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#4904 closed defect (can't reproduce)

Unknown crash

Reported by:	chimerax-bug-report@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Core	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.3.dev202107140317 (2021-07-14 03:17:23 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x00001754 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\threading.py", line 306 in wait
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\threading.py", line 558 in wait
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\threading.py", line 1252 in run
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\threading.py", line 932 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\threading.py", line 890 in _bootstrap

Current thread 0x00005910 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\site-packages\ChimeraX_main.py", line 880 in init
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\site-packages\ChimeraX_main.py", line 1029 in 
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202107140317\bin\lib\runpy.py", line 194 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3.dev202107140317 (2021-07-14)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\aleme\Downloads\2ha4.pdb format pdb

2ha4.pdb title:  
Crystal structure of mutant S203A of mouse acetylcholinesterase complexed with
acetylcholine [more info...]  
  
Chain information for 2ha4.pdb #1  
---  
Chain | Description  
A B | ACHE  
  
Non-standard residues in 2ha4.pdb #1  
---  
ACH — acetylcholine  
ACT — acetate ion  
P6G — hexaethylene glycol (polyethylene glycol PEG400)  
  

> select ::name="ACH"

40 atoms, 36 bonds, 4 residues, 1 model selected  

> hide sel atoms

> show sel atoms

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> style sel ball

Changed 40 atom styles  

> hide sel atoms

> show sel atoms

> hide sel cartoons

> select clear

> hide cartoons

> select ::name="ACH"

40 atoms, 36 bonds, 4 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> show sel atoms

> select clear

> hide cartoons

> hide atoms

> show atoms

> undo

> ui tool show "Selection Inspector"

Drag select of 379 atoms, 360 bonds  

> ui tool show "Selection Inspector"

> color =sel #1bd26d bonds

> select clear

> select ::name="ACH"

40 atoms, 36 bonds, 4 residues, 1 model selected  
Drag select of 77 atoms, 73 bonds  

> hide sel target a

> select ::name="ACH"

40 atoms, 36 bonds, 4 residues, 1 model selected  

> color sel cornflower blue

> color sel byhetero

> select clear

Drag select of 255 atoms, 241 bonds  

> select clear

Drag select of 285 atoms, 272 bonds  

> select clear

Drag select of 141 atoms, 132 bonds  

> select clear

Drag select of 138 atoms, 130 bonds  

> select up

639 atoms, 649 bonds, 88 residues, 1 model selected  

> undo

> select clear

Drag select of 138 atoms, 130 bonds  

> label sel attribute label_one_letter_code

> label sel attribute label_specifier

> select ::name="ACT"

8 atoms, 6 bonds, 2 residues, 1 model selected  

> hide sel target a

> select ::name="HOH"

421 atoms, 421 residues, 1 model selected  

> hide sel target a

> select ::name="HOH"

421 atoms, 421 residues, 1 model selected  

> select ::name="HOH"

421 atoms, 421 residues, 1 model selected  

> select ::name="P6G"

19 atoms, 18 bonds, 1 residue, 1 model selected  

> hide sel target a

Drag select of 129 atoms, 127 bonds  

> label sel attribute label_one_letter_code

> label sel attribute label_specifier

> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"

> label sel attribute label_one_letter_code

> label sel attribute label_specifier

> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"

> ui tool show "Color Actions"

> color sel forest green target acspfl

> color sel forest green target l

> undo

> color sel forest green target l

> color sel lime target l

> label height 30

> undo

> label height 1

Drag select of 156 atoms, 154 bonds  

> hide sel target a

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select up

779 atoms, 800 bonds, 99 residues, 1 model selected  

> select up

4378 atoms, 4322 bonds, 718 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select down

4378 atoms, 4322 bonds, 718 residues, 1 model selected  

> select down

779 atoms, 800 bonds, 99 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select up

779 atoms, 800 bonds, 99 residues, 1 model selected  

> select up

4378 atoms, 4322 bonds, 718 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select up

8852 atoms, 8678 bonds, 1500 residues, 1 model selected  

> select down

4378 atoms, 4322 bonds, 718 residues, 1 model selected  

> select down

779 atoms, 800 bonds, 99 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> select down

156 atoms, 154 bonds, 16 residues, 1 model selected  

> ui mousemode right "move picked models"

Drag select of 129 atoms, 127 bonds  

> select clear

> ui mousemode right label

Drag select of 129 atoms, 127 bonds  

> ui mousemode right "move markers"

> ui mousemode right "translate selected atoms"

> ui mousemode right "translate selected models"

Drag select of 129 atoms, 127 bonds  

> ui mousemode right translate

> select down

129 atoms, 127 bonds, 14 residues, 1 model selected  

> undo

> log

> ui windowfill toggle

> select clear

> hbonds reveal true

2032 hydrogen bonds found  

> undo

> hbonds sel reveal true

34 hydrogen bonds found  

> ~hbonds

> hide sel atoms

> undo

> select clear

> hide atoms

> show atoms

> color byhetero

> color bfactor

8852 atoms, 1500 residues, atom bfactor range 16 to 96.1  

> undo

> color bynucleotide

> ~hbonds

> undo

> select clear

> show cartoons

> hide cartoons

> hide atoms

> show atoms

> select ::name="ACH"

40 atoms, 36 bonds, 4 residues, 1 model selected  

> volume appearance chest

No volumes specified  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel stick

Changed 40 atom styles  

> style sel sphere

Changed 40 atom styles  

> style sel ball

Changed 40 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel stick

Changed 40 atom styles  

> style sel sphere

Changed 40 atom styles  

> style sel ball

Changed 40 atom styles  

> undo

> select clear

> color byhetero

> set bgColor white

> set bgColor black

> lighting simple

> lighting soft

> lighting full

> lighting soft

> lighting simple

> select /A/B

8852 atoms, 8678 bonds, 2 pseudobonds, 1500 residues, 2 models selected  

> undo

> open C:\Users\aleme\Downloads\2ha4.pdb format pdb

2ha4.pdb title:  
Crystal structure of mutant S203A of mouse acetylcholinesterase complexed with
acetylcholine [more info...]  
  
Chain information for 2ha4.pdb #2  
---  
Chain | Description  
A B | ACHE  
  
Non-standard residues in 2ha4.pdb #2  
---  
ACH — acetylcholine  
ACT — acetate ion  
P6G — hexaethylene glycol (polyethylene glycol PEG400)  
  

> undo

> redo

> preset cartoons/nucleotides ribbons/slabs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> preset "initial styles" "original look"

Preset implemented in Python; no expansion to individual ChimeraX commands
available.  

> hide cartoons

> style ball

Changed 17704 atom styles  

> select ::name="ACH"

80 atoms, 72 bonds, 8 residues, 2 models selected  

> color sel cornflower blue

> color sel byhetero

> style sel stick

Changed 80 atom styles  

> style sel stick

Changed 80 atom styles  

> style sel ball

Changed 80 atom styles  

> select clear

> hide (protein|nucleic) target a

> cartoon hide

> show ((protein&@ca)|(nucleic&@p)) target ab

> undo

> select ::name="ACT"

16 atoms, 12 bonds, 4 residues, 2 models selected  

> hide sel target a

> select ::name="HOH"

842 atoms, 842 residues, 2 models selected  

> hide sel target a

> select ::name="P6G"

38 atoms, 36 bonds, 2 residues, 2 models selected  

> hide sel target a

Drag select of 426 atoms, 418 bonds  

> hide sel target a

Drag select of 60 atoms, 62 bonds  

> style sel stick

Changed 60 atom styles  
Drag select of 22 atoms, 22 bonds  

> style sel stick

Changed 22 atom styles  
Drag select of 20 atoms, 24 bonds  

> style sel stick

Changed 20 atom styles  
Drag select of 12 atoms, 12 bonds  

> style sel stick

Changed 12 atom styles  
Drag select of 10 atoms, 10 bonds  

> style sel stick

Changed 10 atom styles  
Drag select of 52 atoms, 48 bonds  

> style sel stick

Changed 52 atom styles  
Drag select of 62 atoms, 66 bonds  

> style sel stick

Changed 62 atom styles  
Drag select of 32 atoms, 36 bonds  

> style sel stick

Changed 32 atom styles  
Drag select of 46 atoms, 52 bonds  

> style sel stick

Changed 46 atom styles  
Drag select of 4 atoms, 4 bonds  

> style sel stick

Changed 4 atom styles  

> style sel stick

Changed 4 atom styles  

> set bgColor black

> ui mousemode right label

> label #1/A:295

> undo

Drag select of 18 atoms, 16 bonds  

> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"

Drag select of 258 atoms, 254 bonds  

> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"

> undo

> label delete residues

Drag select of 258 atoms, 254 bonds  

> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"

> label height 1

> ui tool show "Color Actions"

> color sel lime target l


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3.dev202107140317 (2021-07-14)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 26.20.100.8141
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel
Manufacturer: Dell Inc.
Model: Inspiron 7386
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 16,944,590,848
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8565U CPU @ 1.80GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.5.30
    cftime: 1.5.0
    chardet: 4.0.0
    ChimeraX-AddCharge: 1.1.4
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AltlocExplorer: 1.0
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.26
    ChimeraX-AtomicLibrary: 3.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.3.2
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3.dev202107140317
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.4
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.4
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.2
    ChimeraX-ModelPanel: 1.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.6.1
    ChimeraX-PDB: 2.4.4
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.1
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.10.1
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.23
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.3.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.20
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 2.11.3
    jupyter-client: 6.1.12
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 1.1.1
    matplotlib: 3.4.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.2
    netCDF4: 1.5.6
    networkx: 2.5.1
    numexpr: 2.7.3
    numpy: 1.20.3
    numpydoc: 1.1.0
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.2.0
    pip: 21.1.1
    pkginfo: 1.7.0
    prompt-toolkit: 3.0.19
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.9.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.1.0
    qtconsole: 5.1.0
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.25.1
    scipy: 1.6.3
    setuptools: 57.0.0
    sfftk-rw: 0.7.0.post1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.0.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.26.6
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.2
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 4 years ago

Component:	Unassigned → Core
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Unknown crash

I don't see anything indicative in the log. Maybe you will.

comment:2 by Tom Goddard, 4 years ago

The Log makes me feel like I am right in the action! So they brought up the Color Actions tool and changed a label color and then kaboom, crash while in the event loop. There were two Python threads, one in event_loop() the other in threading wait(). What is the threading wait() thread doing? Who spawned it? I bet the crash is somehow related to that thread.

comment:3 by Tom Goddard, 4 years ago

Resolution:	→ can't reproduce
Status:	assigned → closed

See if we get more crashes using Color Actions. Not enough info in this report to deduce anything.

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