![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5180 closed defect (can't reproduce)
ctypes crash
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-20.6.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [9166]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [9166]
User ID: 501
Date/Time: 2021-09-07 11:32:58.271 -0700
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Anonymous UUID: 6BF605F2-EC3B-7EB1-243E-21BBC6DD445E
Sleep/Wake UUID: 67A8F23D-AFC9-4EAC-B56A-8AC49D723253
Time Awake Since Boot: 110000 seconds
Time Since Wake: 6700 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 1007a8000-1007a9000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203db92e __pthread_kill + 10
2 libsystem_c.dylib 0x00007fff202eebd5 raise + 26
3 libsystem_platform.dylib 0x00007fff2044fd7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 _ctypes.cpython-37m-darwin.so 0x000000011fa179fd c_void_p_from_param + 301
6 org.python.python 0x0000000108cf6087 _PyMethodDef_RawFastCallDict + 647
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffbd7a28 0x7ffdffbd3000 + 18984
1 runtime 0x00007ffdffbdceec 0x7ffdffbd3000 + 40684
2 runtime 0x00007ffdffbde2c0 0x7ffdffbd3000 + 45760
Thread 2:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 3:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 4:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 5:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 6:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 7:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 8:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 libopenblasp-r0.3.7.dylib 0x000000010b5e1c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 9:: com.apple.NSEventThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff20503855 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20501f0b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20501310 CFRunLoopRunSpecific + 567
5 com.apple.AppKit 0x00007fff22db923a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129b9e05d 0x127a48000 + 34955357
5 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 11:: DnsConfigService
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d9c4a kevent + 10
2 QtWebEngineCore 0x0000000129ea8cbd 0x127a48000 + 38145213
3 QtWebEngineCore 0x0000000129c5fcdc 0x127a48000 + 35749084
4 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
5 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
6 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 12:: TaskSchedulerServiceThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d9c4a kevent + 10
2 QtWebEngineCore 0x0000000129ea8cbd 0x127a48000 + 38145213
3 QtWebEngineCore 0x0000000129c5fcc4 0x127a48000 + 35749060
4 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
5 QtWebEngineCore 0x0000000129c08a74 0x127a48000 + 35392116
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 13:: TaskSchedulerForegroundWorker
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea421 0x127a48000 + 35267617
4 QtWebEngineCore 0x0000000129c01d28 0x127a48000 + 35364136
5 QtWebEngineCore 0x0000000129c0265b 0x127a48000 + 35366491
6 QtWebEngineCore 0x0000000129c022c4 0x127a48000 + 35365572
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 14:: TaskSchedulerBackgroundWorker
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea421 0x127a48000 + 35267617
4 QtWebEngineCore 0x0000000129c01d28 0x127a48000 + 35364136
5 QtWebEngineCore 0x0000000129c0265b 0x127a48000 + 35366491
6 QtWebEngineCore 0x0000000129c02234 0x127a48000 + 35365428
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 15:: TaskSchedulerBackgroundBlockingWorker
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea421 0x127a48000 + 35267617
4 QtWebEngineCore 0x0000000129c01d28 0x127a48000 + 35364136
5 QtWebEngineCore 0x0000000129c0265b 0x127a48000 + 35366491
6 QtWebEngineCore 0x0000000129c02234 0x127a48000 + 35365428
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 16:: Chrome_IOThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d9c4a kevent + 10
2 QtWebEngineCore 0x0000000129ea8cbd 0x127a48000 + 38145213
3 QtWebEngineCore 0x0000000129c5fcc4 0x127a48000 + 35749060
4 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
5 QtWebEngineCore 0x0000000129535fe4 0x127a48000 + 28237796
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 17:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129c01d1a 0x127a48000 + 35364122
5 QtWebEngineCore 0x0000000129c023bf 0x127a48000 + 35365823
6 QtWebEngineCore 0x0000000129c02264 0x127a48000 + 35365476
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 18:: CompositorTileWorker1/61443
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 QtWebEngineCore 0x0000000129c57fa8 0x127a48000 + 35717032
3 QtWebEngineCore 0x000000012abde4c8 0x127a48000 + 51995848
4 QtWebEngineCore 0x0000000129c18694 0x127a48000 + 35456660
5 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
6 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 19:: AudioThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129b9e05d 0x127a48000 + 34955357
5 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 20:: Chrome_InProcGpuThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129b9e052 0x127a48000 + 34955346
4 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
5 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
6 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 21:: Chrome_ChildIOThread
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d9c4a kevent + 10
2 QtWebEngineCore 0x0000000129ea8cbd 0x127a48000 + 38145213
3 QtWebEngineCore 0x0000000129c5fcdc 0x127a48000 + 35749084
4 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
5 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
6 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 22:: NetworkConfigWatcher
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129b9e05d 0x127a48000 + 34955357
5 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 23:: TaskSchedulerSingleThreadForegroundBlocking1
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129c01d1a 0x127a48000 + 35364122
5 QtWebEngineCore 0x0000000129c0265b 0x127a48000 + 35366491
6 QtWebEngineCore 0x0000000129c02324 0x127a48000 + 35365668
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 24:: NetworkConfigWatcher
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea22f 0x127a48000 + 35267119
4 QtWebEngineCore 0x0000000129b9e05d 0x127a48000 + 34955357
5 QtWebEngineCore 0x0000000129bc7085 0x127a48000 + 35123333
6 QtWebEngineCore 0x0000000129c199bc 0x127a48000 + 35461564
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 25:: TaskSchedulerForegroundBlockingWorker
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea421 0x127a48000 + 35267617
4 QtWebEngineCore 0x0000000129c01d28 0x127a48000 + 35364136
5 QtWebEngineCore 0x0000000129c0265b 0x127a48000 + 35366491
6 QtWebEngineCore 0x0000000129c022c4 0x127a48000 + 35365572
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 26:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 27:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 28:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 29:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 30:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 31:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 32:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 33:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 34:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 35:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 36:: QFileInfoGatherer
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 QtCore 0x0000000123f248ab 0x123efa000 + 174251
3 QtCore 0x0000000123f2480c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000012267d762 0x122442000 + 2340706
5 QtCore 0x0000000123f1c0b3 0x123efa000 + 139443
6 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 37:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 38:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 39:: TaskSchedulerForegroundWorker
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d52ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000129bea32d 0x127a48000 + 35267373
3 QtWebEngineCore 0x0000000129bea421 0x127a48000 + 35267617
4 QtWebEngineCore 0x0000000129c01d28 0x127a48000 + 35364136
5 QtWebEngineCore 0x0000000129c023bf 0x127a48000 + 35365823
6 QtWebEngineCore 0x0000000129c022c4 0x127a48000 + 35365572
7 QtWebEngineCore 0x0000000129c59717 0x127a48000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 40:
0 runtime 0x00007ffdffbf57c8 0x7ffdffbd3000 + 141256
Thread 41:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 org.python.python 0x0000000108e0f0af PyThread_acquire_lock_timed + 351
3 org.python.python 0x0000000108e5a9df acquire_timed + 111
4 org.python.python 0x0000000108e5a75c lock_PyThread_acquire_lock + 44
5 org.python.python 0x0000000108cf656a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x0000000108cfc571 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000108dcabfe call_function + 814
8 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000108dcba2c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000108cf5879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000108dcabd4 call_function + 772
12 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000108dcba2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000108cf5879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000108dcabd4 call_function + 772
16 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
18 org.python.python 0x0000000108dcabd4 call_function + 772
19 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
21 org.python.python 0x0000000108dcabd4 call_function + 772
22 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
24 org.python.python 0x0000000108cf6873 _PyObject_Call_Prepend + 131
25 org.python.python 0x0000000108cf59d8 PyObject_Call + 136
26 org.python.python 0x0000000108e5b287 t_bootstrap + 71
27 org.python.python 0x0000000108e0ed19 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
29 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 42:
0 ??? 0x00007ffe946428f4 ???
1 libsystem_kernel.dylib 0x00007fff203d7cde __psynch_cvwait + 10
2 org.python.python 0x0000000108e0f0af PyThread_acquire_lock_timed + 351
3 org.python.python 0x0000000108e5a9df acquire_timed + 111
4 org.python.python 0x0000000108e5a75c lock_PyThread_acquire_lock + 44
5 org.python.python 0x0000000108cf656a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x0000000108cfc571 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000108dcabfe call_function + 814
8 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000108dcba2c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000108cf5879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000108dcabd4 call_function + 772
12 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000108dcba2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000108cf5879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000108dcabd4 call_function + 772
16 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
18 org.python.python 0x0000000108dcabd4 call_function + 772
19 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
21 org.python.python 0x0000000108dcabd4 call_function + 772
22 org.python.python 0x0000000108dc77fa _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000108cf5d61 function_code_fastcall + 177
24 org.python.python 0x0000000108cf6873 _PyObject_Call_Prepend + 131
25 org.python.python 0x0000000108cf59d8 PyObject_Call + 136
26 org.python.python 0x0000000108e5b287 t_bootstrap + 71
27 org.python.python 0x0000000108e0ed19 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff2040a8fc _pthread_start + 224
29 libsystem_pthread.dylib 0x00007fff20406443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000200a7be00 rcx: 0x0000000000000000 rdx: 0x0000000000000000
rdi: 0x1410cd8c19e56317 rsi: 0x000000013c2f1088 rbp: 0x1410cd8c19e56317 rsp: 0x000000013c2f1088
r8: 0x000000000000000b r9: 0x1410cd8c19e56317 r10: 0x0000000200a7be00 r11: 0x00007fff202eebbb
r12: 0x0000000000000103 r13: 0x0000000109415000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: rfl: 0x0000000000000283
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0x7fff3506b000 - 0x7fff3506dfff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff35085000 - 0x7fff3509afff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff350f0000 - 0x7fff3515bfff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff35221000 - 0x7fff35224fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff3526e000 - 0x7fff35662fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff35e0e000 - 0x7fff35e15fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff36657000 - 0x7fff36687fff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff36688000 - 0x7fff366a8fff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff366a9000 - 0x7fff366bcfff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff366bd000 - 0x7fff366e0fff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff366e1000 - 0x7fff366e4fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff366e5000 - 0x7fff366e8fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff366e9000 - 0x7fff366ecfff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff366ed000 - 0x7fff366f4fff com.apple.ImageCapture (1711.5.2 - 1711.5.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff366f5000 - 0x7fff378e5fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37951000 - 0x7fff37a63fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37a64000 - 0x7fff37af7fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37af8000 - 0x7fff37d42fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff3873e000 - 0x7fff3874dfff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff3874e000 - 0x7fff38875fff com.apple.QuickLookUIFramework (5.0 - 928.4) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38876000 - 0x7fff38893fff com.apple.IOGPU (21.11 - 21.11) /System/Library/PrivateFrameworks/IOGPU.framework/Versions/A/IOGPU
0x7fff38e62000 - 0x7fff38e62fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff39516000 - 0x7fff3951dfff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3951e000 - 0x7fff3952cfff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff3952d000 - 0x7fff39544fff libAccessibility.dylib (2885.49) /usr/lib/libAccessibility.dylib
0x7fff3bf7f000 - 0x7fff3bfa1fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bfa2000 - 0x7fff3c039fff com.apple.AirPlaySync (1.0 - 2780.10) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cbca000 - 0x7fff3cc4dfff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3cc4e000 - 0x7fff3cc51fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3cc52000 - 0x7fff3cc55fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cd4e000 - 0x7fff3cd4efff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cf08000 - 0x7fff3cf27fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d074000 - 0x7fff3d0cafff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3d0cb000 - 0x7fff3d0e8fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d0e9000 - 0x7fff3d0ecfff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d504000 - 0x7fff3d50afff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d67b000 - 0x7fff3d692fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d845000 - 0x7fff3d850fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d865000 - 0x7fff3d877fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d894000 - 0x7fff3da03fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3da04000 - 0x7fff3dc5ffff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3dc60000 - 0x7fff3dd76fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3dd77000 - 0x7fff3dd88fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e3ab000 - 0x7fff3e40dfff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e40e000 - 0x7fff3e433fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3eaef000 - 0x7fff3ec1bfff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ec1c000 - 0x7fff3f0bcfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f0bd000 - 0x7fff3f1a5fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3feec000 - 0x7fff3ff69fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff41104000 - 0x7fff41107fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4152c000 - 0x7fff41549fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43ad8000 - 0x7fff43d4bfff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff47c54000 - 0x7fff47c94fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff518c8000 - 0x7fff518f5fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff518f6000 - 0x7fff51910fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51911000 - 0x7fff519b0fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff54247000 - 0x7fff5427dfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55874000 - 0x7fff55877fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff69970000 - 0x7fff69974fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bdbb000 - 0x7fff6bdc1fff libCoreFSCache.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bdc2000 - 0x7fff6bdc6fff libCoreVMClient.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bdc7000 - 0x7fff6bdd6fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bdd7000 - 0x7fff6bdd9fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bdda000 - 0x7fff6bde2fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bde3000 - 0x7fff6be16fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6be17000 - 0x7fff6be53fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6be54000 - 0x7fff6bfe7fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bfe8000 - 0x7fff6bff2fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bff3000 - 0x7fff6c170fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c171000 - 0x7fff6c199fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d432000 - 0x7fff6d48afff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e534000 - 0x7fff6e53bfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e53c000 - 0x7fff6e623fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fba1000 - 0x7fff6fbb3fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73eb5000 - 0x7fff73ec0fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff740d6000 - 0x7fff740eefff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77c66000 - 0x7fff77c6dfff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
Translated Code Information:
tmp0: 0xffffffffffffffff tmp1: 0x00007ffe946428c8 tmp2: 0x00007fff203db924
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=3.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 7680K 18
CG image 176K 39
CoreAnimation 144K 25
CoreGraphics 20K 4
CoreServices 624K 2
CoreUI image data 1920K 22
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 1.3G 99
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 808.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
Rosetta Arena 4096K 2
Rosetta Generic 1380K 342
Rosetta IndirectBranch 2048K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 840K 84
Rosetta Thread Context 840K 84
STACK GUARD 52K 13
Stack 165.2M 42
Stack Guard 56.1M 29
VM_ALLOCATE 183.9M 520
VM_ALLOCATE (reserved) 160.1M 20 reserved VM address space (unallocated)
__DATA 28.9M 589
__DATA_CONST 21.1M 261
__DATA_DIRTY 1196K 167
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 530.8M 151
__OBJC_RO 70.3M 1
__OBJC_RW 2480K 2
__TEXT 533.4M 563
__UNICODE 588K 1
mapped file 4.4G 1003
shared memory 820K 20
unshared pmap 10.2M 6
=========== ======= =======
TOTAL 8.6G 4145
TOTAL, minus reserved VM space 7.4G 4145
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 3 days 14:03
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
R240HY:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ctypes crash |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Not much info in the traceback. Thread 36 is in QFileInfoGatherer and threads 41 and 42 are Python code, those might have something to do with this crash.