Opened 4 years ago

Closed 4 years ago

#5128 closed defect (fixed)

Error initializing CUDA: CUDA_ERROR_NO_DEVICE

Reported by: chimerax-bug-report@… Owned by: Tristan Croll
Priority: normal Milestone:
Component: Third Party Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.13.12-arch1-1-x86_64-with-arch
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /home/livia/Cristalografia/epaE_Sirus_04-12-20/phenix/Refine_47/epaE_refine_47.pdb
> format pdb

Chain information for epaE_refine_47.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> ui tool show ISOLDE

> set selectionWidth 4

Chain information for epaE_refine_47.pdb  
---  
Chain | Description  
1.2/A | No description available  
1.2/B | No description available  
1.2/C | No description available  
1.2/D | No description available  
  
Done loading forcefield  

> addh

Summary of feedback from adding hydrogens to epaE_refine_47.pdb #1.2  
---  
warnings | Not adding hydrogens to /A LYS 2 CB because it is missing heavy-
atom bond partners  
Not adding hydrogens to /A ILE 4 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A LEU 6 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A THR 12 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A ARG 13 CB because it is missing heavy-atom bond
partners  
306 messages similar to the above omitted  
notes | No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain A;
guessing termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain B; guessing
termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain C; guessing
termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain D; guessing
termini instead  
Chain-initial residues that are actual N termini: /A MET 1, /B MET 0, /C LYS
2, /D MET 1  
Chain-initial residues that are not actual N termini: /A GLY 11, /A ASN 47, /A
ASP 84, /A VAL 102, /A GLY 129, /A ASP 139, /A PHE 143, /A ILE 157, /A ALA
169, /A LEU 195, /A LEU 210, /A THR 262, /B ARG 13, /B THR 54, /B GLY 72, /B
HIS 74, /B SER 82, /B ALA 87, /B VAL 102, /B LEU 116, /B GLY 129, /B VAL 132,
/B PRO 140, /B PHE 143, /B GLU 158, /B PRO 164, /B ASN 178, /B LYS 185, /B ARG
192, /B LEU 195, /B LEU 210, /B GLU 213, /B GLY 218, /C SER 10, /C ASP 57, /C
ILE 73, /C TYR 77, /C GLY 85, /C PHE 96, /C ALA 130, /C PHE 143, /C ILE 157,
/C TYR 168, /C GLU 179, /C ILE 187, /C GLU 194, /C SER 211, /C GLU 213, /C TYR
260, /C THR 262, /C ALA 270, /C TYR 278, /D LEU 86, /D ILE 97, /D GLU 127, /D
ALA 130, /D PRO 140, /D PHE 143, /D GLU 159, /D TYR 168, /D GLY 193, /D GLU
196  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /A ARG 284, /A GLY 9, /A
ALA 44, /A VAL 79, /A GLY 98, /A LYS 126, /A VAL 137, /A PRO 140, /A VAL 145,
/A PRO 164, /A PRO 189, /A LYS 207, /A MET 258, /B ARG 284, /B GLY 8, /B ILE
52, /B ASP 70, /B GLY 72, /B GLN 80, /B ASP 84, /B ASP 99, /B GLY 113, /B ALA
124, /B ALA 130, /B ASN 138, /B PRO 140, /B VAL 145, /B ALA 162, /B TYR 176,
/B ILE 183, /B LYS 185, /B GLY 193, /B ASN 208, /B LEU 210, /B MET 215, /C ARG
284, /C ALA 7, /C THR 54, /C LEU 71, /C ILE 75, /C PRO 83, /C GLY 93, /C SER
128, /C PRO 140, /C VAL 145, /C PRO 161, /C ASP 177, /C ILE 183, /C PRO 189,
/C TYR 204, /C SER 211, /C ARG 257, /C TYR 260, /C LEU 266, /C LYS 274, /D ALA
285, /D PRO 83, /D GLU 95, /D SER 125, /D GLU 127, /D ASN 138, /D PRO 140, /D
VAL 146, /D ALA 162, /D PRO 189, /D GLU 194  
649 hydrogen bonds  
Adding 'H' to /A GLY 11  
Adding 'H' to /A ASN 47  
Adding 'H' to /A ASP 84  
Adding 'H' to /A VAL 102  
Adding 'H' to /A GLY 129  
54 messages similar to the above omitted  
/A ARG 284 is not terminus, removing H atom from 'C'  
/B ARG 284 is not terminus, removing H atom from 'C'  
/C ARG 284 is not terminus, removing H atom from 'C'  
/D ALA 285 is not terminus, removing H atom from 'C'  
5414 hydrogens added  
  

> hide HC

> set bgColor white

> swapaa /A:42 ile

Using Dunbrack library  
/A MET 42: phi -64.0, psi -35.4 trans  
Applying ILE rotamer (chi angles: -68.1 168.5) to /A ILE 42  

> select #1

11898 atoms, 11976 bonds, 124 pseudobonds, 961 residues, 9 models selected  
Fetching CCD ILE_LL from http://ligand-
expo.rcsb.org/reports/I/ILE_LL/ILE_LL.cif  
Fetching CCD ILE_LEO2 from http://ligand-
expo.rcsb.org/reports/I/ILE_LEO2/ILE_LEO2.cif  
Fetching CCD ILE_LFZW from http://ligand-
expo.rcsb.org/reports/I/ILE_LFZW/ILE_LFZW.cif  

> swapaa /A:42 ile

Using Dunbrack library  
/A ILE 42: phi -64.0, psi -35.4 trans  
Applying ILE rotamer (chi angles: -68.1 168.5) to /A ILE 42  
Fetching CCD VAL_LL from http://ligand-
expo.rcsb.org/reports/V/VAL_LL/VAL_LL.cif  
Fetching CCD VAL_LEO2 from http://ligand-
expo.rcsb.org/reports/V/VAL_LEO2/VAL_LEO2.cif  
Fetching CCD VAL_LFZW from http://ligand-
expo.rcsb.org/reports/V/VAL_LFZW/VAL_LFZW.cif  
Fetching CCD THR_LL_DHG1 from http://ligand-
expo.rcsb.org/reports/T/THR_LL_DHG1/THR_LL_DHG1.cif  
Fetching CCD THR_LL from http://ligand-
expo.rcsb.org/reports/T/THR_LL/THR_LL.cif  
Fetching CCD THR_LSN3_DHG1 from http://ligand-
expo.rcsb.org/reports/T/THR_LSN3_DHG1/THR_LSN3_DHG1.cif  
Fetching CCD THR_LEO2_DHG1 from http://ligand-
expo.rcsb.org/reports/T/THR_LEO2_DHG1/THR_LEO2_DHG1.cif  
Fetching CCD THR_LEO2 from http://ligand-
expo.rcsb.org/reports/T/THR_LEO2/THR_LEO2.cif  
Fetching CCD THR_LFZW_DHG1 from http://ligand-
expo.rcsb.org/reports/T/THR_LFZW_DHG1/THR_LFZW_DHG1.cif  
Fetching CCD THR_LFZW from http://ligand-
expo.rcsb.org/reports/T/THR_LFZW/THR_LFZW.cif  
Fetching CCD THC from http://ligand-expo.rcsb.org/reports/T/THC/THC.cif  

> swapaa /A:42 ile

Using Dunbrack library  
/A ILE 42: phi -64.0, psi -35.4 trans  
Applying ILE rotamer (chi angles: -68.1 168.5) to /A ILE 42  

> swapaa /A:52 ile

Using Dunbrack library  
/A ILE 52: phi -97.1, psi 102.2 trans  
Applying ILE rotamer (chi angles: -164.1 -80.1) to /A ILE 52  
Fetching CCD LYS_LL from http://ligand-
expo.rcsb.org/reports/L/LYS_LL/LYS_LL.cif  
Fetching CCD ASP_LL_DHD2 from http://ligand-
expo.rcsb.org/reports/A/ASP_LL_DHD2/ASP_LL_DHD2.cif  
Fetching CCD ASN_LL from http://ligand-
expo.rcsb.org/reports/A/ASN_LL/ASN_LL.cif  
Fetching CCD ASP_LL from http://ligand-
expo.rcsb.org/reports/A/ASP_LL/ASP_LL.cif  
Fetching CCD ASP_LSN3_DHD2 from http://ligand-
expo.rcsb.org/reports/A/ASP_LSN3_DHD2/ASP_LSN3_DHD2.cif  
Fetching CCD LEU_LL from http://ligand-
expo.rcsb.org/reports/L/LEU_LL/LEU_LL.cif  
Fetching CCD PRO_LFZW from http://ligand-
expo.rcsb.org/reports/P/PRO_LFZW/PRO_LFZW.cif  
Fetching CCD ORN from http://ligand-expo.rcsb.org/reports/O/ORN/ORN.cif  
Fetching CCD GLU_LL_DHE2 from http://ligand-
expo.rcsb.org/reports/G/GLU_LL_DHE2/GLU_LL_DHE2.cif  
Fetching CCD GLU_LL from http://ligand-
expo.rcsb.org/reports/G/GLU_LL/GLU_LL.cif  
Fetching CCD GLN_LL from http://ligand-
expo.rcsb.org/reports/G/GLN_LL/GLN_LL.cif  
Fetching CCD MEN from http://ligand-expo.rcsb.org/reports/M/MEN/MEN.cif  
Fetching CCD GLU_LSN3_DHE2 from http://ligand-
expo.rcsb.org/reports/G/GLU_LSN3_DHE2/GLU_LSN3_DHE2.cif  
Fetching CCD LYS_LL_DHZ3 from http://ligand-
expo.rcsb.org/reports/L/LYS_LL_DHZ3/LYS_LL_DHZ3.cif  
Fetching CCD MET_LL from http://ligand-
expo.rcsb.org/reports/M/MET_LL/MET_LL.cif  
Fetching CCD LEU_LEO2 from http://ligand-
expo.rcsb.org/reports/L/LEU_LEO2/LEU_LEO2.cif  
Fetching CCD HIS_LL_DHE2 from http://ligand-
expo.rcsb.org/reports/H/HIS_LL_DHE2/HIS_LL_DHE2.cif  
Fetching CCD HIS_LL_DHD1 from http://ligand-
expo.rcsb.org/reports/H/HIS_LL_DHD1/HIS_LL_DHD1.cif  
Fetching CCD LEU_LFZW from http://ligand-
expo.rcsb.org/reports/L/LEU_LFZW/LEU_LFZW.cif  
Fetching CCD HIS_LL from http://ligand-
expo.rcsb.org/reports/H/HIS_LL/HIS_LL.cif  
Fetching CCD HIS_LSN3_DHE2 from http://ligand-
expo.rcsb.org/reports/H/HIS_LSN3_DHE2/HIS_LSN3_DHE2.cif  
Fetching CCD HIS_LSN3_DHD1 from http://ligand-
expo.rcsb.org/reports/H/HIS_LSN3_DHD1/HIS_LSN3_DHD1.cif  
Fetching CCD GLU_LEO2_DHE2 from http://ligand-
expo.rcsb.org/reports/G/GLU_LEO2_DHE2/GLU_LEO2_DHE2.cif  
Fetching CCD GLN_LEO2 from http://ligand-
expo.rcsb.org/reports/G/GLN_LEO2/GLN_LEO2.cif  
Fetching CCD GLU_LFZW_DHE2 from http://ligand-
expo.rcsb.org/reports/G/GLU_LFZW_DHE2/GLU_LFZW_DHE2.cif  
Fetching CCD MET_LEO2 from http://ligand-
expo.rcsb.org/reports/M/MET_LEO2/MET_LEO2.cif  
Fetching CCD GLN_LFZW from http://ligand-
expo.rcsb.org/reports/G/GLN_LFZW/GLN_LFZW.cif  
Fetching CCD LYS_LEO2 from http://ligand-
expo.rcsb.org/reports/L/LYS_LEO2/LYS_LEO2.cif  
Fetching CCD LYZ from http://ligand-expo.rcsb.org/reports/L/LYZ/LYZ.cif  
Fetching CCD MLZ from http://ligand-expo.rcsb.org/reports/M/MLZ/MLZ.cif  
Fetching CCD MET_LFZW from http://ligand-
expo.rcsb.org/reports/M/MET_LFZW/MET_LFZW.cif  
Fetching CCD LYS_LFZW from http://ligand-
expo.rcsb.org/reports/L/LYS_LFZW/LYS_LFZW.cif  
Fetching CCD FME from http://ligand-expo.rcsb.org/reports/F/FME/FME.cif  
Deleted the following atoms from residue LYS B185: CE  

> select #1

11965 atoms, 12044 bonds, 124 pseudobonds, 961 residues, 15 models selected  
Reflection data provided as intensities. Performing French & Wilson scaling to
convert to amplitudes...  

> addh

Summary of feedback from adding hydrogens to epaE_refine_47.pdb #1.2  
---  
warnings | Not adding hydrogens to /A LYS 2 CB because it is missing heavy-
atom bond partners  
Not adding hydrogens to /A ILE 4 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A LEU 6 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A THR 12 CB because it is missing heavy-atom bond
partners  
Not adding hydrogens to /A ARG 13 CB because it is missing heavy-atom bond
partners  
296 messages similar to the above omitted  
notes | No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain A;
guessing termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain B; guessing
termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain C; guessing
termini instead  
No usable SEQRES records for epaE_refine_47.pdb (#1.2) chain D; guessing
termini instead  
Chain-initial residues that are actual N termini: /A MET 1, /B MET 0, /C LYS
2, /D MET 1  
Chain-initial residues that are not actual N termini: /A GLY 11, /A ASN 47, /A
ASP 84, /A VAL 102, /A GLY 129, /A ASP 139, /A PHE 143, /A ILE 157, /A ALA
169, /A LEU 195, /A LEU 210, /A THR 262, /B ARG 13, /B THR 54, /B GLY 72, /B
HIS 74, /B SER 82, /B ALA 87, /B VAL 102, /B LEU 116, /B GLY 129, /B VAL 132,
/B PRO 140, /B PHE 143, /B GLU 158, /B PRO 164, /B ASN 178, /B LYS 185, /B ARG
192, /B LEU 195, /B LEU 210, /B GLU 213, /B GLY 218, /C SER 10, /C ASP 57, /C
ILE 73, /C TYR 77, /C GLY 85, /C PHE 96, /C ALA 130, /C PHE 143, /C ILE 157,
/C TYR 168, /C GLU 179, /C ILE 187, /C GLU 194, /C SER 211, /C GLU 213, /C TYR
260, /C THR 262, /C ALA 270, /C TYR 278, /D LEU 86, /D ILE 97, /D GLU 127, /D
ALA 130, /D PRO 140, /D PHE 143, /D GLU 159, /D TYR 168, /D GLY 193, /D GLU
196  
Chain-final residues that are actual C termini:  
Chain-final residues that are not actual C termini: /A ARG 284, /A GLY 9, /A
ALA 44, /A VAL 79, /A GLY 98, /A LYS 126, /A VAL 137, /A PRO 140, /A VAL 145,
/A PRO 164, /A PRO 189, /A LYS 207, /A MET 258, /B ARG 284, /B GLY 8, /B ILE
52, /B ASP 70, /B GLY 72, /B GLN 80, /B ASP 84, /B ASP 99, /B GLY 113, /B ALA
124, /B ALA 130, /B ASN 138, /B PRO 140, /B VAL 145, /B ALA 162, /B TYR 176,
/B ILE 183, /B LYS 185, /B GLY 193, /B ASN 208, /B LEU 210, /B MET 215, /C ARG
284, /C ALA 7, /C THR 54, /C LEU 71, /C ILE 75, /C PRO 83, /C GLY 93, /C SER
128, /C PRO 140, /C VAL 145, /C PRO 161, /C ASP 177, /C ILE 183, /C PRO 189,
/C TYR 204, /C SER 211, /C ARG 257, /C TYR 260, /C LEU 266, /C LYS 274, /D ALA
285, /D PRO 83, /D GLU 95, /D SER 125, /D GLU 127, /D ASN 138, /D PRO 140, /D
VAL 146, /D ALA 162, /D PRO 189, /D GLU 194  
587 hydrogen bonds  
/A ARG 284 is not terminus, removing H atom from 'C'  
/B ARG 284 is not terminus, removing H atom from 'C'  
/C ARG 284 is not terminus, removing H atom from 'C'  
/D ALA 285 is not terminus, removing H atom from 'C'  
0 hydrogens added  
  

> hide HC

> select #1

11965 atoms, 12044 bonds, 124 pseudobonds, 961 residues, 49 models selected  
Updating bulk solvent parameters...  
Updating bulk solvent parameters...  

> select #1

11971 atoms, 12050 bonds, 124 pseudobonds, 961 residues, 49 models selected  
Traceback (most recent call last):  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2707, in _start_sim_or_toggle_pause  
self.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2746, in start_sim  
sm.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 674, in start_sim  
sh.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1601, in start_sim  
self._prepare_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1562, in
_prepare_sim  
integrator, platform, properties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/app/simulation.py", line 105, in __init__  
self.context = mm.Context(self.system, self.integrator, platform,
platformProperties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2707, in _start_sim_or_toggle_pause  
self.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2746, in start_sim  
sm.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 674, in start_sim  
sh.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1601, in start_sim  
self._prepare_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1562, in
_prepare_sim  
integrator, platform, properties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/app/simulation.py", line 105, in __init__  
self.context = mm.Context(self.system, self.integrator, platform,
platformProperties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2707, in _start_sim_or_toggle_pause  
self.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/isolde.py", line 2746, in start_sim  
sm.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 674, in start_sim  
sh.start_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1601, in start_sim  
self._prepare_sim()  
File "/home/livia/.local/share/ChimeraX/1.1/site-
packages/chimerax/isolde/openmm/openmm_interface.py", line 1562, in
_prepare_sim  
integrator, platform, properties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/app/simulation.py", line 105, in __init__  
self.context = mm.Context(self.system, self.integrator, platform,
platformProperties)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
Exception: Error initializing CUDA: CUDA_ERROR_NO_DEVICE (100) at
/opt/conda/conda-
bld/openmm_1574274974962/work/platforms/cuda/src/CudaContext.cpp:148  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/simtk/openmm/openmm.py", line 18608, in __init__  
this = _openmm.new_Context(*args)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.5 (Core Profile) Mesa 21.1.6
OpenGL renderer: llvmpipe (LLVM 12.0.1, 256 bits)
OpenGL vendor: Mesa/X.org
Manufacturer: Dell Inc.
Model: Inspiron 3583
OS: Arch Linux  
Architecture: 64bit ELF
CPU: 8 Intel(R) Core(TM) i5-8265U CPU @ 1.60GHz
Cache Size: 6144 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           7.6Gi       3.2Gi       2.5Gi       408Mi       1.9Gi       3.7Gi
	Swap:          8.0Gi        37Mi       7.9Gi

Graphics:
	00:02.0 VGA compatible controller [0300]: Intel Corporation WhiskeyLake-U GT2 [UHD Graphics 620] [8086:3ea0] (rev 02)	
	DeviceName: Onboard - Video	
	Subsystem: Dell Device [1028:08ca]
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-Clipper: 0.15.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-ISOLDE: 1.1.0
    ChimeraX-Label: 1.0
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    distro: 1.5.0
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2

Change History (2)

comment:1 by pett, 4 years ago

Cc: Tom Goddard added
Component: Unassigned → Third Party
Owner: set to Tristan Croll
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Error initializing CUDA: CUDA_ERROR_NO_DEVICE

comment:2 by Tristan Croll, 4 years ago

Resolution: → fixed
Status: assigned → closed

That's a really odd one - seems they've installed CUDA, but don't actually have a Nvidia GPU installed. Didn't even know that was possible... in any case, ISOLDE now automatically falls back to OpenCL if the CUDA platform fails for any reason.

Note: See TracTickets for help on using tickets.