows) closed by pett
fixed: Should be fixed in tomorrow's build. Thanks for reporting this problem.
1:50 PM Ticket #4862 (Same Python trace shown dozens of times) closed by Tom Goddard
can't reproduce: ChimeraX crashed while trying to show the Save dialog in this line …
1:39 PM Ticket #4866 (HBonds: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by pett
can't reproduce: Something wonky about user's custom PDB file; probably bad CONECT records
1:31 PM Ticket #4864 (Fwd: Trouble accessing Autodock Vina through Chimera) closed by pett
nonchimerax: Hi Nicole, You sent this to the address for reporting bugs in our new …
12:55 PM Ticket #4866 (HBonds: acc_phi_psi() takes 8 positional arguments but 9 were given) created by chimerax-bug-report@…
[…]
10:55 AM Ticket #4860 (AddH: crash in simple eval()) closed by pett
can't reproduce
10:43 AM Ticket #4858 (Crash adding hydrogens) closed by pett
can't reproduce
10:29 AM Ticket #4865 (Make Windows Mixed Reality use Oculus VR hand controller defaults.) created by tolung.bio@…
On Jul 2, 2021, at 7:10 PM, Gökhan Tolun via ChimeraX-users …
10:23 AM Ticket #4856 ('SaveModelOptionWidget' object has no attribute '_name') closed by pett
duplicate
10:05 AM Ticket #4855 (Empty Favorites menu) closed by pett
not a bug: Hi Andrew, ChimeraX doesn't pre-populate the Favorites menu with …
8:40 AM Ticket #4864 (Fwd: Trouble accessing Autodock Vina through Chimera) created by neostrovsky@…
[…]
12:41 AM Ticket #4863 (Crash deleting residues) created by emcrae@…
[…]
12:22 AM Ticket #4862 (Same Python trace shown dozens of times) created by kamadak@…
[…]

Jul 5, 2021:

7:58 PM Ticket #4861 (Failure running antechamber on Windows) created by wenxiang.cao@…
[…] antechanber error.PNG
8:41 AM Ticket #4860 (AddH: crash in simple eval()) created by chimerax-bug-report@…
[…]
3:52 AM Ticket #4859 (AddH: metal may not have alt loc) created by Tristan Croll
[…]

Jul 4, 2021:

12:33 PM Ticket #4858 (Crash adding hydrogens) created by chimerax-bug-report@…
[…]
6:44 AM Ticket #4857 (Crash opening PDB file) created by winston@…
[…]
2:08 AM Ticket #4856 ('SaveModelOptionWidget' object has no attribute '_name') created by chimerax-bug-report@…
[…]

Jul 3, 2021:

8:40 AM Ticket #4855 (Empty Favorites menu) created by anmugo@…
[…]

Jul 2, 2021:

5:04 PM Ticket #4854 (Allow specifying frame start, stop and step when opening DCD ...) created by goddard@…
[…]
10:58 AM Ticket #4853 (Generic Linux build broken) created by Tom Goddard
The generic linux build has been broken since June 23, more than a …
10:23 AM Ticket #4852 (Patch of suds_jurko during linux build fails) created by Tom Goddard
In linux unified build output I see the suds_jurko patch added 11 …

Jul 1, 2021:

7:34 PM Ticket #4851 (Export atomic models with joints for GLTF animation) created by Tom Goddard
GLTF files can contain "skins" which use "joints" to animate a model, …
7:20 PM Ticket #4850 (Add GLTF export of atomic structure morphs) created by Tom Goddard
The GLTF format supports morph animations which could be used to show …
5:48 PM Ticket #4686 (Include logged commands in crash reports) closed by Tom Goddard
fixed: Done. Recorded log messages to a temporary file so that after crash …
5:44 PM Ticket #4849 (Test of crash report including log) closed by Tom Goddard
worksforme
5:41 PM Ticket #4849 (Test of crash report including log) created by goddard@…
[…]
3:35 PM Ticket #4848 (AddH: name 'chain' is not defined) closed by pett
duplicate: Hi Jim, Thanks for reporting this problem. It was fixed roughly a …
2:15 PM NTTData edited by Tom Goddard
(diff)
2:00 PM NTTData edited by Elaine Meng
(diff)
1:59 PM NTTData edited by Elaine Meng
(diff)
1:55 PM Ticket #4848 (AddH: name 'chain' is not defined) created by jamess.davies@…
[…]
1:52 PM NTTData edited by Elaine Meng
(diff)
1:42 PM NTTData edited by Elaine Meng
(diff)
1:17 PM NTTData edited by Elaine Meng
(diff)
11:53 AM 2021-7-1 edited by Tom Goddard
(diff)

Jun 30, 2021:

5:54 PM Ticket #4836 (Unknown crash) closed by pett
can't reproduce: Hi Yen-Li, Thanks for getting back to us. Yeah, we are going to have …
4:36 PM Ticket #4697 (Open dialog vs. required args) closed by pett
fixed: Opening a coordinates file will now throw up a structure chooser if …
12:32 PM Ticket #4847 (Windows 10 VM) created by paul_straight@…
[…]
11:56 AM Ticket #4846 (Saving color information) closed by pett
not a bug: Hi Doret, The 'END" error is harmless and you can ignore it. We will …
11:45 AM Ticket #4844 (Unknown crash under Rosetta emulation) closed by pett
can't reproduce
2:15 AM Ticket #4846 (Saving color information) created by doretrosie@…
[…]

Jun 29, 2021:

7:35 PM Ticket #4843 (Unable to install chimerax on ubuntu 21.04) closed by Greg Couch
limitation: Thank you. I see that you are using Ubuntu 20.10 and that a newer …
7:15 PM Ticket #4845 (Traceback parsing atom spec @@display=True) created by goddard@…
[…]
6:56 PM ChangeLog edited by Elaine Meng
(diff)
6:53 PM ChangeLog edited by Elaine Meng
(diff)
6:49 PM ChangeLog edited by Elaine Meng
(diff)
6:22 PM Ticket #4844 (Unknown crash under Rosetta emulation) created by chimerax-bug-report@…
[…]
5:36 PM 2021-7-1 created by Tom Goddard
5:33 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:36 PM Ticket #4831 (Opening MRC file: getcwd: No such file or directory) closed by Tom Goddard
nonchimerax: This error saving an MRC file is because ChimeraX is running in a …
4:35 PM Ticket #4843 (Unable to install chimerax on ubuntu 21.04) created by osmelfleitas83@…
[…]
4:25 PM Ticket #4839 (Crash in chem_group:: find_group) closed by pett
can't reproduce: Would need the structure in order to investigate further.
4:17 PM Ticket #4828 (3kds assembly 1: index is out of bounds) closed by Tom Goddard
fixed: Fixed. Opened 3kds and clicked log assemblies table assembly 1. …
4:14 PM Ticket #4842 (Long atom spec crashes ChimeraX) created by diaamayaram@…
[…]
3:59 PM Ticket #4841 (Atomic molc.cpp uses deprecated Python 3.9 calls) created by Tom Goddard
make install ../../../ChimeraX.app/Contents/bin/ChimeraX --nogui …
3:51 PM Ticket #4840 (Altloc Explorer improvements) created by Elaine Meng
Would it be possible to make it more analogous to Rotamers, in that …
2:47 PM ChangeLog edited by Elaine Meng
(diff)
2:36 PM ChangeLog edited by Elaine Meng
(diff)
1:57 PM Ticket #4835 (Crash in mouse modes cursor handling) closed by Tom Goddard
can't reproduce: Hard to fathom the stack traces. The main thread crashed and was in …
12:35 PM Ticket #4839 (Crash in chem_group:: find_group) created by chimerax-bug-report@…
[…]
12:11 PM Ticket #4832 (glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Showing volume maps. OpenGL error computing shadow maps. RTX 2080 Ti …
10:49 AM Ticket #4837 (Problems reading AutoDock Vina results) closed by pett
duplicate: Hi Simona, The handling of AutoDock Vina files was recently improved …
10:09 AM Ticket #4830 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
duplicate: Hi Hui-Ting, Thanks for reporting this problem. It has been fixed in …
9:19 AM Ticket #4827 (Unknown problem) closed by pett
invalid: No actual problem reported.
9:17 AM Ticket #4826 (Freeze in "preset original") closed by pett
nonchimerax: As per this report, fixed by graphics driver upgrade
9:15 AM Ticket #4825 (Freeze in "preset original") closed by pett
nonchimerax: Fixed by later graphics driver upgrade.
7:37 AM Ticket #4838 (Unknown crash) created by marharytakrylova1@…
[…]
4:41 AM Ticket #4837 (Problems reading AutoDock Vina results) created by simona.gricar@…
[…]
3:54 AM Ticket #4836 (Unknown crash) created by yen-li.li@…
[…]

Jun 28, 2021:

10:51 PM Ticket #4835 (Crash in mouse modes cursor handling) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #4834 (Catch "can't write" error) created by chimerax-bug-report@…
[…]
9:51 AM Ticket #4833 (Session restore: 'FeatureBrowser' object has no attribute 'sel_check_box') created by blemire@…
[…]
4:02 AM Ticket #4832 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
2:29 AM Ticket #4831 (Opening MRC file: getcwd: No such file or directory) created by irina.grishkovskaya@…
[…]

Jun 27, 2021:

1:19 PM Ticket #4830 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by hchou01@…
[…]

Jun 26, 2021:

8:47 AM Ticket #4829 (multiple errors) created by chimerax-bug-report@…
[…]
7:42 AM Ticket #4828 (3kds assembly 1: index is out of bounds) created by ubaumann@…
[…]
3:50 AM Ticket #4827 (Unknown problem) created by chimerax-bug-report@…
[…]
12:54 AM Ticket #4826 (Freeze in "preset original") created by svle@…
[…]
12:27 AM Ticket #4825 (Freeze in "preset original") created by svle@…
[…]

Jun 25, 2021:

7:40 PM Ticket #4823 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() closed by Tom Goddard
nonchimerax: Crash on Mac initializing OpenGL when setting screen on a 2 screen …
5:47 PM Ticket #4824 (3-letter code lookup) created by pett
Given a ligand structure, find the PDB 3-letter name for it. Email …
4:58 PM Ticket #4822 (Nucleotides: object of type 'NoneType' has no len() closed by pett
duplicate
4:55 PM Ticket #4821 (Crash showing Rapid access at startup) closed by pett
duplicate
4:54 PM Ticket #4820 (Crash in AtomSearchTree implementation) closed by pett
can't reproduce: Could be called from hbonds, clashes, build_structure, or addh. The …
4:11 PM Ticket #4823 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() created by chimerax-bug-report@…
[…]
9:31 AM ChangeLog edited by Elaine Meng
(diff)
9:28 AM ChangeLog edited by Elaine Meng
(diff)
1:31 AM Ticket #4822 (Nucleotides: object of type 'NoneType' has no len() created by chimerax-bug-report@…
[…]

Jun 24, 2021:

9:50 PM Ticket #4821 (Crash showing Rapid access at startup) created by chimerax-bug-report@…
[…]
7:49 PM Ticket #4820 (Crash in AtomSearchTree implementation) created by chimerax-bug-report@…
[…]
7:35 PM 2021-6-24 created by Tom Goddard
7:29 PM DeveloperMeetings edited by Tom Goddard
(diff)
7:11 PM Ticket #4816 (Crash in thread under Rosetta emulation) closed by Tom Goddard
can't reproduce: No info in stack trace of crashed thread 14. Apple M1 processor. …
7:04 PM Ticket #4815 (Various OpenGL errors) closed by Tom Goddard
nonchimerax: These ChimeraX errors are caused by bugs in your system OpenGL …
5:02 PM Ticket #4819 (Crash in AddH) closed by pett
can't reproduce: If the Python stack trace is accurate, it crashed in this line: …
4:46 PM ChangeLog edited by pett
(diff)
2:25 PM Ticket #4819 (Crash in AddH) created by chimerax-bug-report@…
[…]
2:18 PM Ticket #4818 (Error in toolshed error message) closed by pett
duplicate
2:52 AM Ticket #4818 (Error in toolshed error message) created by chimerax-bug-report@…
[…]
1:26 AM Ticket #4817 (Cannot input '@' into registration form) created by louis.becquey@…
[…]
12:31 AM Ticket #4816 (Crash in thread under Rosetta emulation) created by chimerax-bug-report@…
[…]
12:00 AM Ticket #4815 (Various OpenGL errors) created by yaroslavd@…
[…]

Jun 23, 2021:

5:11 PM Ticket #4814 (Crash initially showing Rapid Access) closed by Tom Goddard
duplicate: I put a fix in for this ChimeraX crash on startup last month. It is …
1:58 PM Ticket #4814 (Crash initially showing Rapid Access) created by biswambhar.biswas@…
[…]
11:53 AM Ticket #4809 (Volume viewer logs illegal command) closed by Tom Goddard
fixed: Fixed. Thanks, definitely a bug. Seems unreasonable that the volume …
11:00 AM Ticket #4813 (Crash in garbage collection during new-object allocation) closed by pett
can't reproduce: It's been 4 months since we've had one of these. Maybe fixed by newer …
10:48 AM Ticket #4813 (Crash in garbage collection during new-object allocation) created by chimerax-bug-report@…
[…]
10:46 AM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) closed by pett
fixed: Glad you like it! Okay, made bfactor/occupancy editable, with …
10:18 AM Ticket #4810 (AddH: name 'chain' is not defined) closed by pett
fixed: Only affects structure lacking SEQRES information. Fixed in …
9:19 AM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) created by Tristan Croll
[…]
8:51 AM Ticket #4811 (angle command) closed by pett
not a bug: Hi Enrico, The 'angle' command is only available in ChimeraX 1.2 or …
8:15 AM Ticket #4811 (angle command) created by enricogandini93@…
[…]
7:31 AM Ticket #4810 (AddH: name 'chain' is not defined) created by Tristan Croll
[…]
12:29 AM Ticket #4809 (Volume viewer logs illegal command) created by Tony Schaefer
[…]

Jun 22, 2021:

6:43 PM Ticket #4808 (Add GLTF saving of textures) created by Tom Goddard
For NIH 3D model repository NIAID wants to use GLTF. Currently we …
6:36 PM 2021-6-17 edited by Tom Goddard
(diff)
4:42 PM Ticket #4806 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 6) closed by Tom Goddard
nonchimerax: Same crash as #4803. The traceback shows the crash was while dragging …
4:39 PM Ticket #4803 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 5) closed by Tom Goddard
nonchimerax: We got your previous 4 ChimeraX crash reports that were the same Apple …
4:20 PM Ticket #4804 (Map fit: 'NoneType' object has no attribute 'scene_position') closed by Tom Goddard
duplicate: Fixed 11 months ago, #3559.
12:54 PM Ticket #4720 (Graphics crash, macOS 11.3.1, Radeon Pro 555X) closed by Tom Goddard
nonchimerax: Graphics driver crash.
12:44 PM Ticket #4802 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 4) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Unfortunately Apple's graphics drivers …
12:24 PM Ticket #4807 (Saved PDB opens with bad record warning) created by goddard@…
[…] test.pdb
11:44 AM Ticket #4806 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 6) created by arvind.sharma@…
[…]
11:32 AM Ticket #4805 (ISOLDE: crash in find_clashing_atoms) created by chimerax-bug-report@…
[…]
10:58 AM Ticket #4804 (Map fit: 'NoneType' object has no attribute 'scene_position') created by chimerax-bug-report@…
[…]
10:57 AM Ticket #4803 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 5) created by arvind.sharma@…
[…]
10:17 AM Ticket #4802 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 4) created by chimerax-bug-report@…
[…]
8:31 AM Ticket #4780 (ISOLDE: possible error in MD template) closed by Tristan Croll
limitation: Response from Caillan: "Hi, thanks so much for checking the template …

Jun 21, 2021:

10:11 AM Ticket #4801 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 3) closed by Tom Goddard
nonchimerax: This is the standard Apple graphics driver crash. The Python …
9:34 AM Ticket #4799 (Error in toolshed error message) closed by pett
duplicate: Hi, Thanks for reporting this problem. ChimeraX was trying to tell …
9:31 AM Ticket #4798 (Crash reading PDB file) closed by pett
can't reproduce: Could be the non-ASCII-character crash, which was fixed post-1.2.5
9:17 AM Ticket #4795 (Toolshed using internal UI API) closed by pett
duplicate
8:12 AM Ticket #4801 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 3) created by chimerax-bug-report@…
[…]
6:29 AM Ticket #4800 (ISOLDE: item.data is a method/function, not tuple) created by chimerax-bug-report@…
[…]

Jun 19, 2021:

6:10 AM Ticket #4799 (Error in toolshed error message) created by longphysics06@…
[…]
12:59 AM Ticket #4798 (Crash reading PDB file) created by chimerax-bug-report@…
[…]

Jun 18, 2021:

9:43 PM Ticket #4797 (tether opacity visually incorrect) closed by Tom Goddard
fixed: Fixed (kind of). The problem is that the cone normal vectors get …
8:51 PM Ticket #4792 (Save gltf using instancing to reduce file size) closed by Tom Goddard
fixed: Done. By default atoms have all the sphere geometries copied instead …
6:21 PM Ticket #4797 (tether opacity visually incorrect) created by pett
When I position a tether with something behind it, if the tether shape …
5:55 PM Ticket #4796 (--usedefaults/--nousedefaults startup option does not work) created by Elaine Meng
Greg says these do the same thing as --tools and --notools even though …
2:27 PM Ticket #4795 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
12:46 PM Ticket #4791 (Map Fit: local variable 'm' referenced before assignment) closed by Tom Goddard
fixed: Fixed. User turned off overlap and correlation radio buttons in fit …
11:25 AM Dev2021-6-10 edited by pett
(diff)
11:24 AM Dev2021-6-10 edited by pett
(diff)
11:18 AM AddTracUser edited by pett
(diff)
11:03 AM Ticket #4793 (Qt crash when screen removed on Mac) closed by pett
duplicate
10:49 AM Ticket #4790 (Unknown crash) closed by pett
can't reproduce
10:33 AM Ticket #4794 (Dock Prep) created by pett
Create Dock Prep equivalent for ChimeraX
6:13 AM Ticket #4793 (Qt crash when screen removed on Mac) created by chimerax-bug-report@…
[…]
12:19 AM Ticket #4792 (Save gltf using instancing to reduce file size) created by Tom Goddard
Kristen Browne tried saving a virus capsid to gltf using open 6htx …

Jun 17, 2021:

8:38 PM Ticket #4791 (Map Fit: local variable 'm' referenced before assignment) created by chimerax-bug-report@…
[…]
7:00 PM Ticket #4790 (Unknown crash) created by chimerax-bug-report@…
[…]
6:41 PM Ticket #4788 (Failure saving .glb of instanced assembly) closed by Tom Goddard
fixed: Fixed. The GLTF save did not handle the surface correctly when the …
6:13 PM NTTData edited by Tom Goddard
(diff)
4:52 PM Ticket #4789 ("don't phone home" flag) created by philip.macmenamin@…
For scripting, a flag that prevents contacting the Toolshed at startup
4:45 PM Ticket #3643 (Don't protonate O5' for non-terminal nucleic acids) closed by pett
fixed
2:48 PM Ticket #4787 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 2) closed by Tom Goddard
nonchimerax: Graphics driver crash, macOS 10.16, AMD Radeon Pro 580X with 8GB …
2:40 PM NTTData edited by Elaine Meng
(diff)
2:30 PM NTTData edited by Elaine Meng
(diff)
2:23 PM NTTData edited by Elaine Meng
(diff)
2:21 PM NTTData edited by Elaine Meng
(diff)
2:13 PM NTTData edited by Elaine Meng
(diff)
1:52 PM Ticket #4788 (Failure saving .glb of instanced assembly) created by kristen.browne@…
[…]
1:50 PM NTTData edited by Elaine Meng
(diff)
1:26 PM NTTData edited by Elaine Meng
(diff)
12:50 PM Ticket #4787 (Graphics crash, macOS 11.4, Radeon Pro 580X, report 2) created by chimerax-bug-report@…
[…]
12:40 PM Ticket #4784 (Graphics crash, maOS 11.3, Intel Iris Plus 640) closed by Tom Goddard
nonchimerax: The Mac graphics driver crashed Graphics hardware encountered an …
10:42 AM Ticket #4786 (Toolshed using internal UI API) closed by pett
duplicate
10:41 AM Ticket #4785 (Toolshed using internal UI API) closed by pett
duplicate
10:37 AM Ticket #4782 (Modeller: 'target_name' referenced before assignment) closed by pett
fixed: Hi Bernard, Thanks for reporting this problem. There's one …
10:26 AM Ticket #4786 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
10:26 AM Ticket #4785 (Toolshed using internal UI API) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #4784 (Graphics crash, maOS 11.3, Intel Iris Plus 640) created by marharytakrylova1@…
[…]
8:57 AM Ticket #4783 (VirtualGL info) created by Tristan Croll
[…]
8:55 AM Ticket #4782 (Modeller: 'target_name' referenced before assignment) created by blemire@…
[…]
8:34 AM Ticket #4781 (Error in custom Python script) closed by pett
nonchimerax
8:29 AM Ticket #4779 (Crash reading PDB file) closed by pett
can't reproduce: A crash involving non-ASCII characters in PDB files was fixed after …
7:16 AM Ticket #4781 (Error in custom Python script) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #4780 (ISOLDE: possible error in MD template) created by caillancm@…
[…]
5:51 AM Ticket #4779 (Crash reading PDB file) created by chimerax-bug-report@…
[…]

Jun 16, 2021:

8:54 AM Ticket #4778 ('SaveModelOptionWidget' object has no attribute '_name') closed by pett
duplicate: Hi Azadeh, Thanks for reporting this problem. The issue is that you …
4:27 AM Ticket #4778 ('SaveModelOptionWidget' object has no attribute '_name') created by ash@…
[…]
3:07 AM Ticket #4777 (Crash in combine_sym_atoms) created by d301108007@…
[…]
Note: See TracTimeline for information about the timeline view.