Timeline



Sep 24, 2021:

5:20 PM Ticket #4853 (Generic Linux build broken) closed by Greg Couch
fixed
5:16 PM Ticket #4519 (Report hex color components) closed by Greg Couch
fixed: "color show" now gives the hex representation as well.
12:52 PM Ticket #5275 (Crash initializing context during status bar destroy) closed by Tom Goddard
duplicate: Duplicate of #5273. Supposedly fixed in daily builds many months ago.
12:47 PM Ticket #5286 (marker connected command: ValueError: shapes (0,) and (3,3) not aligned) closed by Tom Goddard
duplicate: This ChimeraX error is from using the "marker connected" command when …
11:58 AM Ticket #5287 (Blast NR search omits the sequence hits) created by Elaine Meng
Blast NR search with identical query and parameters gives plenty of …
10:54 AM Ticket #4991 (CA-only PDB shown as stick-dots) closed by pett
fixed: 100% fixed.
9:52 AM Ticket #5286 (marker connected command: ValueError: shapes (0,) and (3,3) not aligned) created by brandon.scott@…
[…]
9:12 AM Ticket #5118 (ChimeraX hangs if the blastprotein module can't connect) closed by Zach Pearson
can't reproduce: Can't reproduce, but testing did uncover the need to replace a nasty …
8:49 AM Ticket #5284 (Blast: not enough values to unpack) closed by pett
duplicate: Hi Luca, Thanks for reporting this problem. It is fixed in the 1.2.5 …
8:37 AM Ticket #5281 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by pett
duplicate
8:30 AM Ticket #5280 (Unknown crash) closed by pett
can't reproduce
7:43 AM Ticket #5285 (ChimeraX hangs at startup) created by p.drougkas@…
[…] ChimeraX_Renamed.rar
6:23 AM Ticket #5284 (Blast: not enough values to unpack) created by lp212@…
[…]
3:20 AM Ticket #5283 (Error creating HTML widget profile) created by gideon@…
[…]
2:34 AM Ticket #5282 (Ramachandran plot clashes: wrapped C/C++ object of type QComboBox has ...) created by sremm@…
[…]

Sep 23, 2021:

11:08 PM Ticket #4852 (Patch of suds_jurko during linux build fails) closed by Greg Couch
fixed
10:08 PM Ticket #5258 (Session code trying to take len() of 'SurfaceUpdaters') closed by Greg Couch
fixed: Fixed by reverting session state manager API to look for subclasses of …
8:48 PM Ticket #5281 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by chimerax-bug-report@…
[…]
7:33 PM Ticket #5280 (Unknown crash) created by chimerax-bug-report@…
[…]
6:14 PM 2021-9-16 edited by Tom Goddard
(diff)
5:14 PM 2021-9-23 edited by Tom Goddard
(diff)
5:06 PM Dev2021-9-23 created by Tom Goddard
3:32 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:54 PM NTTData edited by Elaine Meng
(diff)
1:45 PM NTTData edited by Elaine Meng
(diff)
1:27 PM NTTData edited by Elaine Meng
(diff)
12:23 PM Ticket #5278 (Sequence Viewer: cannot delete structure-associated region) closed by Elaine Meng
not a bug: The problem was user error: trying to get the dashed outline to show …
11:22 AM Ticket #5265 (blast checkboxes not working) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/90e053bdb56f9050455ea3321b17c5
10:41 AM Ticket #5279 (Long running blastprotein job did not return) created by Zach Pearson
While debugging #5220 attempted to run a job against NR database …
8:39 AM Ticket #5278 (Sequence Viewer: cannot delete structure-associated region) created by Elaine Meng
If I draw a region but later (when it's no longer the active region) …
6:11 AM Ticket #5277 (ISOLDE: various dead widgets being accessed) created by sremm@…
[…]
2:33 AM Ticket #5220 (Blastprotein: List index out of range while parsing NR results) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/69bcb3ed8957507a8f1c7d74a46f32

Sep 22, 2021:

5:21 PM Ticket #4845 (Traceback parsing atom spec @@display=True) closed by pett
fixed: Fixed on 8/25
5:16 PM Ticket #4071 (Sphinx doesn't like indentation of some code comments) closed by pett
fixed
5:12 PM Ticket #5276 (Crash creating profile for first HTML widget) closed by Tom Goddard
duplicate: There are a couple previous reports of this crash. Ticket did …
4:30 PM Ticket #4894 (ResiduesArg slow with outermost ~) closed by pett
fixed: Sped up by two orders of magnitude for the common case where it's …
3:17 PM Ticket #5276 (Crash creating profile for first HTML widget) created by chimerax-bug-report@…
[…]
3:15 PM Ticket #5275 (Crash initializing context during status bar destroy) created by chimerax-bug-report@…
[…]
2:50 PM ChangeLog edited by Elaine Meng
(diff)
2:37 PM Ticket #5273 (Crash deleting a status bar on Windows) closed by Tom Goddard
fixed: Believe fixed by code that avoids creating the opengl context when …
2:30 PM Ticket #5270 (fitmap tool: local variable 'msg' referenced before assignment) closed by Tom Goddard
duplicate: Fixed Duplicate of #5269.
2:30 PM Ticket #5268 (Saving settings: No space left on device) closed by pett
nonchimerax
2:22 PM Ticket #5274 (Modeller: Number of residues in the alignment and pdb files are different) created by Elaine Meng
[…]
2:17 PM Ticket #5269 (fitmap tool: local variable 'msg' referenced before assignment) closed by Tom Goddard
fixed: Fixed. Using map fitting gui and reporting realtime average map value …
1:43 PM Ticket #5271 (AttributeError: 'FeatureBrowser' object has no attribute 'sel_check_box') closed by pett
fixed
10:51 AM Ticket #5243 (make session with pre-1.3 blast results openable) closed by Zach Pearson
fixed: Barring any new bugs, this should be fixed by …
9:29 AM Ticket #5273 (Crash deleting a status bar on Windows) created by chimerax-bug-report@…
[…]
2:33 AM Ticket #5272 (ISOLDE: All atoms for zone mask must be from a single model!) created by irisdyoung@…
[…]

Sep 21, 2021:

5:54 PM Ticket #5271 (AttributeError: 'FeatureBrowser' object has no attribute 'sel_check_box') created by Elaine Meng
[…]
5:38 PM Ticket #5270 (fitmap tool: local variable 'msg' referenced before assignment) created by chimerax-bug-report@…
[…]
5:38 PM Ticket #5269 (fitmap tool: local variable 'msg' referenced before assignment) created by chimerax-bug-report@…
[…]
4:20 PM Ticket #5262 (seq-view status bar destruction: wrapped C/C++ object of type QScreen ...) closed by Tom Goddard
duplicate: Fixed 4 months ago cleanup of status line after a screen has been …
4:13 PM Ticket #5261 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() closed by Tom Goddard
nonchimerax: The Qt window toolkit used by ChimeraX is trying to resize one of the …
4:00 PM Ticket #5260 (Save movie to desktop: access denied) closed by Tom Goddard
can't reproduce: Trying to record a movie to the desktop movie encode …
3:38 PM 2021-9-23 created by Tom Goddard
3:37 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:48 PM Ticket #5268 (Saving settings: No space left on device) created by chimerax-bug-report@…
[…]
12:30 PM Ticket #5267 (blast jobs given nonunique names) created by Elaine Meng
If I use alphafold search it always gives the name None. If I use the …
12:27 PM Ticket #5266 (blast results make window too tall for screen) created by Elaine Meng
in daily build UCSF ChimeraX version: 1.3.dev202109202344 (2021-09-20) …
12:25 PM Ticket #5265 (blast checkboxes not working) created by Elaine Meng
in daily build, UCSF ChimeraX version: 1.3.dev202109202344 …
9:06 AM Ticket #5264 (Crash processing atom spec) closed by pett
can't reproduce: Possibly a large atom spec, but impossible to tell.
6:00 AM Ticket #5264 (Crash processing atom spec) created by chimerax-bug-report@…
[…]
5:57 AM Ticket #5263 (Cannot save PDB) created by Daniel.haeussler@…
[…]
3:15 AM Ticket #5262 (seq-view status bar destruction: wrapped C/C++ object of type QScreen ...) created by chimerax-bug-report@…
[…]
3:06 AM Ticket #5261 (Crash in QOpenGLFunctions::initializeOpenGLFunctions() created by karin.wallden@…
[…]

Sep 20, 2021:

6:37 PM Ticket #5260 (Save movie to desktop: access denied) created by chimerax-bug-report@…
[…]
1:38 PM Ticket #5259 (no 'clip model') closed by pett
not a bug: Hi Lorena, The 'clip model' command was added July 27, 2020 but the …
1:20 PM Ticket #5259 (no 'clip model') created by lorena.zuzic@…
[…]
12:20 PM Ticket #5258 (Session code trying to take len() of 'SurfaceUpdaters') created by christophe.leterrier@…
[…]
11:57 AM Ticket #5257 (access violation in ctypes/numpy) closed by Tom Goddard
can't reproduce: Have seen this crash in numpy on Mac where the C++ stack trace showed …
11:50 AM Ticket #5256 (Error in toolshed error message) closed by pett
duplicate: Hi, Thanks for reporting this problem. Please upgrade to the 1.2 …
11:42 AM Ticket #5255 (unhashable type: 'Color') closed by pett
duplicate: User has updated to newest daily build.
11:41 AM Ticket #5254 ('MultiColorButton' object has no attribute 'delayed_cmd_text') closed by pett
not a bug: Problem occurs due to previous "unhashable type: 'Color'" bug.
11:37 AM Ticket #5253 (unhashable type: 'Color') closed by pett
duplicate: Hi Yen-Li, Thanks for reporting the problem. This bug was in the …
11:34 AM Ticket #5252 (Opening new session in old version) closed by pett
not a bug: Followup to #5251
11:33 AM Ticket #5251 (Opening new session in old version) closed by pett
not a bug: As per #5252, the session was saved from the daily build.
11:29 AM Ticket #5250 (Crash using 'browse' file browser) closed by pett
can't reproduce: The well-worn "wrong thread" error.
11:11 AM Ticket #5245 (Crash opening a pdb format file) closed by pett
duplicate: Probably due to a non-ASCII character in the PDB file, which is …
7:56 AM Ticket #5257 (access violation in ctypes/numpy) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #5256 (Error in toolshed error message) created by s.mukundan@…
[…]

Sep 19, 2021:

4:37 PM Ticket #5255 (unhashable type: 'Color') created by yen-li.li@…
[…]
2:41 PM Ticket #5254 ('MultiColorButton' object has no attribute 'delayed_cmd_text') created by yen-li.li@…
[…]
2:39 PM Ticket #5253 (unhashable type: 'Color') created by yen-li.li@…
[…]
2:14 AM Ticket #5252 (Opening new session in old version) created by carmen@…
[…]
2:12 AM Ticket #5251 (Opening new session in old version) created by carmen@…
[…] Ad5_mycolors.cxs

Sep 17, 2021:

9:14 PM Ticket #5250 (Crash using 'browse' file browser) created by chimerax-bug-report@…
[…]
6:11 PM Ticket #4674 (Error in session restore: unhashable type: 'dict') closed by Greg Couch
can't reproduce: I am unable to reproduce this error and we haven't seen any other …
6:03 PM Ticket #1964 (Make stacked icons more compact or allow unstacking) closed by Greg Couch
fixed: I believe the stacking issue is taken care of. When the button labels …
4:34 PM Ticket #5249 (RFE: model-restriction widget for clashes/contacts) created by goddard@…
[…]
4:30 PM Ticket #5240 (Blastprotein session restore tries to access job, which doesn't exist) closed by Zach Pearson
fixed: Should be fixed in …
4:19 PM Ticket #5124 (Crash loading OpenMM plugins) closed by Tom Goddard
can't reproduce: Reporter did not respond to request to do simple test opening a map …
4:15 PM Ticket #5248 (Out of memory trying to safe GLTF file of virus surface) closed by Tom Goddard
not a bug: Out of memory. Same user reported OpenGL out of memory error today, #5246.
4:04 PM Ticket #5237 (Windows fatal exception 0x8001010E in open file dialog, RPC_E_WRONG_THREAD) closed by Tom Goddard
duplicate: Have seen this crash report many times.
2:33 PM Ticket #5246 (OpenGL error in glBufferData opening virus PDB file) closed by Tom Goddard
can't reproduce: The OpenGL error code 1285 is out of memory. The file appears to be …
1:13 PM Ticket #5242 (Saving session gives OpenMM SyntaxWarning "is" vs "==") closed by Elaine Meng
can't reproduce: not reproducible in a couple of tries, and completely mysterious
1:01 PM Ticket #5244 (Crash in garbage collection when closing a tool) closed by Tom Goddard
can't reproduce: I don't think we have any info in this bug report that can help us …
7:59 AM Ticket #5248 (Out of memory trying to safe GLTF file of virus surface) created by chimerax-bug-report@…
[…]
1:13 AM Ticket #5196 (Blastprotein sometimes requests invalid ID from AlphaFold) closed by Zach Pearson
fixed

Sep 16, 2021:

11:55 PM Ticket #5247 (Make download and older releases pages easier to maintain) created by Greg Couch
With the changes to the download page to emphasis the download page …
11:26 PM Ticket #5210 (Session restore is unaware of BlastProteinResults) closed by Zach Pearson
fixed: Fixed the Qt bug (#5238) that was holding up closure of this ticket.
10:21 PM Ticket #5246 (OpenGL error in glBufferData opening virus PDB file) created by chimerax-bug-report@…
[…]
10:20 PM Ticket #5245 (Crash opening a pdb format file) created by chimerax-bug-report@…
[…]
9:30 PM Ticket #5238 (Restoring session with Blastresults on macOS shows Qt error) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/112f044a6875761cb18a6105858992
6:13 PM Ticket #5244 (Crash in garbage collection when closing a tool) created by cchamble@…
[…] 6zgg.pdb
5:36 PM Ticket #5243 (make session with pre-1.3 blast results openable) created by Elaine Meng
Another issue to consider is enabling new ChimeraX to load blast …
5:19 PM Ticket #5242 (Saving session gives OpenMM SyntaxWarning "is" vs "==") created by Elaine Meng
[…]
3:43 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) created by Zach Pearson
Some rows are sequence-only and do not have a corresponding PDB …
3:16 PM Ticket #5240 (Blastprotein session restore tries to access job, which doesn't exist) created by Elaine Meng
[…] blastp.cxs
3:04 PM Ticket #5239 (One-time registration) created by pett
As per 8/12/2021 group meeting notes 12 August 2021: …
2:39 PM Dev2021-9-16 edited by Tom Goddard
(diff)
1:36 PM Ticket #5238 (Restoring session with Blastresults on macOS shows Qt error) created by Zach Pearson
When restoring a Blast session: {{{<QNSWindow: 0x7fe052fd40f0; …
1:25 PM Ticket #5237 (Windows fatal exception 0x8001010E in open file dialog, RPC_E_WRONG_THREAD) created by chimerax-bug-report@…
[…]
12:16 PM 2021-9-16 edited by Tom Goddard
(diff)
11:26 AM 2021-9-16 edited by Greg Couch
(diff)
9:16 AM Ticket #5235 (Unknown crash) closed by pett
can't reproduce
9:15 AM Ticket #5234 (Unknown crash) closed by pett
can't reproduce
9:14 AM Ticket #5233 (Crash showing Open dialog) closed by pett
can't reproduce: Another instance of the RPC_E_WRONG_THREAD crash.
6:35 AM Ticket #5236 (Crash in OpenMM finding clashes) created by koval.tomas@…
[…]
6:01 AM Ticket #5235 (Unknown crash) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #5234 (Unknown crash) created by chimerax-bug-report@…
[…]
2:23 AM Ticket #5233 (Crash showing Open dialog) created by chimerax-bug-report@…
[…]

Sep 15, 2021:

11:52 PM Dev2021-9-16 edited by Tom Goddard
(diff)
10:52 PM Ticket #5137 (Toolbar appearance changed on Mac) closed by Zach Pearson
fixed: Reverted in …
5:06 PM Ticket #4501 (Easier import for MD) closed by pett
fixed: Okay added a 'slider' option, which defaults to true, to opening MD …
4:05 PM Ticket #5113 (Session depends on atomic bundle when no atomic models opened) closed by pett
fixed: Using the new include_state StateManager method allows 1.3 sessions to …
2:49 PM ChangeLog edited by Elaine Meng
(diff)
12:05 PM Ticket #5230 (Crash in glClear) closed by Tom Goddard
nonchimerax: Probable defective Radeon graphics driver on Windows.
11:58 AM Ticket #5232 (Add "interfaces select" command) closed by Tom Goddard
fixed: Done. I added the "interfaces select" command that selects residues …
11:53 AM Ticket #5232 (Add "interfaces select" command) created by matthias.vorlaender@…
Begin forwarded message: From: Vorländer,Matthias Kopano via …
11:45 AM Ticket #5229 (Crash creating QWebEngineProfile) closed by Greg Couch
limitation: Windows 7 is not supported.
11:42 AM Ticket #5231 (Qt crash during exit) closed by pett
duplicate
11:42 AM ChangeLog edited by Elaine Meng
(diff)
11:33 AM Ticket #5231 (Qt crash during exit) created by chimerax-bug-report@…
[…]
10:38 AM Ticket #4723 (Dead links in "toolshed list") closed by Greg Couch
fixed: Fixed by limiting links to bundles that are available in the toolshed.
6:00 AM Ticket #5230 (Crash in glClear) created by chimerax-bug-report@…
[…]
1:37 AM Ticket #5229 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]

Sep 14, 2021:

5:45 PM Ticket #5040 (SSL failure during registration attempt) closed by Greg Couch
can't reproduce: Unable to reproduce.
4:39 PM Ticket #5228 (Blastprotein: Visual fixes) created by Zach Pearson
Paraphrased from Elaine's email: 1) Make buttons more like other …
4:36 PM Ticket #5227 (Blastprotein: Expose uniref databases) created by Zach Pearson
We have the databases on Plato and the infrastructure in place to …
3:26 PM Ticket #5218 (surface color value on mouseover replaced by chain info in status line) closed by Tom Goddard
fixed: Fixed. Made surface value status message suppress chain description …
3:13 PM Ticket #5222 (core/state.py: Allow NamedTuples in bundle data) closed by Zach Pearson
not a bug: OK, that makes sense. The only other suggestion I'd make would be to …
1:53 PM Dev2021-9-16 created by Tom Goddard
1:50 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:49 PM 2021-9-16 created by Tom Goddard
1:49 PM 2021-9-9 edited by Tom Goddard
(diff)
1:45 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:42 PM Ticket #5225 (Qt crash during exit) closed by Tom Goddard
fixed: I put in code so the user is not asked to report Mac crashes that …
1:41 PM Ticket #5225 (Qt crash during exit) reopened by Tom Goddard
1:18 PM Ticket #5221 (Crash capturing file-history thumbnail) closed by Tom Goddard
can't reproduce: Crashed in glReadPixels() call via PyOpenGL. That routine is handed a …
11:23 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) reopened by Elaine Meng
11:03 AM Ticket #5029 (Crash opening PDB file) closed by pett
fixed: No further feedback received from user.
10:08 AM Ticket #5226 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Daniel, Thanks for reporting this problem. It has been fixed in …
9:52 AM Ticket #5226 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by Dbarrero@…
[…]
9:38 AM Ticket #5225 (Qt crash during exit) closed by pett
can't reproduce
6:59 AM Ticket #5225 (Qt crash during exit) created by chimerax-bug-report@…
[…]
5:57 AM Ticket #5224 (bond types) created by Tristan Croll
[…] grade-MNU.pdb
12:40 AM Ticket #5219 (Blast Protein ignores numbers input into dialog, uses defaults instead) closed by Zach Pearson
fixed: Should be fixed by …
12:40 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) closed by Zach Pearson
fixed: Should be fixed by …

Sep 13, 2021:

11:22 PM Ticket #5223 (Replace Opal web services) created by Greg Couch
The Opal web services use the suds_jurko pypi package from 2014. That …
11:12 PM Ticket #5222 (core/state.py: Allow NamedTuples in bundle data) created by Zach Pearson
Would be good to have some way to register NamedTuples with …
7:49 PM Ticket #5221 (Crash capturing file-history thumbnail) created by chimerax-bug-report@…
[…]
4:46 PM Ticket #5206 (Clicking "Coloring" in AlphaFold panel does not show the coloring panel) closed by Tom Goddard
nonchimerax: Does the AlphaFold coloring panel ever show? For instance if you just …
4:02 PM Ticket #5207 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by pett
fixed: The settings/options callback loop doesn't get broken quickly enough …
3:57 PM Ticket #5211 (hide_dust: local variable 'maps' referenced before assignment) closed by Tom Goddard
duplicate: Fixed 3 months ago. #4829
3:48 PM Ticket #5202 (Model draw order not consistent) closed by Tom Goddard
not a bug: I guess you are expecting models that are identical to each other and …
3:42 PM Ticket #5201 (Parse error for 'alphafold predict') closed by Tom Goddard
duplicate: This error is from pressing the AlphaFold tool Predict button without …
3:34 PM Ticket #5220 (Blastprotein: List index out of range while parsing NR results) created by Elaine Meng
[…]
3:14 PM Ticket #5219 (Blast Protein ignores numbers input into dialog, uses defaults instead) created by Elaine Meng
Clicking the "Blast" button ignores different values for maxseq and …
1:59 PM Ticket #5218 (surface color value on mouseover replaced by chain info in status line) created by Elaine Meng
There is dueling information sent to the status line. It is very hard …
12:39 PM Ticket #5217 (blast protein lists same hit multiple times) created by Elaine Meng
Isn't there some option to consolidate multiple hits to the same entry …
12:14 PM Ticket #5216 (need better parsing of BlastProtein AlphaFold results) created by Elaine Meng
Often some of the column values are blank but I believe that to be a …
10:39 AM Ticket #5215 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Michael, Thanks for reporting this problem. It is fixed in the …
10:37 AM Ticket #5214 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by pett
duplicate: Hi Luca, Thanks for reporting this problem. It is fixed in the 1.2.5 …
10:35 AM Ticket #5213 (Error using saved tool positioning) closed by pett
duplicate
10:33 AM Ticket #5212 (Crash showing Open dialog) closed by pett
can't reproduce
9:21 AM Ticket #5209 (Failure initializing graphics) closed by pett
limitation: Windows 8
9:20 AM Ticket #5208 (Failure initializing graphics) closed by pett
limitation: Windows 8
9:05 AM Ticket #5204 (Open Chimera session) closed by pett
duplicate
9:03 AM Ticket #5203 (bigalpha.py: can't set residues.numbers) closed by pett
not a bug: Hi Shujun, The bigalpha.py script uses features that are only …
8:46 AM Ticket #5195 ('ModelMenuButton' does not have a signal with the signature value_changed()) closed by pett
can't reproduce: Happened immediately after opening a session. No idea how this is …
6:45 AM Ticket #5215 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by msoniat@…
[…]
5:08 AM Ticket #5214 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by lp212@…
[…]

Sep 12, 2021:

9:01 PM Ticket #5213 (Error using saved tool positioning) created by chimerax-bug-report@…
[…]
5:32 PM Ticket #5212 (Crash showing Open dialog) created by chimerax-bug-report@…
[…]
12:33 PM Ticket #5211 (hide_dust: local variable 'maps' referenced before assignment) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #5210 (Session restore is unaware of BlastProteinResults) created by Elaine Meng
[…]

Sep 11, 2021:

9:17 PM Ticket #5209 (Failure initializing graphics) created by chimerax-bug-report@…
[…]
8:35 PM Ticket #5208 (Failure initializing graphics) created by chimerax-bug-report@…
[…]
8:10 PM Ticket #5200 (Blastprotein: List index out of range if there are no results) closed by Zach Pearson
fixed: Should be fixed by …
7:59 PM Ticket #5205 (AlphaFold cannot import BlastProtein) closed by Zach Pearson
fixed: Should be fixed in tomorrow's daily build by …
6:48 PM Ticket #5207 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by chimerax-bug-report@…
[…]

Sep 10, 2021:

11:44 PM Ticket #5193 (Already installed bundle produces traceback instead of message) closed by Greg Couch
duplicate: Duplicate of #4631. Please install ChimeraX 1.2.5.
11:43 PM Ticket #4626 (Already-installed bundle raising error) closed by Greg Couch
duplicate: Duplicate of #4631
11:42 PM Ticket #4876 (Traceback when bundle already installed) closed by Greg Couch
duplicate: Duplicate of #4631. Please install ChimeraX 1.2.5.
11:29 PM Ticket #4513 (Registration check failure) closed by Greg Couch
fixed: It looks like the preregistration file was corrupted. Please remove …
10:40 PM Ticket #4639 (bundle_builder ignoring MACOSX_DEPLOYMENT_TARGET) closed by Greg Couch
fixed: Fixed. Bundle builder now takes into account the …
10:22 PM Ticket #5206 (Clicking "Coloring" in AlphaFold panel does not show the coloring panel) created by yen-li.li@…
[…] AlphaFold_coloring.png
4:35 PM Ticket #4975 (Notification of new releases) closed by Greg Couch
fixed: Added additional toolshed settings to control how often to check. …
4:26 PM Ticket #5205 (AlphaFold cannot import BlastProtein) created by chimerax-bug-report@…
[…]
9:52 AM Ticket #5204 (Open Chimera session) created by chimerax-bug-report@…
[…]
8:46 AM Ticket #5203 (bigalpha.py: can't set residues.numbers) created by shujun.cai@…
[…]
4:08 AM Ticket #5202 (Model draw order not consistent) created by 2wswer@…
[…]

Sep 9, 2021:

11:52 PM Ticket #5201 (Parse error for 'alphafold predict') created by ogahura@…
[…]
11:06 PM Ticket #5200 (Blastprotein: List index out of range if there are no results) created by Zach Pearson
[…]
8:38 PM Ticket #5199 (Eliminate QWebEngineUrlScheme.registerScheme warning) created by Tony Schaefer
[…]
6:37 PM Ticket #5197 (Graphics crash, macOS 10.15.6, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
6:35 PM Ticket #5198 (Transparent background not transparent when selection outline shown) closed by Tom Goddard
fixed: Fixed. Offscreen rendering was making a framebuffer with no alpha …
5:43 PM Ticket #5190 (glUniformMatrix4fv: invalid operation) closed by Tom Goddard
can't reproduce: Has been reported a half dozen times, including once by me #4891. Was …
5:29 PM Ticket #5188 (Graphics crash, macOS 10.14.6, GeForce GT 750M, report 6) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
5:25 PM Ticket #5187 (Crash on exit) closed by Tom Goddard
nonchimerax: ChimeraX crashed when it was shutting down in Qt window toolkit …
5:16 PM Ticket #5186 (UniProt ID arg: can't hand empty text to next_token()) closed by Tom Goddard
fixed: Fixed. Pressed AlphaFold panel Predict button without providing a …
4:40 PM Ticket #5198 (Transparent background not transparent when selection outline shown) created by bingchun.zhao@…
[…]
4:24 PM Ticket #5197 (Graphics crash, macOS 10.15.6, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
4:21 PM Ticket #5099 (BLAST gui shows wrong database and chain when the blastprotein command ...) closed by Zach Pearson
fixed: OK, the query parameters are shown in the results window as of …
3:22 PM Ticket #5196 (Blastprotein sometimes requests invalid ID from AlphaFold) created by Zach Pearson
Screenshot attached. IDs passed to alphafold fetch are not always the …
3:19 PM Ticket #3014 (Blast Protein tool: threading) closed by Zach Pearson
fixed: As of tonight's daily build, several instances of the blastprotein …
2:11 PM Ticket #5177 (Blast results: wrapped C/C++ object of type HtmlView has been deleted) closed by Zach Pearson
fixed
12:36 PM Ticket #5195 ('ModelMenuButton' does not have a signal with the signature value_changed()) created by chimerax-bug-report@…
[…]
12:29 PM NTTData edited by Elaine Meng
(diff)
12:06 PM Ticket #5194 (Meta: Rewrite BLAST GUI in Qt) created by Zach Pearson
9:50 AM Ticket #5192 (Crash in malloc, macOS 11.5.2, ARM cpu) closed by pett
can't reproduce
9:40 AM Ticket #5191 (Crash iterating through a Collection after pressing Coulombic toolbar icon) closed by pett
can't reproduce
9:34 AM Ticket #5189 (Error in toolshed error message) closed by pett
duplicate: Hi Kartik, ChimeraX was trying to tell you that the bundle you were …
9:20 AM Ticket #5193 (Already installed bundle produces traceback instead of message) created by apadavannil@…
[…]
3:10 AM Ticket #5192 (Crash in malloc, macOS 11.5.2, ARM cpu) created by chimerax-bug-report@…
[…]

Sep 8, 2021:

9:44 PM Ticket #5191 (Crash iterating through a Collection after pressing Coulombic toolbar icon) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #5190 (glUniformMatrix4fv: invalid operation) created by chimerax-bug-report@…
[…]
4:16 PM Ticket #5189 (Error in toolshed error message) created by kmanne@…
[…]
3:02 PM Ticket #5188 (Graphics crash, macOS 10.14.6, GeForce GT 750M, report 6) created by apadavannil@…
[…]
2:35 PM Ticket #5162 (Support 2-character chain IDs in SEQRES) closed by pett
fixed: SEQRES now preserves 2-character chain IDs. I can't test whether this …
2:07 PM Ticket #5187 (Crash on exit) created by bingchun.zhao@…
[…]
1:19 PM Ticket #5186 (UniProt ID arg: can't hand empty text to next_token()) created by jonathan.sheehan@…
[…]
1:17 PM Ticket #5185 (Missing bond) closed by pett
not a bug
1:15 PM Ticket #5185 (Missing bond) created by roger.y.tam@…
The following bug report has been submitted: Platform: …
12:01 PM Ticket #5168 (self._positions is None) closed by pett
fixed: Okay, I've committed a "fix", but since I've never been able to …
11:53 AM Ticket #5182 (Crash handling AlphaFold results) closed by Tom Goddard
can't reproduce: I tried running AlphaFold prediction on Windows in ChimeraX Sep 8, …
11:35 AM Ticket #5184 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 640) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
11:31 AM Ticket #5180 (ctypes crash) closed by Tom Goddard
can't reproduce: Not much info in the traceback. Thread 36 is in QFileInfoGatherer and …
11:16 AM Ticket #5179 (modeller refine off by one?) closed by pett
fixed: Second case now also fixed.
10:54 AM Training edited by Tom Goddard
(diff)
10:16 AM Ticket #5184 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
[…]
8:52 AM Ticket #5181 (Color chooser crash on Mac dragging color swatch) closed by pett
nonchimerax
4:09 AM Ticket #5183 (Features covers image on download page for some versions of Chrome) created by sitins07@…
[…] Screenshot_2.png
2:32 AM Ticket #5182 (Crash handling AlphaFold results) created by gmszhuf@…
[…]

Sep 7, 2021:

7:46 PM Ticket #5181 (Color chooser crash on Mac dragging color swatch) created by goddard@…
[…]
5:25 PM Ticket #5173 (Trojan in distribution?) closed by Greg Couch
nonchimerax
4:32 PM Ticket #5084 (OpenMM 7.6) closed by Tom Goddard
fixed: Ok I updated OpenMM to 7.6.0 in ChimeraX using your Linux tar ball and …
2:22 PM Ticket #5134 (Blastprotein Qt GUI breaks alphafold search) closed by Zach Pearson
fixed
12:02 PM Ticket #5180 (ctypes crash) created by chimerax-bug-report@…
[…]
11:59 AM Ticket #5172 (Graphics driver crash, macOS 11.3.1, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Crashed in Apple's graphics driver Graphics hardware encountered an …
11:57 AM Ticket #5171 (Graphics driver crash, macOS 11.5.2, Intel Iris Graphics 6100) closed by Tom Goddard
nonchimerax: Crashed in Apple's graphics driver Graphics hardware encountered an …
11:38 AM Ticket #5167 (Crash computing surface cap) closed by Tom Goddard
duplicate: Duplicate of #4630. Believed fixed a few months ago but fix is not in …
11:25 AM Ticket #5163 (mmCIF UniProt mapping not robust against '?' data) closed by Tom Goddard
fixed: Fixed. Chain B of 6zzx has the uniprot author sequence range going …
11:10 AM 2021-9-9 created by Tom Goddard
11:09 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:24 AM Ticket #5178 (unhashable type: 'Color') closed by pett
fixed
9:30 AM Ticket #5175 (Unable to open file for writing PDB) closed by pett
can't reproduce
9:21 AM Ticket #5174 (Index error opening regular PDB in MD Viewer) closed by pett
limitation
9:10 AM Ticket #5170 (Crash showing system color panel) closed by pett
can't reproduce: backingScaleFactor is supposed to be 1 or 2, depending on whether it's …
9:04 AM Ticket #5169 (Qt crash during exit) closed by pett
can't reproduce
8:37 AM Ticket #5179 (modeller refine off by one?) created by Elaine Meng
commands: open 1www sequence chain /V modeller refine 1/V:1:10-16 …
7:05 AM Ticket #5178 (unhashable type: 'Color') created by chimerax-bug-report@…
[…]

Sep 6, 2021:

11:04 AM Ticket #5177 (Blast results: wrapped C/C++ object of type HtmlView has been deleted) created by chimerax-bug-report@…
[…]
10:52 AM Ticket #5176 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
6:49 AM Ticket #5175 (Unable to open file for writing PDB) created by chimerax-bug-report@…
[…]
4:44 AM Ticket #5174 (Index error opening regular PDB in MD Viewer) created by chimerax-bug-report@…
[…]
3:26 AM Ticket #5173 (Trojan in distribution?) created by Tristan Croll
Could well be a false detection, but my university-installed McAfee

Sep 5, 2021:

9:37 PM Ticket #5172 (Graphics driver crash, macOS 11.3.1, Intel UHD Graphics 617) created by ashlee.finch23@…
[…]
8:23 PM Ticket #5171 (Graphics driver crash, macOS 11.5.2, Intel Iris Graphics 6100) created by mailvinod@…
[…]
4:29 PM Ticket #5170 (Crash showing system color panel) created by chimerax-bug-report@…
[…]
11:51 AM Ticket #5169 (Qt crash during exit) created by chimerax-bug-report@…
[…]
6:28 AM Ticket #5168 (self._positions is None) created by idocaspy@…
[…]

Sep 4, 2021:

11:20 PM Ticket #5167 (Crash computing surface cap) created by chimerax-bug-report@…
[…]
5:47 PM Ticket #5166 (Fit in map gives wrong position if moved model has a moved parent) closed by Tom Goddard
fixed: Fixed. Code that moved atomic structures, maps or atoms into another …
4:56 PM Ticket #5166 (Fit in map gives wrong position if moved model has a moved parent) created by goddard@…
[…]
12:39 AM Ticket #5165 (AlphaFold second prediction overwrites first prediction) closed by Tom Goddard
fixed: Fixed. AlphaFold Run tool was a single instance and remembered the …

Sep 3, 2021:

11:21 PM Ticket #5165 (AlphaFold second prediction overwrites first prediction) created by goddard@…
[…]
1:16 PM Ticket #5120 ((Various modules) Malformed docstrings) closed by Zach Pearson
fixed: Merged sphinx_napoleon_typehints into develop.
1:02 PM Ticket #5158 (Graphics driver crash, macOS 10.14.6, Radeon Vega Pro 20) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. The Qt window toolkit used by ChimeraX …
12:55 PM Ticket #5156 (Graphics driver crash, macOS 11.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
12:49 PM Ticket #5155 (Crash in Qt event loop) closed by Tom Goddard
can't reproduce: Crashed in the Qt event loop. No clues why. Suspiciously there is …
12:44 PM Ticket #5164 (Include reference documentation) created by Zach Pearson
In a developer meeting I was asked to provide reference docstrings …
10:21 AM Ticket #5163 (mmCIF UniProt mapping not robust against '?' data) created by Tristan Croll
[…]
9:11 AM Ticket #5160 (Crash in sseq.structure) closed by pett
fixed: Hi Avi, Thanks for reporting this problem. We believe it is fixed in …
9:08 AM Ticket #5159 (Crash with trashed stack) closed by pett
can't reproduce
8:54 AM Ticket #5162 (Support 2-character chain IDs in SEQRES) created by Tristan Croll
[…] combined.pdb
6:26 AM Ticket #5160 (Crash in sseq.structure) created by avsinger@…
[…]
5:20 AM Ticket #5159 (Crash with trashed stack) created by chimerax-bug-report@…
[…]
3:13 AM Ticket #5158 (Graphics driver crash, macOS 10.14.6, Radeon Vega Pro 20) created by bingchun.zhao@…
[…]
1:18 AM Ticket #5157 (PyPi dependency not installed by "devel install") created by i.m.lagerwaard@…
[…] bundle_info.xml

Sep 2, 2021:

11:32 PM Ticket #5156 (Graphics driver crash, macOS 11.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
9:50 PM Ticket #5155 (Crash in Qt event loop) created by chimerax-bug-report@…
[…]
7:03 PM Ticket #5136 (KeyError saving mmCIF file) closed by Greg Couch
fixed: Eric, this is because after the {{{setattr #1.1/a chain chain_id …
5:54 PM Ticket #5057 (Don't produce traceback when unable to restore new session) closed by pett
fixed: I'm bumping the maxSessionVersion in bundle_info.xml now, which sort …
5:51 PM Ticket #5141 (Hand-drawn regions can include headers) closed by pett
fixed
5:30 PM Ticket #5122 (Improve Tools menu categories) closed by pett
fixed: Moved some tools and added some categories as per our offline …
5:04 PM Ticket #5152 (Crash in pyopengl numpy allocation for setting shader matrix) closed by Tom Goddard
can't reproduce: Crash looks like it was allocating a numpy array from the Python …
4:56 PM Ticket #5151 (Cannot multiply Place times "None") closed by Tom Goddard
duplicate: Fixed a year and a half ago. #3057
4:51 PM Ticket #5147 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
duplicate: Apple graphics driver crash, same as #5146. You are using very old …
3:21 PM Dev2021-9-2 edited by Tom Goddard
(diff)
1:55 PM Dev2021-9-2 edited by Tom Goddard
(diff)
12:50 PM Ticket #5139 (Saved session file huge for small atomic model) closed by pett
fixed: Fix applied. Will be in next daily build.
12:36 PM 2021-9-2 edited by Tom Goddard
(diff)
11:03 AM 2021-9-2 edited by Tom Goddard
(diff)
10:58 AM Ticket #5154 (Crash in open-folder dialog with wonky traceback output) created by lucas.tafurpetrozzi@…
[…]
10:38 AM Ticket #5153 (Crash getting string representation of residue) closed by pett
can't reproduce: The compiled Cython code does not directly call slot_tp_getattr_hook, …
9:59 AM Ticket #5149 (Crash opening PDB file) closed by pett
duplicate
9:58 AM Ticket #5148 (Crash opening PDB file) closed by pett
can't reproduce: Likely file includes non-ASCII characters, which has been fixed.
9:56 AM Ticket #5153 (Crash getting string representation of residue) created by chimerax-bug-report@…
[…]
9:20 AM ChangeLog edited by Elaine Meng
(diff)
9:10 AM ChangeLog edited by Elaine Meng
(diff)
8:59 AM Ticket #5139 (Saved session file huge for small atomic model) reopened by pett
8:01 AM Ticket #5152 (Crash in pyopengl numpy allocation for setting shader matrix) created by chimerax-bug-report@…
[…]
7:44 AM Ticket #5151 (Cannot multiply Place times "None") created by chimerax-bug-report@…
[…]
12:27 AM Ticket #5150 (Unknown crash) created by segieyeh@…
[…]

Sep 1, 2021:

7:16 PM Ticket #5149 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
7:12 PM Ticket #5148 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
6:13 PM Ticket #5147 (Graphics hardware encountered an error and was reset) created by apadavannil@…
[…]
4:24 PM Ticket #5139 (Saved session file huge for small atomic model) closed by pett
fixed: My best guess is that: 1) This session file originally predates the …
4:08 PM Ticket #5146 (Mac graphics crash, macOS 10.14.6, Geforce GT 750M) closed by Tom Goddard
nonchimerax: Crashed in Apple graphics driver. Unfortunately Apple's graphic …
4:03 PM Ticket #5145 (Startup openGL errors) closed by Tom Goddard
can't reproduce: Duplicate of #4367. Apparently a Mac Qt bug. This bug report …
3:43 PM Ticket #5138 (Make undocked tool windows iconify when main window iconified) closed by Tom Goddard
fixed: Fixed. Used the existing "ui hideFloating" command code to …
3:42 PM Ticket #5144 (MD Viewer: opening non-trajectory) closed by pett
not a bug
3:17 PM Ticket #5142 (Dead tool window somehow receiving keystroke) closed by pett
can't reproduce
1:42 PM Ticket #5146 (Mac graphics crash, macOS 10.14.6, Geforce GT 750M) created by apadavannil@…
[…]
9:51 AM Ticket #5145 (Startup openGL errors) created by chimerax-bug-report@…
[…]
7:20 AM Ticket #5144 (MD Viewer: opening non-trajectory) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #5143 (Avoid recalculating idatm_types for entire model after changes?) created by Tristan Croll
When working on large models (particularly those with lots of rings on …
5:01 AM Ticket #5142 (Dead tool window somehow receiving keystroke) created by chimerax-bug-report@…
[…]
3:17 AM Ticket #5141 (Hand-drawn regions can include headers) created by manikandan.k@…
[…]
1:45 AM Ticket #5140 (OpenMM: Error initializing CUDA: CUDA_ERROR_UNKNOWN) created by chimerax-bug-report@…
[…]
12:45 AM Ticket #5139 (Saved session file huge for small atomic model) created by drorn@…
[…]

Aug 31, 2021:

10:24 PM Ticket #5138 (Make undocked tool windows iconify when main window iconified) created by goddard@…
[…]
9:55 PM Ticket #3761 (Warning when quitting about WebEnginePage profile released too soon) closed by Tom Goddard
fixed: Fixed. Made ChimeraXHtmlView instances delete themselves on the "app …
8:13 PM Ticket #5137 (Toolbar appearance changed on Mac) created by goddard@…
[…]
3:11 PM Ticket #5135 (need to register alphafold-created attributes) closed by Tom Goddard
fixed: Fixed. Thanks for catching this. Attributes will now be saved in …
1:58 PM Ticket #5136 (KeyError saving mmCIF file) created by xiangan.liu@…
[…]
1:09 PM Ticket #5135 (need to register alphafold-created attributes) created by Elaine Meng
When I use alphafold match to existing chain(s) it creates various …
12:30 PM Ticket #5134 (Blastprotein Qt GUI breaks alphafold search) created by Zach Pearson
blocks #5133 AlphaFold tries to register a command and can't because …
10:41 AM Ticket #5133 (Blast REST service error) created by goddard@…
[…]
9:41 AM Ticket #5131 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: Apple graphics driver crash Graphics hardware encountered an error …
9:40 AM Ticket #5128 (Error initializing CUDA: CUDA_ERROR_NO_DEVICE) closed by Tristan Croll
fixed: That's a really odd one - seems they've installed CUDA, but don't …
9:40 AM Ticket #5132 (Unknown crash) closed by pett
can't reproduce
9:33 AM Ticket #5127 (Qt crash during exit) closed by pett
can't reproduce
9:32 AM 2021-9-2 created by Tom Goddard
9:31 AM DeveloperMeetings edited by Tom Goddard
(diff)
1:04 AM Ticket #5132 (Unknown crash) created by chimerax-bug-report@…
[…]
12:41 AM Ticket #5131 (Graphics hardware encountered an error and was reset) created by lhopf@…
[…]

Aug 30, 2021:

6:39 PM Ticket #5130 (Paid AWS account for VR meeting server) created by Tom Goddard
The VR meeting server chimeraxmeeting.net is hosted by an Amazon Web …
5:17 PM Ticket #5129 (Graphics artifacts with silhouettes on Mac) closed by Tom Goddard
nonchimerax
4:49 PM Ticket #5126 ('view' session data is None) closed by Tom Goddard
limitation: Hi Randy, Thanks for checking the session. And thanks Greg, I …
1:45 PM Ticket #5129 (Graphics artifacts with silhouettes on Mac) created by nharper@…
[…] test.png
1:12 PM Ticket #5128 (Error initializing CUDA: CUDA_ERROR_NO_DEVICE) created by chimerax-bug-report@…
[…]
11:58 AM Ticket #5112 (AlignSeqPairArg gives sequence with incorrect polymer_type PT_NONE) closed by pett
fixed: Copied StructureSeqs weren't copying polymer_type
11:41 AM Ticket #5127 (Qt crash during exit) created by chimerax-bug-report@…
[…]
11:35 AM Ticket #5125 (RFE: scroll contour) closed by Tom Goddard
wontfix: It's a nice idea. But the Volume panel itself scrolls when several …
11:24 AM Ticket #5121 (OpenGL startup errors) closed by Tom Goddard
nonchimerax: ChimeraX cannot start because your Radeon graphics driver is broken. …
10:44 AM Ticket #5126 ('view' session data is None) created by ewatson@…
[…]
10:25 AM Ticket #5119 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by pett
can't reproduce: Hi Jonathan, Thanks for reporting this problem. I have tried various …
9:27 AM Ticket #5123 (Dual display crash) closed by pett
duplicate: Qt 5.12
6:55 AM Ticket #5125 (RFE: scroll contour) created by jaremko@…
[…]

Aug 29, 2021:

10:43 PM Ticket #5124 (Crash loading OpenMM plugins) created by Helge.Paternoga@…
[…]
9:36 PM Ticket #5123 (Dual display crash) created by chimerax-bug-report@…
[…]

Aug 27, 2021:

6:02 PM Dev2021-9-2 edited by Tom Goddard
(diff)
5:53 PM Ticket #5122 (Improve Tools menu categories) created by Tom Goddard
The AlphaFold tool does not seem to belong in menu Tools / Structure …
5:40 PM Ticket #5115 (Crash in Python garbage collection while fetching attribute) closed by Tom Goddard
duplicate: This is our old friend the Python garbage collection crash. It is in …
5:24 PM Dev2021-9-2 edited by Tom Goddard
(diff)
5:23 PM Dev2021-9-2 created by Tom Goddard
5:22 PM DeveloperMeetings edited by Tom Goddard
(diff)
4:56 PM Ticket #5121 (OpenGL startup errors) created by ElhaiJ@…
[…]
3:42 PM Ticket #5117 (Modeller results disliked by Coot) closed by pett
nonchimerax: Hi Yen-Li, ChimeraX merely makes it easy to prepare the inputs and …
3:40 PM Ticket #5120 ((Various modules) Malformed docstrings) created by Zach Pearson
While looking at what it would take to tackle this ticket …
1:33 PM 2021-8-26 edited by Tom Goddard
(diff)
1:30 PM Ticket #5119 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by jonathan.sheehan@…
[…]
1:21 PM Ticket #5111 (Modeller sequence/structure mismatch) closed by pett
fixed: Apparently fixed in the daily build.
1:07 PM ChangeLog edited by Elaine Meng
(diff)
12:47 PM NTTData edited by Elaine Meng
(diff)
12:44 PM NTTData edited by Elaine Meng
(diff)
12:42 PM NTTData edited by Elaine Meng
(diff)
12:42 PM NTTData edited by Elaine Meng
(diff)
12:27 PM Ticket #5118 (ChimeraX hangs if the blastprotein module can't connect) created by goddard@…
During a meeting yesterday (26 August) our infrastructure was down. …
12:24 PM Ticket #5116 (quick question...) closed by Zach Pearson
fixed: Hi Monique, A power outage took our infrastructure out yesterday. …
11:37 AM Ticket #5117 (Modeller results disliked by Coot) created by yen-li.li@…
[…] modeller model in coot.png
10:01 AM Ticket #5116 (quick question...) created by mrogals@…
[…]

Aug 25, 2021:

7:48 PM Ticket #5115 (Crash in Python garbage collection while fetching attribute) created by goddard@…
[…]
5:57 PM Ticket #5114 (volume maximum not extending map bounds) closed by Tom Goddard
fixed: Fixed. The map combine operation was using Volume.region_grid() and …
5:52 PM Ticket #5114 (volume maximum not extending map bounds) created by goddard@…
[…]
5:46 PM Ticket #5113 (Session depends on atomic bundle when no atomic models opened) created by goddard@…
[…]
4:29 PM Ticket #5112 (AlignSeqPairArg gives sequence with incorrect polymer_type PT_NONE) created by goddard@…
[…]
3:26 PM Ticket #5111 (Modeller sequence/structure mismatch) created by chimerax-bug-report@…
[…]
11:20 AM Ticket #5108 (Crystal Contacts: set model menu to invalid value) closed by Tom Goddard
fixed: Fixed. ChimeraX unit cell tool did not start because a bug where it …
10:48 AM Ticket #5095 (Error closing altloc explorer tool) closed by pett
fixed: Only happens with no structures open.
10:41 AM Ticket #5107 (Boolean attribute test produces traceback) closed by pett
fixed
10:11 AM Ticket #5110 (Crash in set sseq.chain_id) closed by pett
fixed: Hi Caitie, Thanks for getting back to me. I can indeed get 1.0 to …
9:55 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) closed by pett
duplicate
9:54 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) reopened by pett
9:28 AM Ticket #5110 (Crash in set sseq.chain_id) created by caitie.mccafferty@…
[…]
8:16 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) closed by Zach Pearson
duplicate: Duplicate of #5108
4:01 AM Ticket #5109 (Crystal Contacts: set model menu to invalid value) created by chimerax-bug-report@…
[…]
4:00 AM Ticket #5108 (Crystal Contacts: set model menu to invalid value) created by ulrich.baumann@…
[…]
Note: See TracTimeline for information about the timeline view.