Opened 4 years ago
Closed 4 years ago
#5738 closed defect (nonchimerax)
No space left on device recording movie
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.8.0-25-lowlatency-x86_64-with-glibc2.14
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /home/snazarov/Downloads/cryosparc_P8_J49_volume_series/*.mrc format
> mrc vseries true
Opened map series cryosparc_P8_J49_class_00_00146_volume.mrc as #1, 5 images,
grid size 256,256,256, pixel 1.87, shown at level 0.0655, step 1, values
float32
> lighting soft
> volume #1.1 level 0.2358
> turn x 90
> turn x 90
> turn x 90
> vseries play #1 loop true
> movie record
> turn y 2 180
> wait 180
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie1.mp4
Movie saved to /home/snazarov/Desktop/movie1.mp4
> vseries stop #1
> normalize direction oscillate play #1 loop true
Unknown command: vseries normalize direction oscillate play #1 loop true
> vseries play #1 normalize direction oscillate
Invalid "normalize" argument: Expected true or false (or 1 or 0)
> vseries play #1 normalize true direction oscillate
> vseries stop #1
> vseries play #1 normalize true direction ection oscillate pauseFrames 5
Invalid "direction" argument: Should be one of 'backward', 'forward', or
'oscillate'
> vseries play #1 normalize true direction ection oscillate pauseFrames
Invalid "direction" argument: Should be one of 'backward', 'forward', or
'oscillate'
> vseries play #1 normalize true direction oscillate pauseFrames 5
> vseries stop #1
> vseries play #1 normalize true direction oscillate pauseFrames 5
> movie record
> turn y 2 180
> wait 180
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie saved to /home/snazarov/Desktop/movie2.mp4
> vseries stop #1
> vseries play #1 normalize true direction oscillate pauseFrames 1
> vseries play #1 normalize true direction oscillate pauseFrames 5
> vseries stop #1
> vseries play #1 normalize true direction oscillate maxFrameRate 20
> vseries stop #1
> vseries play #1 normalize true direction oscillate maxFrameRate 50
> vseries stop #1
> vseries play #1 normalize true direction oscillate maxFrameRate 5
> vseries stop #1
> vseries play #1 normalize true direction oscillate
> vseries stop #1
> vseries play #1 normalize true direction oscillate maxFrameRate 5
> movie encode /home/snazarov/Desktop/movie1.mp4
No frames have been recorded
> movie record
> turn y 2 180
> wait 180
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie saved to /home/snazarov/Desktop/movie2.mp4
> vseries stop #1
> vseries play #1 normalize true direction oscillate
> movie record
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie encoding failed because no images were recorded.
> movie record
> wait 300
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie saved to /home/snazarov/Desktop/movie2.mp4
> vseries stop #1
> vseries play #1 normalize true direction oscillate
> movie record
> turn y 25 300 rock 150
> wait 300
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie saved to /home/snazarov/Desktop/movie2.mp4
> vseries stop #1
> vseries play #1 normalize true loop true maxFrameRate 50
> vseries stop #1
> vseries play #1 normalize true loop true maxFrameRate 50
> movie record
> turn y 2 180
> wait 180
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie2.mp4
Movie saved to /home/snazarov/Desktop/movie2.mp4
> vseries stop #1
> vseries play #1 normalize true loop true maxFrameRate 100
> vseries stop #1
> vseries play #1 normalize true loop true maxFrameRate 5
> movie record
> turn y 2 180
> wait 180
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/chimerax/movie/movie.py", line 166, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/Image.py", line
2158, in save
save_handler(self, fp, filename)
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-
packages/PIL/PpmImagePlugin.py", line 149, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib/ucsf-chimerax/lib/python3.8/site-packages/PIL/ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie encode /home/snazarov/Desktop/movie3.mp4
Movie saved to /home/snazarov/Desktop/movie3.mp4
OpenGL version: 4.2 (Core Profile) Mesa 20.2.1
OpenGL renderer: Mesa DRI Intel(R) HD Graphics 4000 (IVB GT2)
OpenGL vendor: Intel Open Source Technology Center
Manufacturer: LENOVO
Model: 2325B12
OS: Ubuntu 20.10 groovy
Architecture: 64bit ELF
Virutal Machine: none
CPU: 4 Intel(R) Core(TM) i5-3320M CPU @ 2.60GHz
Cache Size: 3072 KB
Memory:
total used free shared buff/cache available
Mem: 15Gi 3.1Gi 3.2Gi 344Mi 9.0Gi 11Gi
Swap: 16Gi 0B 16Gi
Graphics:
00:02.0 VGA compatible controller [0300]: Intel Corporation 3rd Gen Core processor Graphics Controller [8086:0166] (rev 09)
Subsystem: Lenovo 3rd Gen Core processor Graphics Controller [17aa:21fa]
Kernel driver in use: i915
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-LinuxSupport: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
distro: 1.5.0
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.2.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → No space left on device recording movie |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
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User ran out of disk space saving images for a movie. Looks like a small movie.