Opened 4 years ago

Closed 4 years ago

#4906 closed defect (can't reproduce)

Option SpinBox already deleted

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: UI Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.dev202102230255 (2021-02-23 02:55:35 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.dev202102230255 (2021-02-23)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

> ui tool show "DevelExtras Tool"

> open K:/kcat/cyp17/122660.pdb

Summary of feedback from opening K:/kcat/cyp17/122660.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK GENERATED BY TRJCONV  
  
Ignored bad PDB record found on line 3  
REMARK THIS IS A SIMULATION BOX  
  
122660.pdb title:  
Good ROcking Metal Altar for Chronical Sinners in water t= 24532.00000 step=
12266000 [more info...]  
  
Chain information for 122660.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in 122660.pdb #1  
---  
CHO — (CHO)  
P17 — (P17)  
  

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> lighting full

> graphics silhouettes false

> lighting shadows false

> lighting full

> lighting soft

> ui tool show "Color Actions"

> set bgColor white

> select /A:340@CHA

1 atom, 1 residue, 1 model selected  

> select up

84 atoms, 85 bonds, 1 residue, 1 model selected  

> select add /B:395@C17

85 atoms, 85 bonds, 2 residues, 1 model selected  

> select up

138 atoms, 142 bonds, 2 residues, 1 model selected  

> select add /A:69@CB

139 atoms, 142 bonds, 3 residues, 1 model selected  

> select up

157 atoms, 160 bonds, 3 residues, 1 model selected  

> hide #* target a

> show sel target ab

> select clear

> select HC

2456 atoms, 395 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /A:69@CG

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:221

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select /A:69@CA

1 atom, 1 residue, 1 model selected  

> ui tool show Rotamers

> swapaa interactive sel MET rotLib Dunbrack

/A LEU 69: phi -113.0, psi -5.4 trans  
Changed 135 bond radii  

> swapaa #1/A:69 MET criteria 2 rotLib Dunbrack

Using Dunbrack library  
122660.pdb #1/A LEU 69: phi -113.0, psi -5.4 trans  
Applying MET rotamer (chi angles: -64.0 177.9 69.6) to 122660.pdb #1/A MET 69  

> undo

Undo failed, probably because structures have been modified.  

> select clear

> color dark seagreen green target c

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> select clear

> color dark slate blue target c

> color dark violet target c

> color blue violet target c

> color burly wood target c

> color tan target c

> color burly wood target c

> color light coral target c

> color wheat target c

> color beige target c

> color white smoke target c

> color ghost white target c

> color black target c

> color dark green target c

> color lavender blush target c

> color bisque target c

> color navajo white target c

> color peach puff target c

> color pink target c

> select /A:340@FE

1 atom, 1 residue, 1 model selected  

> select up

51 atoms, 52 bonds, 1 residue, 1 model selected  

> color sel magenta target ac

> color sel rebecca purple target ac

> color sel dark slate blue target ac

> color sel dark slate blue target ac

> color sel slate blue target ac

> color sel light coral target ac

> color sel violet target ac

> color sel khaki target ac

> color sel pale goldenrod target ac

> color sel plum target ac

> color sel forest green target ac

> color sel medium seagreen green target ac

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color sel sea green target ac

> color sel sea green target ac

> color sel sea green target ac

> color sel sea green target ac

> color sel chartreuse target ac

> color sel dark cyan target ac

> color sel sea green target ac

> color sel medium seagreen green target ac

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color sel medium seagreen green target ac

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color sel forest green target ac

> color sel green target ac

> color sel fire brick target ac

> color sel dark red target ac

> color sel crimson target ac

> color sel maroon target ac

> color sel dark red target ac

> color sel crimson target ac

> color sel saddle brown target ac

> color sel indian red target ac

> color sel maroon target ac

> color sel fire brick target ac

> color sel crimson target ac

> color sel brown target ac

> color sel saddle brown target ac

> color sel indian red target ac

> color sel byhetero

> select /B:395@C8

1 atom, 1 residue, 1 model selected  

> select up

25 atoms, 28 bonds, 1 residue, 1 model selected  

> color sel goldenrod target ac

> color sel gold target ac

> color sel spring green target ac

> color sel medium spring green target ac

> color sel medium aquamarine target ac

> select /A:69@CG

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color sel gray target ac

> color sel byhetero

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select clear

> color byhetero

> lighting full

> lighting full

> lighting soft

> lighting simple

> lighting soft

> set bgColor white

> set bgColor gray

> set bgColor black

> set bgColor white

> view

> graphics silhouettes true

> graphics silhouettes false

> lighting flat

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> graphics silhouettes false

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting flat

> lighting flat

> graphics silhouettes false

> lighting simple

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting full

> graphics silhouettes true

> graphics silhouettes false

> lighting full

> lighting soft

> select /A:340@O1

1 atom, 1 residue, 1 model selected  

> select add /B:395@C13

2 atoms, 2 residues, 1 model selected  

> distance /A:340@O1 /B:395@C13

Distance between /A CHO 340 O1 and /B P17 395 C13: 3.5079Å  

> select /A:69@SD

1 atom, 1 residue, 1 model selected  

> select add /B:395@C13

2 atoms, 2 residues, 1 model selected  

> distance /A:69@SD /B:395@C13

Distance between /A MET 69 SD and /B P17 395 C13: 4.8810Å  

> ui tool show Distances

> distance style radius 0.11

> distance style radius 0.11

> distance style radius 0.1

> distance style radius 0.1

> distance style radius 0.09

> distance style radius 0.09

> distance style radius 0.08

> distance style radius 0.08

> distance style decimalPlaces 3

> distance style decimalPlaces 3

> distance style decimalPlaces 2

> distance style decimalPlaces 2

> distance style dashes 9

> distance style dashes 9

> distance style dashes 10

> distance style dashes 10

> distance style dashes 11

> distance style dashes 11

> distance style dashes 12

> distance style dashes 12

> distance style dashes 13

> distance style dashes 13

> distance style radius 0.09

> distance style radius 0.09

> distance style radius 0.1

> distance style radius 0.1

> distance style radius 0.11

> distance style radius 0.11

> distance style radius 0.12

> distance style radius 0.12

> distance style radius 0.13

> distance style radius 0.13

> distance style radius 0.14

> distance style radius 0.14

> distance style radius 0.15

> distance style radius 0.15

> distance style radius 0.16

> distance style radius 0.16

> distance style radius 0.17

> distance style radius 0.17

> distance style radius 0.18

> distance style radius 0.18

> distance style radius 0.19

> distance style radius 0.19

> distance style radius 0.2

> distance style radius 0.2

> distance style radius 0.19

> distance style radius 0.19

> distance style radius 0.18

> distance style radius 0.18

> distance style radius 0.17

> distance style radius 0.17

> distance style radius 0.16

> distance style radius 0.16

> distance style radius 0.15

> distance style radius 0.15

> distance style radius 0.14

> distance style radius 0.14

> distance style radius 0.13

> distance style radius 0.13

> distance style radius 0.12

> distance style radius 0.12

> distance style radius 0.11

> distance style radius 0.11

> distance style radius 0.1

> distance style radius 0.1

> distance style radius 0.09

> distance style radius 0.09

> distance style radius 0.08

> distance style radius 0.08

> distance style radius 0.07

> distance style radius 0.07

> distance style radius 0.06

> distance style radius 0.06

> distance style radius 0.05

> distance style radius 0.05

> distance style radius 0.04

> distance style radius 0.04

> distance style radius 0.03

> distance style radius 0.03

> distance style radius 0.02

> distance style radius 0.02

> distance style radius 0.03

> distance style radius 0.03

> distance style radius 0.04

> distance style radius 0.04

> distance style dashes 12

> distance style dashes 12

> distance style dashes 11

> distance style dashes 11

> distance style dashes 10

> distance style dashes 10

> distance style dashes 9

> distance style dashes 9

> distance style dashes 8

> distance style dashes 8

> distance style dashes 7

> distance style dashes 7

> distance style dashes 6

> distance style dashes 6

> distance style dashes 5

> distance style dashes 5

> distance style dashes 4

> distance style dashes 4

> distance style dashes 3

> distance style dashes 3

> distance style dashes 2

> distance style dashes 2

> distance style dashes 1

> distance style dashes 1

> distance style dashes 2

> distance style dashes 2

> distance style dashes 3

> distance style dashes 3

> distance style dashes 4

> distance style dashes 4

> distance style dashes 5

> distance style dashes 5

> ~distance /A:340@O1 /B:395@C13

> select clear

> select /B:395@C17

1 atom, 1 residue, 1 model selected  

> select add /A:69@SD

2 atoms, 2 residues, 1 model selected  

> distance /B:395@C17 /A:69@SD

Distance between /B P17 395 C17 and /A MET 69 SD: 4.68Å  

> ui tool show Distances

> ~distance /A:69@SD /B:395@C13

> distance style dashes 4

> distance style dashes 4

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style dashes 3

> distance style dashes 3

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.03

> distance style radius 0.03

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.02

> distance style radius 0.02

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.03

> distance style radius 0.03

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.04

> distance style radius 0.04

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.05

> distance style radius 0.05

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.06

> distance style radius 0.06

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.07

> distance style radius 0.07

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.06

> distance style radius 0.06

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style radius 0.05

> distance style radius 0.05

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 390, in set_value  
self._float_widget.setSpecialValueText("")  
  
See log for complete Python traceback.  
  

> distance style dashes 4

> distance style dashes 4

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 50, in <lambda>  
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
Error processing trigger "setting changed":  
RuntimeError: wrapped C/C++ object of type NoScrollSpinBox has been deleted  
  
File "C:\Program Files\ChimeraX 1.2.dev202102230255\bin\lib\site-
packages\chimerax\ui\options\options.py", line 524, in set_value  
self._spin_box.setSpecialValueText("")  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 461.72
OpenGL renderer: GeForce GTX 1060/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: ASUSTeK COMPUTER INC.
Model: TUF GAMING FX504GM_FX80GM
OS: Microsoft Windows 10 Home Single Language (Build 19043)
Memory: 17,027,776,512
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz
OSLanguage: en-US
Locale: ('en_IN', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.4.1
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0
    ChimeraX-AddH: 2.1.4
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.11.1
    ChimeraX-AtomicLibrary: 2.0
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.dev202102230255
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-DevelExtras: 0.4.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.1
    ChimeraX-uniprot: 2.1
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 1.1.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.2
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.16
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.2.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 4 years ago

Component: Unassigned → UI
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Option SpinBox already deleted

comment:2 by Eric Pettersen, 4 years ago

Resolution: → can't reproduce
Status: accepted → closed

Okay, I was able to reproduce it once, but now I can't. This should not happen if the Option's del is called, and in all my tests it is.

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