![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 13, 2021:
- 11:06 PM Ticket #5780 (Error in newer-versions dialog) created by
- […]
- 4:42 PM Ticket #5779 (AlphaFold search blast results: TypeError: not enough arguments for ...) closed by
- fixed: Should be fixed by …
- 4:16 PM Ticket #5779 (AlphaFold search blast results: TypeError: not enough arguments for ...) created by
- […]
- 4:05 PM Ticket #5764 (Crash in Rings iteration) closed by
- fixed: Had Rings collection immediately create its component rings. Not 100% …
- 3:55 PM Ticket #5777 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) closed by
- nonchimerax: OpenGL reports out of memory trying to load just 3 Mbytes into an …
- 3:00 PM Ticket #5774 (AlphaFold blast job: Internal Server Error) closed by
- fixed: Up and running again!
- 2:38 PM Ticket #5776 (Crash processing event) closed by
- can't reproduce: This ChimeraX crash was caused by the Qt window toolkit calling a …
- 2:35 PM Ticket #5775 (Crash during or after saving session) closed by
- duplicate: Same report as of #5776. Identical crash report (same exact time...). …
- 2:26 PM Ticket #5778 (Save session: DLL load failed while importing _imaging: Insufficient ...) created by
- […]
- 1:05 PM Ticket #5777 (QOpenGLFramebufferObject: Framebuffer incomplete attachment) created by
- […]
- 1:02 PM Ticket #5776 (Crash processing event) created by
- […]
- 12:59 PM Ticket #5775 (Crash during or after saving session) created by
- […]
- 12:17 PM Ticket #5774 (AlphaFold blast job: Internal Server Error) created by
- […]
- 11:28 AM Ticket #5767 (Crash creating QWebEngineProfile) closed by
- duplicate: Crashed at startup creating file history html widget in …
- 11:15 AM Ticket #5771 (Crash, possibly while saving image) closed by
- can't reproduce: Crashed getting an atomic attribute Thread 0x00002fd4 (most recent …
- 11:07 AM Ticket #5773 (Cannot restore session: _pickle.UnpicklingError: invalid load key) closed by
- duplicate
- 11:06 AM Ticket #5765 (glViewport: invalid operation) closed by
- can't reproduce: Appears to be an error on startup. Status line got an expose event, …
- 11:03 AM Ticket #5772 (Crash after running MatchMaker) closed by
- can't reproduce
- 10:52 AM Ticket #5770 (Crash in numpy, probably .any()) closed by
- can't reproduce
- 10:49 AM Ticket #5769 (Session code trying to take len() of 'SurfaceUpdaters') closed by
- duplicate: Hi Kuen, Thanks for reporting this problem. It was fixed about 6 …
- 10:44 AM Ticket #5768 (Fatal Qt error during app initialization) closed by
- duplicate: duplicate of #5749
- 9:48 AM Ticket #5763 (Useless Windows error reports) closed by
- can't reproduce
- 7:43 AM Ticket #5773 (Cannot restore session: _pickle.UnpicklingError: invalid load key) created by
- […]
- 7:04 AM Ticket #5772 (Crash after running MatchMaker) created by
- […]
- 1:01 AM Ticket #5771 (Crash, possibly while saving image) created by
- […]
- 12:06 AM Ticket #5770 (Crash in numpy, probably .any()) created by
- […]
Dec 12, 2021:
- 10:47 PM Ticket #5769 (Session code trying to take len() of 'SurfaceUpdaters') created by
- […]
- 10:10 PM Ticket #5768 (Fatal Qt error during app initialization) created by
- […]
- 9:30 PM Ticket #5767 (Crash creating QWebEngineProfile) created by
- […]
- 4:16 PM Ticket #5766 ("help define selector": 'NoneType' object has no attribute 'split') created by
- […]
- 2:27 PM Ticket #5765 (glViewport: invalid operation) created by
- […]
- 11:12 AM Ticket #5764 (Crash in Rings iteration) created by
- […]
Dec 11, 2021:
- 2:45 PM Ticket #5763 (Useless Windows error reports) created by
- […]
- 7:42 AM Ticket #5762 (Improve/remove "discussions" link) created by
- […]
- 12:34 AM Ticket #5761 (Crash showing Rapid Access at startup) created by
- […]
Dec 10, 2021:
- 12:41 PM Ticket #5669 (ISOLDE: restrain torsions: Each residue selection must be from a ...) closed by
- fixed: The error is pretty much what it says it is: the user should be …
- 12:35 PM Ticket #5760 (Crash rotating structure) closed by
- can't reproduce: Possibly a graphics driver crash. Could they have opened a PDB file …
- 12:32 PM Ticket #5672 (ISOLDE: 'NoneType' object has no attribute 'is_difference_map') closed by
- fixed
- 12:32 PM Ticket #5707 (OpenMM: Error compiling program: nvrtc: error: invalid value for ...) closed by
- fixed: If you install ChimeraX 1.3 and install ISOLDE 1.3 into that, this …
- 10:25 AM Ticket #5760 (Crash rotating structure) created by
- […]
- 9:34 AM Ticket #5754 (Crash after close session) closed by
- can't reproduce
- 9:31 AM Ticket #5753 (Toolshed using internal UI API) closed by
- duplicate: Hi Ken, That error didn't actually cause any harm, so you can ignore. …
- 9:25 AM Ticket #5143 (Avoid recalculating idatm_types for entire model after changes?) reopened by
- I have further ideas for speed up (namely, make the dirty bit …
Dec 9, 2021:
- 11:22 PM Ticket #5759 (Improve --script option documentation) created by
- […]
- 10:30 PM Ticket #5758 (Add ability to publish session file to NIH 3D database) created by
- Could be useful to upload not just GLTF, but also ChimeraX session …
- 10:26 PM Ticket #5757 (Make presets useful for 3D printing atomic models) created by
- Phil Cruz has about 10 presets that help set dimensions and colors for …
- 10:23 PM Ticket #5756 (Make size command able to change atom radius by adding some amount) created by
- Phil Cruz wants this for helping make suitable atomic model displays …
- 7:38 PM Ticket #5755 (Make AlphaFold search use latest version of AlphaFold database) created by
- The AlphaFold database just updated from version 1 to version 2 with …
- 6:58 PM Ticket #5754 (Crash after close session) created by
- […]
- 5:58 PM Ticket #5143 (Avoid recalculating idatm_types for entire model after changes?) closed by
- fixed: Well, I committed changes and tweaks that make IDATM computation take …
- 3:35 PM 2021-12-9 edited by
- (diff)
- 3:14 PM Ticket #5753 (Toolshed using internal UI API) created by
- […]
- 1:19 PM NTTData edited by
- (diff)
- 1:04 PM Ticket #5752 (ISOLDE downloaded but not installed) created by
- […]
- 1:02 PM NTTData edited by
- (diff)
- 12:31 PM NTTData edited by
- (diff)
- 12:26 PM NTTData edited by
- (diff)
- 11:05 AM Ticket #5747 (ISOLDE vs. 1.4) closed by
- fixed
- 10:54 AM Ticket #5750 (Out of space writing file history) closed by
- not a bug: The file history is limited to 200 entries and the thumbnail images …
- 10:51 AM 2021-12-9 edited by
- (diff)
- 10:43 AM 2021-12-9 edited by
- (diff)
- 9:48 AM Ticket #5751 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 9:43 AM Ticket #5749 (Fatal Qt error during app initialization) closed by
- can't reproduce
- 6:51 AM Ticket #5751 (Crash showing Rapid Access at startup) created by
- […]
- 6:30 AM Ticket #5750 (Out of space writing file history) created by
- […]
- 6:06 AM Ticket #5749 (Fatal Qt error during app initialization) created by
- […]
- 12:22 AM Ticket #5748 (Crash calculating contour surface) created by
- […]
Dec 8, 2021:
- 2:48 PM Milestone 1.3 completed
- == Approximate Schedule == * September 15 - November 1, 2021: First …
- 1:34 PM Ticket #5747 (ISOLDE vs. 1.4) created by
- […]
- 10:59 AM Ticket #5746 (OpenMMException: Error compiling program: nvrtc: error: failed to open ...) created by
- The following bug report has been submitted: Platform: …
- 10:53 AM Ticket #5745 (OpenMM: Error compiling program: nvrtc: error: failed to open ...) created by
- The following bug report has been submitted: Platform: …
Dec 7, 2021:
- 5:34 PM Ticket #5744 (Interfaces: 'ContactPlot' object has no attribute '_handler') closed by
- duplicate: Hi Jonathan, The earlier error with the 'interfaces' command …
- 4:20 PM Ticket #5734 (Log and AlphaFold window are blank, plus various deprecation warnings) closed by
- limitation: So I was able to duplicate this running Fedora 35 in a virtual …
- 3:54 PM Ticket #5744 (Interfaces: 'ContactPlot' object has no attribute '_handler') created by
- […]
- 12:48 PM Ticket #5743 (Quick Start Guide: Linux Python missing bz2 module) created by
- […]
- 12:15 PM ChangeLog edited by
- (diff)
- 10:34 AM Ticket #5741 (Can't restore session due to attr-registration conflict) closed by
- fixed: I see. Default-value support is still present in 1.3, but you …
- 10:26 AM 2021-12-9 edited by
- (diff)
- 10:26 AM 2021-12-9 edited by
- (diff)
- 10:25 AM 2021-12-9 edited by
- (diff)
- 10:25 AM 2021-12-9 edited by
- (diff)
- 10:25 AM 2021-12-9 created by
- 10:23 AM DeveloperMeetings edited by
- (diff)
- 9:44 AM Ticket #5742 (Crash calling QGuiApplication::mouseButtons()) closed by
- can't reproduce: Thread 0x00001204 (most recent call first): File "C:\Program …
- 9:13 AM Ticket #5739 (Crash reading mmCIF file) closed by
- can't reproduce
- 3:13 AM Ticket #5742 (Crash calling QGuiApplication::mouseButtons()) created by
- […]
- 1:38 AM Ticket #5741 (Can't restore session due to attr-registration conflict) created by
- […]
Dec 6, 2021:
- 11:23 PM Ticket #5740 (please add aPNG format for movie output) closed by
- fixed: Well, this was easier than I thought. So it will be in the next day's …
- 9:36 PM Ticket #5740 (please add aPNG format for movie output) created by
- On 12/6/2021 8:21 PM, Frank Irby via Chimera-users wrote: > I produce …
- 5:02 PM Ticket #5739 (Crash reading mmCIF file) created by
- […]
- 4:49 PM ChangeLog edited by
- (diff)
- 1:54 PM Ticket #5738 (No space left on device recording movie) closed by
- nonchimerax: User ran out of disk space saving images for a movie. Looks like a …
- 1:53 PM Ticket #5736 (Operation timed out reading volume) closed by
- nonchimerax: Was trying to read a few planes of data from an MRC file and the disk …
- 11:59 AM Ticket #5737 (Crash in swap_buffers) closed by
- can't reproduce
- 11:55 AM Ticket #5735 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) closed by
- duplicate
- 11:47 AM Ticket #5733 (Crash closing session) closed by
- can't reproduce: Earlier on, there was a "QMainWindowLayout::tabPosition called with …
- 6:33 AM Ticket #5738 (No space left on device recording movie) created by
- […]
- 5:59 AM Ticket #5737 (Crash in swap_buffers) created by
- […]
- 5:15 AM Ticket #5736 (Operation timed out reading volume) created by
- […]
- 1:25 AM Ticket #5735 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) created by
- […]
Dec 5, 2021:
- 9:06 PM Ticket #5734 (Log and AlphaFold window are blank, plus various deprecation warnings) created by
- […] Screenshot from 2021-12-06 00-03-55.png
- 6:44 PM Ticket #5733 (Crash closing session) created by
- […]
Dec 3, 2021:
- 11:12 PM Ticket #5723 (Crash during webcam command registration import QtMultimedia) closed by
- nonchimerax: Qt bug.
- 8:11 PM Ticket #5732 (pseudobond→ribbon regression) closed by
- fixed: Fixed in 1.3 and 1.4. The fix two weeks ago (#5536) to correct …
- 5:57 PM Ticket #5695 (Crash removing dock widget from main window) closed by
- can't reproduce
- 4:46 PM Ticket #5728 (morph rate/ramp syntax) closed by
- not a bug: Yes, you just need to put "ramp up" in quotation marks. Any option …
- 4:18 PM Ticket #5732 (pseudobond→ribbon regression) created by
- In the release candidate and daily build there are gaps between the …
- 2:14 PM Ticket #5718 (Bond-rotation mouse mode: excess atoms) closed by
- fixed: The generated atom spec now uses '#!' if there are structure …
- 1:35 PM Ticket #5724 (charge estimation: 'Ring' object has no attribute '_c_pointer_ref') closed by
- fixed: Rings now cache C++ info at construction time. 1.4 branch only.
- 1:34 PM Ticket #5619 (Missing ANTECHAMBER library on Windows) closed by
- fixed
- 10:22 AM Ticket #5731 (Permission denied writing command history) closed by
- fixed: The code now retries 3 times instead of just once.
- 9:34 AM Ticket #5731 (Permission denied writing command history) created by
- […]
- 9:28 AM Ticket #5730 (Crash drawing Qt widgets) closed by
- can't reproduce: Old version of ChimeraX/Qt
- 9:22 AM Ticket #5727 (Crash creating Rapid Access file history) closed by
- can't reproduce
- 9:17 AM Ticket #5726 (Crash after opening XYZ structure (SeqCrow)) closed by
- can't reproduce
- 8:22 AM Ticket #5730 (Crash drawing Qt widgets) created by
- […]
- 7:10 AM Ticket #5729 (sqm suggestions) created by
- […] TPP.mol2
- 1:31 AM Ticket #5728 (morph rate/ramp syntax) created by
- […]
- 12:34 AM Ticket #5727 (Crash creating Rapid Access file history) created by
- […]
Dec 2, 2021:
- 9:16 PM Ticket #5726 (Crash after opening XYZ structure (SeqCrow)) created by
- […]
- 4:13 PM 2021-12-2 edited by
- (diff)
- 4:12 PM Dev2021-12-2 edited by
- (diff)
- 4:06 PM Ticket #5725 (Windows crash reporting does not give full Python traceback) created by
- Investigate if Python faulthandler is supposed to give full Python …
- 3:54 PM DeveloperMeetings edited by
- (diff)
- 3:53 PM 2021-12-2 edited by
- (diff)
- 12:53 PM Dev2021-12-2 created by
- 12:53 PM DeveloperMeetings edited by
- (diff)
- 12:26 PM Ticket #5724 (charge estimation: 'Ring' object has no attribute '_c_pointer_ref') created by
- The following bug report has been submitted: Platform: …
- 11:01 AM 2021-12-2 edited by
- (diff)
- 11:00 AM 2021-12-2 edited by
- (diff)
- 10:15 AM Ticket #5712 (Crash reloading available tool info) closed by
- can't reproduce: My guess is that the user terminated ChimeraX due to network problems.
- 10:12 AM Ticket #5723 (Crash during webcam command registration import QtMultimedia) created by
- […]
- 9:32 AM Ticket #5722 (Show Distances tool: wrapped C/C++ object of type QTabWidget has been ...) closed by
- duplicate: Hi Kate, Thanks for reporting this problem. It was fixed about 4 …
- 9:31 AM Ticket #5722 (Show Distances tool: wrapped C/C++ object of type QTabWidget has been ...) created by
- The following bug report has been submitted: Platform: …
- 9:22 AM Ticket #5721 (Crash saving session while getting vector property) closed by
- can't reproduce
- 9:18 AM Ticket #5720 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 6:19 AM Ticket #5721 (Crash saving session while getting vector property) created by
- […]
- 3:39 AM Ticket #5619 (Missing ANTECHAMBER library on Windows) reopened by
- In build 1.3rc202112010754 those last three libraries (cygintl-8.dll, …
- 1:56 AM Ticket #5720 (Crash showing Rapid Access at startup) created by
- […]
Dec 1, 2021:
- 9:33 PM Ticket #5691 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- fixed: Duplicate of #5579 Thank you for this bug report. I believe the …
- 9:32 PM Ticket #5559 (Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted) closed by
- fixed: I believe that one of …
- 5:18 PM Ticket #5719 (Crash saving PDB of AlphaFold model (also: ErrorPalooza)) closed by
- can't reproduce
- 4:49 PM Ticket #5717 (Qt crash drawing a window) closed by
- can't reproduce: Old version
- 4:33 PM Ticket #5719 (Crash saving PDB of AlphaFold model (also: ErrorPalooza)) created by
- […]
- 2:21 PM Ticket #5718 (Bond-rotation mouse mode: excess atoms) created by
- […]
- 12:46 PM Ticket #5714 (Crash showing AlphaFold model) closed by
- can't reproduce: I tried exactly the same steps on the same uniprot sequence using the …
- 11:37 AM Ticket #5715 (Graphics driver crash, macOS 10.15.7, GeForce GT 750M) closed by
- nonchimerax: Mac graphics driver crash. Using very old (circa 2013) GeForce GT 750 …
- 11:20 AM Ticket #5710 (Crash calculating surface) closed by
- can't reproduce: Crashed (seg fault) in the sharp edge triangle splitting C++ code used …
- 10:55 AM Ticket #5709 (Graphics driver crash, macOS 12.0.1, Intel Iris Plus Graphics 640, VM ...) closed by
- nonchimerax: Mac driver crash.
- 10:53 AM Ticket #5717 (Qt crash drawing a window) created by
- […]
- 10:26 AM Ticket #5716 (Thread crash: Namespace OBJC, Code 0x1) closed by
- can't reproduce: Possibly related to some thread-security enforcement, as per: …
- 10:11 AM Ticket #5713 ('UI' object has no attribute '_bad_drop_events') closed by
- fixed: Hi George, Thanks for reporting this problem. It is fixed in the …
- 9:59 AM Ticket #5711 (Crash in Qt event loop) closed by
- can't reproduce
- 9:04 AM Ticket #5716 (Thread crash: Namespace OBJC, Code 0x1) created by
- […]
- 8:52 AM Ticket #5715 (Graphics driver crash, macOS 10.15.7, GeForce GT 750M) created by
- […]
- 8:48 AM Ticket #5714 (Crash showing AlphaFold model) created by
- […]
- 8:00 AM Ticket #5713 ('UI' object has no attribute '_bad_drop_events') created by
- […]
- 6:29 AM Ticket #5712 (Crash reloading available tool info) created by
- […]
- 6:07 AM Ticket #5711 (Crash in Qt event loop) created by
- […]
- 1:33 AM Ticket #5710 (Crash calculating surface) created by
- […]
Nov 30, 2021:
- 10:48 PM Ticket #5709 (Graphics driver crash, macOS 12.0.1, Intel Iris Plus Graphics 640, VM ...) created by
- […]
- 1:28 PM Ticket #5708 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) closed by
- duplicate: Hi Arnold, This is the same problem that you reported about a month …
- 12:07 PM Ticket #5699 (combine: 'was_deleted' attribute missing) closed by
- fixed: Fix committed for daily build, but not impending 1.3 release
- 11:27 AM Ticket #5708 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) created by
- […]
- 11:14 AM Ticket #5706 (Crash hiding models) closed by
- can't reproduce: Crashed hiding one of two atomic models "hide #1 model" in a molecular …
- 11:02 AM Ticket #5707 (OpenMM: Error compiling program: nvrtc: error: invalid value for ...) created by
- […]
- 10:47 AM Ticket #5705 (Crash initializing AtomicStructures Collection) closed by
- can't reproduce
- 10:45 AM Ticket #5704 (Crash opening mmCIF) closed by
- can't reproduce
- 10:34 AM Ticket #5702 (Crash showing Save dialog) closed by
- can't reproduce
- 6:40 AM Ticket #5706 (Crash hiding models) created by
- […]
- 4:46 AM Ticket #5705 (Crash initializing AtomicStructures Collection) created by
- […]
- 2:36 AM Ticket #5704 (Crash opening mmCIF) created by
- […]
Nov 29, 2021:
- 6:30 PM Ticket #5702 (Crash showing Save dialog) created by
- […]
- 6:01 PM Ticket #5701 ("Remind me later" false on new version check keeps reminding) created by
- […]
- 1:51 PM Ticket #5694 (Build Structure: second chain numbered wrong) closed by
- fixed: Hi Matt, Thanks for reporting this problem. All the residues in the …
- 11:34 AM Ticket #5700 (Crash moving dock widget) closed by
- can't reproduce
- 11:04 AM Ticket #5698 (Unknown crash) closed by
- can't reproduce: Looks like an at-exit crash
- 10:55 AM Ticket #5697 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: Possibly the same reset-from-session thing, but this ticket has a lot …
- 10:55 AM Ticket #5700 (Crash moving dock widget) created by
- […]
- 10:51 AM Ticket #5696 (Coulombic crash) closed by
- can't reproduce: Hi Ma, Thanks for reporting this problem. I would recommend …
- 10:50 AM Ticket #5693 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- duplicate: Same user reporting same bug as #5692.
- 10:47 AM Ticket #5692 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- nonchimerax
- 10:16 AM Ticket #5689 (Crash calling time.perf_counter()) closed by
- can't reproduce: This ChimeraX crash happened right after the graphics was redrawn. …
- 10:05 AM Ticket #5683 (Graphics crash, macOS 10.15.7, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Apple's graphics drivers …
- 9:46 AM Ticket #5690 (Unknown crash) closed by
- can't reproduce
- 8:47 AM Ticket #5699 (combine: 'was_deleted' attribute missing) created by
- […]
- 6:13 AM Ticket #5698 (Unknown crash) created by
- […]
- 3:51 AM Ticket #5697 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 2:08 AM Ticket #5696 (Coulombic crash) created by
- […] question.txt
- 2:00 AM Ticket #5695 (Crash removing dock widget from main window) created by
- […]
Nov 28, 2021:
- 6:25 PM Ticket #5694 (Build Structure: second chain numbered wrong) created by
- […]
- 12:41 PM Ticket #5693 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 27, 2021:
- 1:32 AM Ticket #5692 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 26, 2021:
- 11:09 PM Ticket #5691 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 12:54 PM Ticket #5690 (Unknown crash) created by
- […]
- 10:18 AM Ticket #5688 (Unknown crash) closed by
- can't reproduce
- 9:55 AM Ticket #5685 (Fixing unparameterized residue: cannot unpack non-iterable ...) closed by
- fixed: This will be fixed in the coming release (which was planned for this …
- 9:52 AM Ticket #5686 (Unknown crash) closed by
- can't reproduce
- 6:47 AM Ticket #5689 (Crash calling time.perf_counter()) created by
- […]
- 3:56 AM Ticket #5688 (Unknown crash) created by
- […]
- 2:23 AM Ticket #5687 (AddH: spurious OXT) created by
- […]
Nov 25, 2021:
- 1:25 PM Ticket #5686 (Unknown crash) created by
- […]
- 1:14 PM Ticket #5685 (Fixing unparameterized residue: cannot unpack non-iterable ...) created by
- […]
- 11:49 AM Ticket #5684 (AddH protonation issue) created by
- […]
Nov 24, 2021:
- 11:22 PM Ticket #5683 (Graphics crash, macOS 10.15.7, Intel Iris Graphics 6100) created by
- […]
- 5:22 PM Ticket #5681 (Crash destroying tool) closed by
- can't reproduce
- 2:07 PM Ticket #5312 (Add a trackpad twist speed preference setting) closed by
- fixed: Ok, I added a trackpad twist speed option. Default value is 6, …
- 1:51 PM Ticket #5663 (surface vs. view) closed by
- fixed: Fixed in 1.4, not 1.3. Made "view <spec>" command exclude molecular …
- 1:19 PM Ticket #5682 (Testing stacktraces when molecular surface calculation crashes) closed by
- not a bug: This test does not explain the extra threads seen in #5679 and other …
- 1:13 PM Ticket #5682 (Testing stacktraces when molecular surface calculation crashes) created by
- […]
- 12:09 PM Ticket #5676 (Crash getting cursor position during mouse pause) closed by
- can't reproduce: This crash appears to be from a Qt window toolkit bug. from …
- 11:40 AM Ticket #5674 (Graphics driver crash, macoOS 10.14.6, Intel HD Graphics 6000) closed by
- nonchimerax: Apple graphics crash.
- 11:35 AM Ticket #5667 (ring/atom type "sticky") closed by
- fixed: Okay, have implemented #2. Will investigate #3 when time allows.
- 11:29 AM Ticket #5673 (Crash saving session) closed by
- can't reproduce: This ChimeraX crash we think happens because of a bug in deallocating …
- 11:11 AM Ticket #5681 (Crash destroying tool) created by
- […]
- 11:05 AM Ticket #5648 (Delete alt locs: access violation) closed by
- fixed
- 10:34 AM Ticket #5680 (Unknown crash after MatchMaker completion) closed by
- can't reproduce
- 10:32 AM Ticket #5679 (Unknown crash after MatchMaker completion) closed by
- can't reproduce
- 10:09 AM Ticket #5671 (ISOLDE: All atoms for zone mask must be from a single model) closed by
- fixed: This was happening in situations where Clipper was asked to mask the …
- 10:03 AM Ticket #5678 (Cannot save PDB) closed by
- duplicate
- 9:57 AM Ticket #5677 (Session restore: invalid load key, '\x04') closed by
- duplicate
- 9:53 AM Ticket #5680 (Unknown crash after MatchMaker completion) created by
- […]
- 9:43 AM Ticket #5679 (Unknown crash after MatchMaker completion) created by
- […]
- 8:51 AM Ticket #5678 (Cannot save PDB) created by
- […]
- 7:36 AM Ticket #5677 (Session restore: invalid load key, '\x04') created by
- […]
- 7:31 AM Ticket #5676 (Crash getting cursor position during mouse pause) created by
- […]
- 5:07 AM Ticket #5675 (Problems with links in Sphinx-generated help) created by
- […]
- 3:39 AM Ticket #5674 (Graphics driver crash, macoOS 10.14.6, Intel HD Graphics 6000) created by
- […]
- 3:06 AM Ticket #5673 (Crash saving session) created by
- […]
Nov 23, 2021:
- 11:10 PM 2021-12-2 created by
- 11:08 PM DeveloperMeetings edited by
- (diff)
- 10:42 PM Ticket #5672 (ISOLDE: 'NoneType' object has no attribute 'is_difference_map') created by
- […]
- 8:00 PM Ticket #5671 (ISOLDE: All atoms for zone mask must be from a single model) created by
- […]
- 3:06 PM Ticket #5670 (OpenMM: Error uploading array TabulatedFunction) created by
- The following bug report has been submitted: Platform: …
- 3:00 PM Ticket #5669 (ISOLDE: restrain torsions: Each residue selection must be from a ...) created by
- The following bug report has been submitted: Platform: …
- 2:24 PM Ticket #5668 (Antechamber failure) closed by
- duplicate: Hi Michael, Thanks for reporting this problem. It is fixed in the …
- 9:27 AM Ticket #5668 (Antechamber failure) created by
- […]
- 9:15 AM Ticket #5666 (Error executing custom "read CASTp" script) closed by
- nonchimerax: Tried to read a directory as a regular file
- 9:10 AM Ticket #5665 (Crash fetching pseudobond group's _graphics_changed attribute) closed by
- can't reproduce
- 9:04 AM Ticket #5664 (Unknown QWebEngine crash) closed by
- can't reproduce
- 6:05 AM Ticket #5667 (ring/atom type "sticky") created by
- […]
- 2:16 AM Ticket #5666 (Error executing custom "read CASTp" script) created by
- […]
- 12:18 AM Ticket #5665 (Crash fetching pseudobond group's _graphics_changed attribute) created by
- […]
Nov 22, 2021:
- 6:21 PM Ticket #5664 (Unknown QWebEngine crash) created by
- […]
- 6:14 PM Ticket #5634 (Reading hdf5 files broken on Mac) closed by
- fixed
- 4:38 PM Ticket #5663 (surface vs. view) created by
- I'm not sure you'll regard this as a bug, but if you have one residue …
- 4:23 PM Ticket #5649 (Add charge failure for J8A) closed by
- fixed: Antechamber doesn't like the fact that the atom names are not of the …
- 3:39 PM Ticket #5662 (TypeError: hk_icosahedron_lattice() missing 1 required positional ...) closed by
- fixed: Fixed in 1.3 and 1.4. Adding alpha option to hkcage command broke …
- 3:22 PM Ticket #5662 (TypeError: hk_icosahedron_lattice() missing 1 required positional ...) created by
- […]
- 3:16 PM Ticket #5656 (Failure fetching UniProt sequence/info) closed by
- nonchimerax: It's an obsolete UniProt accession ID. Reported it to the RCSB.
- 12:43 PM Ticket #5661 (Crash deleting atoms) closed by
- duplicate
- 12:39 PM Ticket #5661 (Crash deleting atoms) created by
- […]
- 12:14 PM Ticket #5653 (Dual display crash) closed by
- nonchimerax: Crash in the Qt window toolkit used by ChimeraX. We have seen many of …
- 11:41 AM Ticket #5660 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 11:28 AM Ticket #5659 (Crash deleting atoms) closed by
- duplicate
- 11:24 AM Ticket #5655 (OpenMM: Error launching CUDA compiler: Value 'sm_30' is not defined ...) closed by
- fixed: This will go away as soon as I manage to get ISOLDE 1.3 out the door. …
- 10:54 AM Ticket #5659 (Crash deleting atoms) created by
- […]
- 10:52 AM Ticket #5658 (Crash deleting atoms) closed by
- duplicate
- 10:51 AM Ticket #5657 (Crash deleting atoms) closed by
- can't reproduce: Possibly duplicate.
- 10:46 AM Ticket #5654 (Crash resolving ctypes pointer) closed by
- can't reproduce
- 10:43 AM Ticket #5652 (Crash in matplotlib) closed by
- can't reproduce
- 10:42 AM Ticket #5658 (Crash deleting atoms) created by
- […]
- 10:34 AM Ticket #5651 (Crash saving session including alphafold prediction) closed by
- can't reproduce
- 10:31 AM Ticket #5657 (Crash deleting atoms) created by
- […]
- 10:10 AM Ticket #5656 (Failure fetching UniProt sequence/info) created by
- […]
- 9:59 AM Ticket #5646 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:58 AM Ticket #5645 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:57 AM Ticket #5644 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:55 AM Ticket #5643 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:45 AM Ticket #5642 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate
- 6:35 AM Ticket #5655 (OpenMM: Error launching CUDA compiler: Value 'sm_30' is not defined ...) created by
- […]
- 6:05 AM Ticket #5654 (Crash resolving ctypes pointer) created by
- […]
- 2:40 AM Ticket #5653 (Dual display crash) created by
- […]
Nov 21, 2021:
Nov 20, 2021:
- 11:35 AM Ticket #5651 (Crash saving session including alphafold prediction) created by
- […]
- 8:43 AM Ticket #5650 (Crash starting MatchMaker) created by
- […]
- 8:36 AM Ticket #5649 (Add charge failure for J8A) created by
- […]
- 8:22 AM Ticket #5648 (Delete alt locs: access violation) created by
- […]
Nov 19, 2021:
- 11:47 PM Ticket #5646 (Long atom spec crashes ChimeraX) created by
- […]
- 11:41 PM Ticket #5645 (Long atom spec crashes ChimeraX) created by
- […]
- 11:41 PM Ticket #5644 (Long atom spec crashes ChimeraX) created by
- […]
- 10:56 PM Ticket #5643 (Long atom spec crashes ChimeraX) created by
- […]
- 2:28 PM Ticket #5642 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 1:12 PM Ticket #5641 (new bond: map::at: key not found) closed by
- can't reproduce: Would need more info to reproduce. If the atoms being bonded weren't …
- 12:18 PM Ticket #5640 (Failure calling _cpp_modified during atom deletion) closed by
- can't reproduce
- 12:16 PM Ticket #5639 (Crash opening session or getting cursor position) closed by
- can't reproduce
- 12:14 PM Ticket #5638 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 12:13 PM Ticket #5641 (new bond: map::at: key not found) created by
- […]
- 12:13 PM Ticket #5637 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 12:12 PM Ticket #5636 (Delete status bar: wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate
- 12:10 PM Ticket #5619 (Missing ANTECHAMBER library on Windows) closed by
- fixed: Yeah, I have tried a variety of things to get rid of that /tmp …
- 11:14 AM Ticket #5640 (Failure calling _cpp_modified during atom deletion) created by
- […]
- 6:04 AM Ticket #5639 (Crash opening session or getting cursor position) created by
- […]
- 1:31 AM Ticket #5638 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 1:31 AM Ticket #5637 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 12:51 AM Ticket #5636 (Delete status bar: wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Nov 18, 2021:
- 10:54 PM Ticket #5629 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: I see why the traceback does not show frames above draw_new_frame() -- …
- 3:52 PM Ticket #5635 (Windows 8: glBlitFramebuffer: invalid operation) closed by
- limitation
- 3:07 PM Ticket #5635 (Windows 8: glBlitFramebuffer: invalid operation) created by
- […]
- 2:07 PM Dev2021-11-18 created by
- 2:07 PM Dev2021-11-11 edited by
- (diff)
- 2:06 PM DeveloperMeetings edited by
- (diff)
- 1:43 PM Ticket #5625 (Crash drawing scene, Windows, possible graphics driver crash) closed by
- can't reproduce: Possibly a graphics driver crash.
- 1:34 PM Ticket #5630 (ISOLDE: various errors) closed by
- fixed: First error (`RuntimeError: edges should be a n x 2 array of unsigned …
- 1:34 PM Ticket #5624 (Blast results problem: 'NoneType' object has no attribute 'split') closed by
- fixed: Thank you for this bug report. I believe the issue was fixed in a …
- 1:12 PM Ticket #5628 (Crash checking if change-tracker changed) closed by
- can't reproduce
- 12:55 PM Ticket #5626 (Crash saving PDB file(?)) closed by
- can't reproduce: Though according to the Windows error log the problem had to do with …
- 12:49 PM Ticket #5634 (Reading hdf5 files broken on Mac) created by
- […]
- 12:38 PM 2021-11-18 edited by
- (diff)
- 12:29 PM Ticket #5623 (rotamers table: 'setVisibile') closed by
- fixed: Hi Doyeon, Thanks for reporting this problem. It was fixed about 5 …
- 11:56 AM Ticket #5633 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 11:55 AM Ticket #5632 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 7:34 AM Ticket #5631 (ISOLDE: fix unparameterized residues: Residue already deleted) created by
- […]
- 7:25 AM Ticket #5630 (ISOLDE: various errors) created by
- […]
- 6:31 AM Ticket #5629 (Attempt to retrieve context when no valid context) created by
- […]
- 6:10 AM Ticket #5628 (Crash checking if change-tracker changed) created by
- […]
- 3:00 AM Ticket #4890 (Have Updates report newer production releases) closed by
- fixed: There is a separate dialog that pops up when there are newer …
- 2:59 AM Ticket #1968 (use ajax to update ChimeraX download page) closed by
- fixed: Switched to using JSON files that are updated by the build tools.
- 2:58 AM Ticket #5500 (stop bothering me) closed by
- fixed: Incorporated suggestions from Elaine and Tom. Kept the ability to …
- 2:14 AM Ticket #5627 (Problem installing matplotlib_venn dependency) created by
- […] matplotlib_venn_installation_error.txt
Nov 17, 2021:
- 11:45 PM Ticket #5626 (Crash saving PDB file(?)) created by
- […]
- 9:22 PM Ticket #5625 (Crash drawing scene, Windows, possible graphics driver crash) created by
- […]
- 7:10 PM Ticket #5624 (Blast results problem: 'NoneType' object has no attribute 'split') created by
- […]
- 7:04 PM Ticket #5623 (rotamers table: 'setVisibile') created by
- […] Rotamer error 21-11-17 Doyeon Kim.png
- 11:56 AM Ticket #5622 (Make _nonstd_charge() public) closed by
- fixed: Okay, _nonstd_charge() has become nonstd_charge(), its "status" …
- 11:31 AM Ticket #5617 (Morph segmentSieve: empty rList) closed by
- fixed: Fixed in 1.3 and 1.4. User was going the an ATP synthase morph …
- 11:03 AM Ticket #5616 (Crash in numpy saving session after alphafold prediction returned structure) closed by
- can't reproduce: […] This numpy line is just setting a Python attribute, pure …
- 10:58 AM Ticket #5615 (Crash creating QWebEngineProfile) closed by
- nonchimerax: Seems like a Qt bug. Crashed in the Qt constructor. profile = …
- 10:35 AM Ticket #5536 (Duplicate pseudobond depiction) closed by
- fixed: Nucleotides deliberately uses Atom.effective_coord() instead of …
- 10:23 AM Ticket #5618 (Changes trigger before pb group restored(?)) closed by
- can't reproduce: >Hi Eric, > >Unfortunately I don't have that original .cxs file that …
- 9:38 AM Ticket #5621 (Fatal Qt error during app initialization) closed by
- can't reproduce: The app name given in "Path:" in the report seems F'ed up.
- 9:33 AM Ticket #5620 (Crash setting StructureSeq chain_id) closed by
- duplicate
- 8:43 AM Ticket #5622 (Make _nonstd_charge() public) created by
- […]
- 8:17 AM Ticket #5621 (Fatal Qt error during app initialization) created by
- […]
- 7:20 AM Ticket #5620 (Crash setting StructureSeq chain_id) created by
- […]
- 6:48 AM Ticket #5619 (Missing ANTECHAMBER library on Windows) created by
- […]
Nov 16, 2021:
- 11:55 PM Ticket #5618 (Changes trigger before pb group restored(?)) created by
- […]
- 11:39 PM Ticket #5611 (Segger model added to scene twice) closed by
- duplicate: This ChimeraX Segger bug was fixed over a year ago (bug #3778). You …
- 11:32 PM Ticket #5614 (Crash initialing OpenGL, probably while removing external display) closed by
- can't reproduce: Maybe a crash disconnecting an external display -- is in …
- 11:28 PM Ticket #5613 (Crash in PyOpenGL numpy allocation for setting shader matrix) closed by
- can't reproduce: Same crash as #5152 on Mac. Maybe a PyOpenGL bug. Maybe garbage …
- 11:23 PM Ticket #5612 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Drawing a status line message fails. The OpenGL make_current() does …
- 5:02 PM Ticket #5617 (Morph segmentSieve: empty rList) created by
- […]
- 5:00 PM Ticket #5616 (Crash in numpy saving session after alphafold prediction returned structure) created by
- […]
- 4:36 PM Ticket #5615 (Crash creating QWebEngineProfile) created by
- […]
- 1:29 PM ChangeLog edited by
- (diff)
- 1:29 PM ChangeLog edited by
- (diff)
- 8:50 AM Ticket #5614 (Crash initialing OpenGL, probably while removing external display) created by
- […]
- 6:57 AM Ticket #5613 (Crash in PyOpenGL numpy allocation for setting shader matrix) created by
- […]
Nov 15, 2021:
- 9:29 PM Ticket #5612 (glClear: invalid framebuffer operation) created by
- […]
- 5:25 PM ChangeLog edited by
- (diff)
- 5:23 PM Ticket #5424 (Direct model panel editing) closed by
- fixed: Implemented (double click on ID/name to initiate editing). Available …
- 2:38 PM Ticket #5611 (Segger model added to scene twice) created by
- […] RSA_seg.cxs
- 11:48 AM Ticket #5587 (Cannot reshow Distances tool) closed by
- fixed: Hi Kate, Thanks for reporting this problem. I have fixed it now and …
- 11:25 AM Ticket #5593 (Cannot "color byattr" booleans) closed by
- fixed: I have revised the error message to clarify that it needs a numeric …
- 11:15 AM Ticket #5607 (volume step 2: out of graphics memory) closed by
- limitation: Tried to show a size 2800,3750,288 map at step 2 (3 Gvoxels, float32, …
- 10:57 AM Ticket #5579 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- fixed: Should be fixed in …
- 10:56 AM Ticket #5597 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate: Duplicate of #5579
- 10:45 AM Ticket #5605 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple graphics driver crash.
- 10:42 AM Ticket #5604 (Graphics driver crash, macos 10.15.7, GeForce GT 650M) closed by
- nonchimerax: Apple graphics driver crash.
- 10:27 AM Ticket #5610 (RFE: add Z-translate mouse mode) created by
- On Nov 15, 2021, at 8:20 AM, Pranav Shah <p.shah.lab@…> wrote: …
- 10:24 AM Ticket #5609 (RFE Side View top-viewing option) created by
- From: Oliver Clarke <olibclarke@…> Subject: Re: …
- 10:17 AM Ticket #5608 (RFE improve clipping plane visibility in Side View) created by
- From: Pranav Shah via ChimeraX-users <chimerax-users@…> …
- 9:02 AM Ticket #5606 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate
- 8:44 AM Ticket #5599 (Crash setting StructureSeq chain_id) closed by
- duplicate
- 8:42 AM Ticket #5598 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 6:34 AM Ticket #5607 (volume step 2: out of graphics memory) created by
- […]
Nov 14, 2021:
- 10:51 PM Ticket #5606 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 8:52 AM Ticket #5605 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
Nov 13, 2021:
- 11:38 AM Ticket #5604 (Graphics driver crash, macos 10.15.7, GeForce GT 650M) created by
- […]
- 11:22 AM Ticket #5603 (Log a link to fetch EMDB map when opening a PDB model from cryoEM) created by
- PDB models that have an associated EMDB map list that map in the mmCIF …
- 8:08 AM Ticket #5602 (Cannot save model panel settings) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
