Crash in swap_buffers

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3rc202112010754 (2021-12-01 07:54:47 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Current thread 0x000033cc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\graphics\opengl.py", line 235 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\graphics\opengl.py", line 496 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\graphics\view.py", line 179 in draw
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\updateloop.py", line 73 in draw_new_frame
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\core\updateloop.py", line 158 in update_graphics_now
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\graphics.py", line 145 in resizeEvent
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\graphics.py", line 57 in event
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3rc202112010754\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202112010754 (2021-12-01)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> F:\Backup_Linux\Figure\Docking\Interface\Allrestraints_Interface_Wzc_Cluster1.cxs
> format session

opened ChimeraX session  

> open D:/Figure/Docking/clusterFinal_Interface2.cxs

opened ChimeraX session  

> show #!5 models

> select #5

13 pseudobonds, 2 models selected  

> show #5.1 models

> open D:/Figure/Docking/Wzc_Dimer/Interaface_ChainA-B.cxs

opened ChimeraX session  

> select /A

2026 atoms, 2061 bonds, 3 pseudobonds, 261 residues, 3 models selected  

> show sel cartoons

> select /B

2032 atoms, 2067 bonds, 3 pseudobonds, 262 residues, 3 models selected  

> show sel cartoons

> view clip false

> select :.702-720

Expected an objects specifier or a keyword  

> select :702-720

310 atoms, 320 bonds, 36 residues, 1 model selected  

> select :70-720

4002 atoms, 4070 bonds, 17 pseudobonds, 519 residues, 3 models selected  

> select :705-720

278 atoms, 288 bonds, 30 residues, 1 model selected  

> select :703-720

300 atoms, 310 bonds, 34 residues, 1 model selected  

> hide sel cartoons

> ui tool show "Side View"

> select /A:674

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add /B:457

18 atoms, 16 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select /B:469@CA

1 atom, 1 residue, 1 model selected  

> select add /A:682@CZ

2 atoms, 2 residues, 1 model selected  

> select add /A:682@CA

3 atoms, 2 residues, 1 model selected  

> select subtract /A:682

1 atom, 1 residue, 1 model selected  

> select add /A:682

12 atoms, 10 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select subtract /B:469

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select add /B:469@CB

12 atoms, 10 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select add /B:469@OG

13 atoms, 10 bonds, 2 residues, 1 model selected  

> select subtract /B:469@OG

12 atoms, 10 bonds, 2 residues, 1 model selected  

> select add /B:469@OG

13 atoms, 10 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select /B:460@CA

1 atom, 1 residue, 1 model selected  

> select add /A:685@CA

2 atoms, 2 residues, 1 model selected  

> select subtract /A:685@CA

1 atom, 1 residue, 1 model selected  

> select add /A:685@CA

2 atoms, 2 residues, 1 model selected  

> hide sel atoms

> select subtract /A:685

1 atom, 1 residue, 1 model selected  

> select add /A:685

10 atoms, 8 bonds, 2 residues, 1 model selected  

> select subtract /B:460

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add /B:460

18 atoms, 16 bonds, 2 residues, 1 model selected  

> hide sel atoms

> open D:/Figure/Docking/Wzc_Dimer/Interaface_ChainA-B.tif

Opened multi-channel map Interaface_ChainA-B.tif as #3, 3 channels, grid size
785,837,1, pixel 1, shown at step 1, values uint8  

> close session

> open D:\Figure\Docking\Wzc_Dimer\Interaface_ChainA-B.cxs format session

opened ChimeraX session  

> show #2.1 models

> select /A:684@CG

1 atom, 1 residue, 1 model selected  

> select /A:682@CA

1 atom, 1 residue, 1 model selected  

> select /A:684@C

1 atom, 1 residue, 1 model selected  

> select add /A:684@C

1 atom, 1 bond, 1 residue, 1 model selected  

> : A.682

Unknown command: segmentation : A.682  

> select /A:682

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:684

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> select up

124 atoms, 124 bonds, 15 residues, 1 model selected  

> select /A:681

6 atoms, 5 bonds, 1 residue, 1 model selected  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> select clear

> select /A:685@NE2

1 atom, 1 residue, 1 model selected  

> select add /B:467@O

2 atoms, 2 residues, 1 model selected  

> ui tool show Distances

> distance /A:685@NE2 /B:467@O

Distance between /A GLN 685 NE2 and /B TYR 467 O: 2.999Å  

> select clear

> select /A:682@NH2

1 atom, 1 residue, 1 model selected  

> select add /B:460@OE2

2 atoms, 2 residues, 1 model selected  

> distance /A:682@NH2 /B:460@OE2

Distance between /A ARG 682 NH2 and /B GLU 460 OE2: 6.585Å  
Must select one or more distances in the table  

> ~distance /A:682@NH2 /B:460@OE2

> select /A:682@NH1

1 atom, 1 residue, 1 model selected  

> select add /B:466@O

2 atoms, 2 residues, 1 model selected  

> distance /A:682@NH1 /B:466@O

Distance between /A ARG 682 NH1 and /B VAL 466 O: 3.361Å  

> select /B:460@CA

1 atom, 1 residue, 1 model selected  

> select up

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /B:460

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select up

65 atoms, 66 bonds, 8 residues, 1 model selected  

> select /B:466

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /B:465

6 atoms, 5 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select /B:467

12 atoms, 12 bonds, 1 residue, 1 model selected  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> show (sel-residues & sidechain) target ab

> select /B:519@O

1 atom, 1 residue, 1 model selected  

> select add /A:657@NH1

2 atoms, 2 residues, 1 model selected  

> distance /B:519@O /A:657@NH1

Distance between /B PHE 519 O and /A ARG 657 NH1: 7.844Å  
Must select one or more distances in the table  

> select #2.1

1 model selected  

> select /B:519@O

1 atom, 1 residue, 1 model selected  

> select /A:657@NH1

1 atom, 1 residue, 1 model selected  

> ~distance /B:511@NH1 /A:617@OG

Must select one or more distances in the table  

> select /B:519@O

1 atom, 1 residue, 1 model selected  

> select add /A:657@NH1

2 atoms, 2 residues, 1 model selected  

> distance /B:519@O /A:657@NH1

Distance already exists; modify distance properties with 'distance style'  
Must select one or more distances in the table  

> ~distance /B:519@O /A:657@NH1

> select /B:513-515

26 atoms, 25 bonds, 3 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> style sel ball

Changed 26 atom styles  

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & backbone) target ab

> open "C:/Users/Public/Desktop/ESET Banking & Payment protection.lnk"

Unrecognized file suffix '.lnk'  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3rc202112010754 (2021-12-01)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 960M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Micro-Star International Co., Ltd.
Model: GL62 6QF
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 12,725,620,736
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-6700HQ CPU @ 2.60GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.8
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3rc202112010754
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1