Timeline



Jun 2, 2025:

6:40 PM Ticket #17875 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This is a known crash and the ChimeraX Bug Report panel described what …
6:01 PM Ticket #17865 (Large number of structures → memory exhaustion) closed by pett
limitation: Glad you've almost gotten the script working. I'll probably have …
5:12 PM Ticket #17868 (AlphaFold: update best model) closed by Tom Goddard
fixed: Fixed in 1.11 daily builds, not in 1.10. I made ChimeraX put a second …
4:12 PM Dev2025-6-3 edited by Tom Goddard
(diff)
3:05 PM Dev2025-6-3 created by Tom Goddard
3:04 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:57 PM Ticket #17875 (Crash on Mac waking from sleep) created by taic@…
[…]
1:11 PM Ticket #17874 (alphafold pae: KeyError: 'pae is not a file in the archive') closed by Tom Goddard
fixed: Added in ChimeraX 1.11 a user friendly error message explaining that …
12:04 PM Ticket #17869 (draw_elements: access violation) closed by Tom Goddard
nonchimerax: Looks like an Intel graphics driver bug. Intel graphics driver …
12:00 PM Ticket #17856 (The cached device pixel ratio value was stale on window expose) closed by pett
can't reproduce: Thanks for the additional info Sasha. I'm pretty sure the message is …
11:52 AM Ticket #17873 (Widget setFocus loop) closed by pett
can't reproduce
11:50 AM Ticket #17872 (Crash destroying OpenGL context on exit) closed by pett
duplicate: From before the fix
11:49 AM Ticket #17871 (glDrawBuffer: invalid operation) closed by pett
limitation: Looks like remote display
11:47 AM Ticket #17870 (Crash destroying OpenGL context on exit) closed by pett
duplicate: From before the fix
11:40 AM Ticket #17867 (Crash in swap_buffers) closed by pett
limitation: Probable remote display
11:39 AM Ticket #17866 (Crash using open/save dialog) closed by pett
can't reproduce: Last stack trace contained _update_graphics_if_needed
11:26 AM Ticket #17860 (Crash in compute_cap) closed by Tom Goddard
can't reproduce: Crashed in the C++ cap computation. Haven't seen this crash in the …
11:04 AM Dev2025-5-5 edited by pett
(diff)
9:45 AM Ticket #17874 (alphafold pae: KeyError: 'pae is not a file in the archive') created by o.bozkurt@…
[…]
9:45 AM Ticket #17873 (Widget setFocus loop) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #17872 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #17871 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #17870 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #17869 (draw_elements: access violation) created by chimerax-bug-report@…
[…]
9:45 AM Ticket #17868 (AlphaFold: update best model) created by hemmecl@…
[…]
9:43 AM Ticket #17867 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]

May 31, 2025:

2:34 PM Ticket #17866 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:31 PM Ticket #17865 (Large number of structures → memory exhaustion) created by alexandra.zahradnikova@…
[…]
7:01 AM Ticket #17864 (Crash in event loop / toolshed load) created by 2023020518@…
[…]

May 30, 2025:

6:12 PM Ticket #17863 (Crash on Mac waking from sleep) closed by pett
duplicate
6:11 PM Ticket #17862 (Crash in StructureSeq.structure) closed by pett
can't reproduce
6:10 PM Ticket #17861 (Crash saving atomic session state) closed by pett
can't reproduce: Could be the garbage-collection bug that was fixed.
1:02 PM Ticket #17863 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:57 PM Ticket #17862 (Crash in StructureSeq.structure) created by chimerax-bug-report@…
[…]
12:48 PM Ticket #17861 (Crash saving atomic session state) created by chimerax-bug-report@…
[…]
12:04 PM Ticket #17860 (Crash in compute_cap) created by chimerax-bug-report@…
[…]
11:58 AM Ticket #17832 (LocScale-SURFER bundle development for Mac OS) closed by Tom Goddard
limitation
10:54 AM Ticket #17859 (Close request on destroyed tool window) closed by pett
can't reproduce
10:49 AM Ticket #17859 (Close request on destroyed tool window) created by chimerax-bug-report@…
[…]
10:41 AM Ticket #17803 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:16 AM Ticket #17858 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
10:01 AM Ticket #17857 (Cannot save command history: No space left on device) closed by pett
nonchimerax
9:49 AM Ticket #17855 (Crash in event loop) closed by pett
can't reproduce
9:44 AM Ticket #17854 (Crash in event loop) closed by pett
can't reproduce: Guessing this was run from the dmg because of all the …
9:41 AM Ticket #17858 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]
8:12 AM Ticket #17857 (Cannot save command history: No space left on device) created by chimerax-bug-report@…
[…]
12:49 AM Ticket #17856 (The cached device pixel ratio value was stale on window expose) created by alexandra.zahradnikova@…
[…]
12:40 AM Ticket #17855 (Crash in event loop) created by chimerax-bug-report@…
[…]

May 29, 2025:

7:49 PM Ticket #17854 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:51 PM Ticket #17853 (Remember render by attribute thresholds when multiple models chosen) created by Willow.Coyote-Maestas@…
Render by attribute remembers the thresholds and colors last used for …
3:05 PM Ticket #17778 (ChimeraX 1.9 SHA256 hash incorrrect) closed by Zach Pearson
fixed: Should be fixed.
2:36 PM Ticket #17851 (Toolbar→Molecule Display→Sequence does not handle blank chain ID) closed by pett
fixed: Fixed. Fix available in next daily build and release candidate, Fix: …
2:22 PM Ticket #17852 (Crash in event loop) closed by pett
can't reproduce
2:12 PM Ticket #17838 (vr roomCamera: AttributeError: 'NoneType' object has no attribute ...) closed by Tom Goddard
fixed: Fixed. User tried to enable VR room camera when VR had not been …
2:10 PM Ticket #17850 (Ticket Updated: INC-171399 - Possible bug on installation) closed by pett
not a bug
12:27 PM Ticket #17852 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:16 AM Ticket #17851 (Toolbar→Molecule Display→Sequence does not handle blank chain ID) created by ddrichma@…
[…]
11:14 AM Ticket #17849 (Various OpenGL errors) closed by Tom Goddard
nonchimerax: Possibly remote display or graphic driver problem. Can't get driver …
11:11 AM Ticket #17846 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX Bug Reporter panel explains what we know about this crash …
11:11 AM Ticket #17850 (Ticket Updated: INC-171399 - Possible bug on installation) created by helpdesk@…
[…]
11:10 AM Ticket #17848 (Ticket Updated: INC-171399 - Possible bug on installation) closed by pett
not a bug
11:07 AM Ticket #17849 (Various OpenGL errors) created by chimerax-bug-report@…
[…]
11:04 AM Ticket #17848 (Ticket Updated: INC-171399 - Possible bug on installation) created by helpdesk@…
[…]
10:58 AM Ticket #17847 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229; using two-month-old version
10:51 AM Ticket #17845 (Re: INC-171399 Possible bug on installation) closed by pett
not a bug: Actually a follow up to #17755; will add the info to that ticket
10:43 AM Ticket #17844 (FoldSeek: Permission denied writing temp file) closed by Tom Goddard
duplicate: This foldseek permission error is fixed in the ChimeraX 1.10 release …
10:36 AM Ticket #17843 ('pip install pyKVFinder' fails with empty error message) closed by pett
duplicate: Duplicate of #17229
10:30 AM Ticket #17842 (Crash in event loop) closed by pett
can't reproduce: After "toolshed show", though that might not be relevant
10:24 AM Ticket #17841 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett
duplicate
10:21 AM Ticket #17840 (Crash in event loop) closed by pett
can't reproduce
10:18 AM Ticket #17839 (Maestro: KeyError: 'i_m_residue_number') closed by pett
duplicate: Duplicate of #9215
10:17 AM Ticket #15588 (Maestro: KeyError: 'i_m_residue_number') closed by pett
can't reproduce: No feedback received
10:06 AM Ticket #17837 (Crash at exit) closed by pett
duplicate: From before the fix went in
10:04 AM Ticket #17836 (Crash using open/save dialog) closed by pett
can't reproduce
9:48 AM Ticket #17847 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
7:38 AM Ticket #17846 (Crash on Mac waking from sleep) created by guillermo.montoya@…
[…]
7:15 AM Ticket #17845 (Re: INC-171399 Possible bug on installation) created by helpdesk@…
[…]
7:04 AM Ticket #17844 (FoldSeek: Permission denied writing temp file) created by semihpehlivan@…
[…]
3:56 AM Ticket #17843 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…
[…]
3:55 AM Ticket #17842 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:35 AM Ticket #17841 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
2:53 AM Ticket #17840 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:19 AM Ticket #17839 (Maestro: KeyError: 'i_m_residue_number') created by chimerax-bug-report@…
[…]
1:11 AM Ticket #17838 (vr roomCamera: AttributeError: 'NoneType' object has no attribute ...) created by chimerax-bug-report@…
[…]
12:04 AM Ticket #17837 (Crash at exit) created by chimerax-bug-report@…
[…]

May 28, 2025:

6:36 PM Ticket #17836 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:03 PM Ticket #17835 (Crash in Qt event loop running AlphaFold prediction) closed by Tom Goddard
can't reproduce
11:54 AM Ticket #17835 (Crash in Qt event loop running AlphaFold prediction) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #17834 (Session save: ItemTable's selectionModel() is None) closed by pett
duplicate: Duplicate of #16653
11:42 AM Ticket #17834 (Session save: ItemTable's selectionModel() is None) created by chimerax-bug-report@…
[…]
11:33 AM Ticket #17833 (Unknown error) closed by pett
can't reproduce: Maybe the tools panels were blank? Dunno.
11:29 AM Ticket #17833 (Unknown error) created by chimerax-bug-report@…
[…]
11:05 AM Ticket #2929 (ChimeraX header files not present in CentOS RPM) closed by Greg Couch
fixed: CString.h is in site-packages/chimerax/core/include/chutil/CString.h
10:42 AM Ticket #17825 (Read MRC: cannot convert float NaN to integer) closed by Tom Goddard
not a bug: I believe this ChimeraX error means the map file …
10:16 AM Ticket #17828 (Segger: invalid literal for int) closed by Tom Goddard
not a bug: User apparently pasted "6vop extract #1 region 0,360,0,360,0,360\n" …
10:14 AM Ticket #17827 (Various OpenGL errors) closed by Tom Goddard
nonchimerax: Graphics driver bug.
9:43 AM Ticket #17831 (Crash using open/save dialog) closed by pett
can't reproduce
9:40 AM Ticket #17830 (MemoryError opening mmCIF files) closed by pett
duplicate
9:23 AM Ticket #17826 (Crash using open/save dialog) closed by pett
can't reproduce: Last stack was in _update_graphics_if_needed
5:48 AM Ticket #17832 (LocScale-SURFER bundle development for Mac OS) created by A.Bharadwaj@…
[…]
4:07 AM Ticket #17831 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
3:39 AM Ticket #17830 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
2:40 AM Ticket #17829 (Crash at startup) created by zhiling9921@…
[…]
1:37 AM Ticket #17828 (Segger: invalid literal for int) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #17827 (Various OpenGL errors) created by chimerax-bug-report@…
[…]
12:31 AM Ticket #17826 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
12:13 AM Ticket #17825 (Read MRC: cannot convert float NaN to integer) created by basavraj.khanppnavar@…
[…]

May 27, 2025:

6:36 PM Ticket #17817 (Mutation Scores: NotImplementedError: cannot remove artist) closed by Tom Goddard
fixed: Fixed in ChimeraX 1.10 release candidates and daily builds dated May …
6:06 PM Ticket #17824 (Swapna and other operations slow) created by matthias.vorlaender@…
Dear ChimeraX team, I have noticed that on some structure I am …
5:28 PM Ticket #17823 (MemoryError opening mmCIF files) closed by pett
duplicate: Hi, This memory problem has been fixed in recent versions of …
4:57 PM Ticket #17823 (MemoryError opening mmCIF files) created by s3988903@…
[…]
4:00 PM Ticket #17820 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
3:59 PM Ticket #17819 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
3:06 PM Ticket #17822 (Allow installing experimental boltz branches for testing) closed by Tom Goddard
fixed: Fixed in 1.10. Added "branch" option to boltz install command.
3:05 PM Ticket #17822 (Allow installing experimental boltz branches for testing) created by Tom Goddard
Would be convenient to be able to specify a git branch of boltz to …
3:00 PM Ticket #17821 (Boltz GUI is ignoring new install location) closed by Tom Goddard
fixed: Fixed in 1.10. It was using the Boltz install location remembered in …
2:57 PM Ticket #17821 (Boltz GUI is ignoring new install location) created by goddard@…
[…]
2:53 PM Ticket #17813 (Building add_charge fails with metadata error) closed by Zach Pearson
fixed: Should be fixed
2:32 PM Ticket #17818 (Crash using open/save dialog) closed by pett
can't reproduce: Last stack trace was in molobject.py
2:21 PM Ticket #17814 (Crash in Qt event loop after opening/displaying MRC file) closed by Tom Goddard
can't reproduce: Crash was in Qt. Not enough info to tell what happened. Probably had …
2:14 PM Ticket #17815 (Many setGeometry errors → crash) closed by pett
can't reproduce: Maybe moving window to smaller display? Dunno.
2:09 PM Ticket #17812 (Crash at exit) closed by pett
duplicate
2:08 PM Ticket #17811 (Crash at exit) closed by pett
can't reproduce
2:05 PM Ticket #17810 (Crash on Mac waking from sleep) closed by pett
duplicate
2:02 PM Ticket #17806 (Crash moving window between screens) closed by Tom Goddard
can't reproduce: Seems to be a Qt bug moving window between screens on Windows, …
2:00 PM Ticket #17809 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
can't reproduce
1:58 PM Ticket #17808 (Crash in graphics driver during Qt drawing) closed by pett
can't reproduce
1:56 PM Ticket #17807 (Crash in python_instances_of_class saving session) closed by pett
can't reproduce
1:52 PM Ticket #17805 (Crash destroying OpenGL context on exit) closed by pett
duplicate: From before the fix
1:50 PM Ticket #17804 (Crash in chem_group on Windows) closed by pett
can't reproduce
1:33 PM Ticket #17802 (Crash on Mac waking from sleep) closed by pett
duplicate
1:32 PM Ticket #17801 (Crash at exit in Qt cleanup routines) closed by pett
can't reproduce
1:24 PM Ticket #17799 (Dead model in Find Cavities table) closed by pett
can't reproduce
1:22 PM Ticket #17798 (Dead model in Find Cavities table) closed by pett
can't reproduce
1:14 PM Ticket #17797 (Crash using open/save dialog) closed by pett
can't reproduce: Last stack was in _update_graphics_if_needed
1:12 PM Ticket #17796 (AddH: More than 2 coplanar positions specified) closed by pett
not a bug: Bad PDB file
1:11 PM Ticket #17795 (Crash on Mac waking from sleep) closed by pett
duplicate
1:10 PM Ticket #17794 (Crash on exit) closed by pett
duplicate: From about 4 days before the fix went in.
1:07 PM Ticket #17793 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by pett
duplicate: Hi, Thanks for reporting this problem. It was fixed about two days …
12:46 PM Ticket #17820 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
12:34 PM Ticket #17819 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
12:26 PM Ticket #17757 ("move": distance is None while undo is not None) closed by Tom Goddard
fixed: Fixed in 1.11. I made the move command not support undo if frames is …
12:02 PM Ticket #17791 (Crash in chem_group on Windows) closed by pett
can't reproduce
12:01 PM Ticket #17790 (Crash on Mac waking from sleep) closed by pett
duplicate
11:14 AM Ticket #17788 (Deep recursion in find_close_points_boxes) closed by Tom Goddard
limitation: Maybe this got around the PDB reader check for NaN/Inf because the …
11:13 AM Ticket #17789 (Bad PDB file) closed by pett
nonchimerax
11:08 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:20 AM Ticket #17786 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
9:40 AM Ticket #17818 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
8:05 AM Ticket #17817 (Mutation Scores: NotImplementedError: cannot remove artist) created by Ever.ODonnell@…
[…]
5:21 AM Ticket #17816 (Load MD atom subsets) created by Tristan Croll
[…]
2:39 AM Ticket #17815 (Many setGeometry errors → crash) created by chimerax-bug-report@…
[…]
12:12 AM Ticket #17814 (Crash in Qt event loop after opening/displaying MRC file) created by chimerax-bug-report@…
[…]

May 26, 2025:

9:41 PM Ticket #17813 (Building add_charge fails with metadata error) created by Greg Couch
Building the develop branch of ChimeraX from scratch fails with: […]
12:16 PM Ticket #17812 (Crash at exit) created by chimerax-bug-report@…
[…]
11:59 AM Ticket #17811 (Crash at exit) created by chimerax-bug-report@…
[…]
11:17 AM Ticket #17810 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #17809 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:10 AM Ticket #17808 (Crash in graphics driver during Qt drawing) created by chimerax-bug-report@…
[…]
3:48 AM Ticket #17807 (Crash in python_instances_of_class saving session) created by chimerax-bug-report@…
[…]
2:43 AM Ticket #17806 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
1:34 AM Ticket #17805 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…
[…]
1:32 AM Ticket #17804 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
1:24 AM Ticket #17803 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
12:28 AM Ticket #17802 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

May 25, 2025:

7:10 PM Ticket #17801 (Crash at exit in Qt cleanup routines) created by chimerax-bug-report@…
[…]
6:59 PM Ticket #17800 (Bond rotations need to respond to bond addition/deletion) created by chimerax-bug-report@…
[…]
6:27 AM Ticket #17799 (Dead model in Find Cavities table) created by chimerax-bug-report@…
[…]
6:26 AM Ticket #17798 (Dead model in Find Cavities table) created by chimerax-bug-report@…
[…]
3:18 AM Ticket #17797 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
2:36 AM Ticket #17796 (AddH: More than 2 coplanar positions specified) created by chimerax-bug-report@…
[…]

May 24, 2025:

10:11 PM Ticket #17795 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:14 PM Ticket #17736 (question about ver.1.10 for Win) closed by Greg Couch
fixed
9:54 AM Ticket #17794 (Crash on exit) created by chimerax-bug-report@…
[…]
6:53 AM Ticket #17793 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by alessandrorevenge@…
[…]
6:19 AM Ticket #17792 (Edge case PDB file freezes ChimeraX) created by Roden Deng Luo
[…] difference_summary.txt
2:50 AM Ticket #17791 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]

May 23, 2025:

11:13 PM Ticket #17790 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
10:03 PM Ticket #17789 (Bad PDB file) created by chimerax-bug-report@…
[…]
3:50 PM Ticket #17788 (Deep recursion in find_close_points_boxes) created by chimerax-bug-report@…
[…]
3:22 PM Ticket #17787 (Installing a bundle replaces PyPi packages with different versions) created by goddard@…
[…]
2:01 PM Ticket #17786 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
1:10 PM Ticket #17735 (xr is None) closed by Tom Goddard
fixed: Fixed. Made "xr off" do nothing if the openxr camera is not the …
11:27 AM Ticket #17785 (Combine into existing ID) created by chimerax-bug-report@…
[…]
10:54 AM Ticket #17784 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:53 AM Ticket #17783 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:52 AM Ticket #17782 (Crash in chem_group on Windows) closed by pett
can't reproduce: Doesn't crash with 2gs6. Must have been the small molecule they were using.
10:22 AM Ticket #17784 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
10:21 AM Ticket #17783 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
10:19 AM Ticket #17782 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
9:43 AM Ticket #17781 (Crash using open/save dialog) closed by pett
can't reproduce: Indian English locale; activating trigger in last stack trace
9:40 AM Ticket #17780 (Crash on Mac waking from sleep) closed by pett
duplicate
9:39 AM Ticket #17779 (Crash in garbage collection) closed by pett
duplicate
9:37 AM Ticket #17777 (mshMIGPerform crash) closed by pett
can't reproduce: I wonder if this mshMIGPerform thing is going to become our bete noire …
9:18 AM Ticket #17781 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
5:43 AM Ticket #17780 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:49 AM Ticket #17779 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:27 AM Ticket #17778 (ChimeraX 1.9 SHA256 hash incorrrect) created by cb3009@…
[…]

May 22, 2025:

10:18 PM Ticket #15897 (Core include files not found) closed by Zach Pearson
fixed
7:52 PM Ticket #17777 (mshMIGPerform crash) created by chimerax-bug-report@…
[…]
6:45 PM Ticket #17776 (Boltz installation info contains non-UTF-8 character) closed by Tom Goddard
fixed: Fixed in 1.10. Used getpreferredencoding() to decode pip and boltz …
5:52 PM Ticket #17770 (Crash in ses_surface_geometry) closed by Tom Goddard
limitation: The computer only has 3 or 4 GB of memory and they tried to compute …
5:40 PM Ticket #17761 (Device loss detected in Present()) closed by Tom Goddard
can't reproduce: All the error messages come from Qt. Device loss detected in …
5:14 PM Ticket #17704 (Linux ChimeraX can't find ffmpeg) closed by Zach Pearson
fixed
4:52 PM Ticket #17087 (Postinst or prerm script issue related to GLIBC version) closed by Greg Couch
fixed: Change the Ubuntu and Red Hat packages to specify a minimum version of …
4:37 PM Ticket #17766 (Session restore: OverflowError: int too big to convert) closed by Greg Couch
can't reproduce: Need data to reproduce.
3:52 PM 2025-5-22 created by Tom Goddard
3:48 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:17 PM Ticket #17776 (Boltz installation info contains non-UTF-8 character) created by chimerax-bug-report@…
[…]
2:57 PM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) reopened by pett
The pyKVFinder maintainers are working on the problem, but they have a …
2:55 PM Ticket #17775 (No compiled Mac Intel version of pyKVFinder) closed by pett
duplicate: Hi Rachel, Thanks for reporting this problem. The issue is that part …
2:46 PM Ticket #17774 (Crash in garbage collection) closed by pett
duplicate
2:45 PM Ticket #17773 (Crash on Mac waking from sleep) closed by pett
duplicate
1:46 PM Ticket #17772 (Crash moving window between screens) closed by pett
duplicate
12:47 PM Ticket #17775 (No compiled Mac Intel version of pyKVFinder) created by rachel.whittlesey@…
[…]
12:36 PM Ticket #17771 (Crash using open/save dialog) closed by pett
can't reproduce: US locale; _update_graphics_if_needed in last stack trace
11:25 AM Ticket #17774 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:48 AM Ticket #17773 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
10:44 AM Ticket #17768 (Crash on Mac waking from sleep) closed by pett
duplicate
10:43 AM Ticket #17767 (Crash using open/save dialog) closed by pett
can't reproduce: Chinese locale; _update_drawings in last stack trace
10:33 AM Ticket #17765 (No compiled Mac Intel version of pyKVFinder) closed by pett
duplicate: Have asked pyKVFinder maintainers to provide Intel binaries and they …
10:30 AM Ticket #17764 (Crash on Mac waking from sleep) closed by pett
duplicate
10:29 AM Ticket #17763 (Crash in garbage collection) closed by pett
duplicate
10:21 AM Ticket #17762 (Crash auto-starting tool during movie recording) closed by pett
can't reproduce: Used the attached script to test moving recording during startup on …
9:26 AM Ticket #17772 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
9:17 AM Ticket #17771 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
8:58 AM Ticket #17760 (Crash in event loop) closed by pett
can't reproduce: Was after running some Boltz predictions, but not necessarily related.
8:54 AM Ticket #17770 (Crash in ses_surface_geometry) created by chimerax-bug-report@…
[…]
8:51 AM Ticket #17769 (SEQCROW: ORCA output file: could not convert string to float) created by chimerax-bug-report@…
[…]
8:30 AM Ticket #17768 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
7:29 AM Ticket #17767 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
5:15 AM Ticket #17766 (Session restore: OverflowError: int too big to convert) created by chimerax-bug-report@…
[…]
5:00 AM Ticket #17765 (No compiled Mac Intel version of pyKVFinder) created by chimerax-bug-report@…
[…]
4:32 AM Ticket #17764 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:17 AM Ticket #17763 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:44 AM Ticket #17762 (Crash auto-starting tool during movie recording) created by chimerax-bug-report@…
[…]
12:21 AM Ticket #17761 (Device loss detected in Present()) created by chimerax-bug-report@…
[…]

May 21, 2025:

8:17 PM Ticket #17760 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:19 PM Ticket #17759 (Crash moving window between screens) closed by pett
duplicate
6:17 PM Ticket #17758 (old ChimeraX cannot open new session) closed by pett
limitation
5:04 PM Ticket #17759 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
4:18 PM Ticket #17664 (Linux: Could not find ffmpeg executable) reopened by pett
I think the issue is that it's not finding 'ffmpeg', i.e. ffmpeg is …
3:18 PM Ticket #17664 (Linux: Could not find ffmpeg executable) closed by Greg Couch
worksforme: How did you install ChimeraX? ffmpeg is listed as a dependency in the …
3:06 PM Ticket #17660 (Crash opening mmCIF) closed by Greg Couch
duplicate: Probably fixed. Would need the mmCIF file to know for sure.
3:05 PM Ticket #17659 (Crash opening mmCIF) closed by Greg Couch
duplicate: Probably fixed. Would need the mmCIF file to know for sure.
2:54 PM Ticket #17646 (Problems with imports on Linux) closed by Greg Couch
can't reproduce: I was unable to reproduce this on Ubuntu 24.04 using the input.gro …
2:53 PM Ticket #17758 (old ChimeraX cannot open new session) created by chimerax-bug-report@…
[…]
1:21 PM Ticket #17757 ("move": distance is None while undo is not None) created by chimerax-bug-report@…
[…]
10:21 AM Ticket #17756 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
10:00 AM Ticket #17756 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #17723 (Crash in event loop) closed by pett
fixed: Jiacheng's reply (sent to chimerax-bugs-admin): Hi, I didn't do …
9:10 AM Ticket #17755 (Possible bug on installation) closed by pett
not a bug: Hi Tim, Thanks for reporting this problem. The issue is that you …
9:01 AM Ticket #17754 (Crash on Mac waking from sleep) closed by pett
duplicate
8:56 AM Ticket #17751 (Crash on Mac waking from sleep) closed by pett
duplicate
8:55 AM Ticket #17750 (Crash using open/save dialog) closed by pett
can't reproduce: Malaysian locale; check_for_drawing_change in last stack trace
8:26 AM Ticket #17755 (Possible bug on installation) created by tblower@…
[…] [[Image(...)]]
7:17 AM Ticket #17754 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
7:14 AM Ticket #17753 (MemoryError saving session) created by chimerax-bug-report@…
[…]
6:43 AM Ticket #17752 (Crash in event loop) created by 2457097088@…
[…]
5:43 AM Ticket #17751 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

May 20, 2025:

11:20 PM Ticket #17750 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
5:39 PM ChangeLog edited by pett
(diff)
5:39 PM ChangeLog edited by pett
(diff)
5:38 PM ChangeLog edited by pett
(diff)
5:38 PM ChangeLog edited by pett
(diff)
5:03 PM Ticket #17749 (Alphafold interfaces command ignores distance and max_pae options) closed by Tom Goddard
fixed: Fixed. The distance and max_pae parameters were not being passed to …
4:56 PM Ticket #17749 (Alphafold interfaces command ignores distance and max_pae options) created by gbelov@…
[…]
1:59 PM Ticket #17748 (Unknown crash) closed by pett
can't reproduce: Be nice if there weren't all anonymous.
1:55 PM Ticket #17747 (Unknown crash) closed by pett
can't reproduce: Yet another one.
1:53 PM Ticket #17746 (Unknown crash) closed by pett
can't reproduce: Also can't make heads or tails of this one. The NSAccessibility APIs …
1:51 PM Ticket #17745 (Crash on Mac waking from sleep) closed by pett
duplicate
1:49 PM Ticket #17744 (Unknown crash) closed by pett
can't reproduce: Having trouble identifying a culprit from the dump info and log.
1:16 PM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) closed by pett
nonchimerax: Hi Kristina, Thanks for reporting this problem. Find Cavities uses …
12:26 PM Ticket #17748 (Unknown crash) created by chimerax-bug-report@…
[…]
12:21 PM Ticket #17747 (Unknown crash) created by chimerax-bug-report@…
[…]
11:46 AM Ticket #17741 (Crash in event loop) closed by pett
can't reproduce
11:46 AM Ticket #17740 (Crash destroying OpenGL context on exit) closed by pett
duplicate: From before the fix went in
11:42 AM Ticket #17738 (UnicodeDecodeError opening PDB file) closed by pett
can't reproduce: Probably a Windows codec; would need the file to reproduce
11:37 AM Ticket #17737 (Crash restoring many alignments from session) closed by pett
can't reproduce
11:32 AM Ticket #17734 (Crash using open/save dialog) closed by pett
can't reproduce: French locale; File "C:\Program Files\ChimeraX …
11:31 AM Ticket #17733 (HBonds: acc_phi_psi() takes N positional arguments) closed by pett
can't reproduce: AFAIK, bad structure
10:25 AM Ticket #17746 (Unknown crash) created by chimerax-bug-report@…
[…]
10:23 AM Ticket #17732 (Crash using open/save dialog) closed by pett
can't reproduce: Slovenian locale; _update_graphics_if_needed in last stack trace
10:14 AM Ticket #17731 (Find Cavities crash) closed by pett
duplicate
10:12 AM Ticket #17730 (Crash using open/save dialog) closed by pett
can't reproduce: US locale; last stack trace contained block_redraw
10:10 AM Ticket #17729 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:08 AM Ticket #17728 (Crash in chem_group on Windows) closed by pett
can't reproduce
10:01 AM Ticket #17745 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #17727 (Crash using open/save dialog) closed by pett
can't reproduce: US locale; also stack trace for draw_new_frame
9:59 AM Ticket #17726 (Crash on Mac waking from sleep) closed by pett
duplicate
9:38 AM Ticket #17720 (Crash in event loop) closed by pett
can't reproduce
9:37 AM Ticket #17719 (Crash on Mac waking from sleep) closed by pett
duplicate
9:36 AM Ticket #17718 (Crash on Mac waking from sleep) closed by pett
duplicate
9:33 AM Ticket #17717 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate: Hi Jeffrey, Thanks for reporting this problem. The version of …
9:31 AM Ticket #17744 (Unknown crash) created by chimerax-bug-report@…
[…]
8:11 AM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) created by kristina_spiru@…
[…]
8:05 AM Ticket #17742 (Sequence association incomplete) created by Tristan Croll
[…] alignment_problem.zip
7:32 AM Ticket #17741 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:44 AM Ticket #17740 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…
[…]
6:37 AM Ticket #17739 (Session restore: msgpack: MemoryError: Unable to enlarge internal buffer.) created by chimerax-bug-report@…
[…]
6:32 AM Ticket #17738 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
[…]

May 19, 2025:

10:29 PM Ticket #17737 (Crash restoring many alignments from session) created by chimerax-bug-report@…
[…]
8:54 PM Ticket #17699 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: Same reporter, same crash as #17700
8:53 PM Ticket #17700 (Graphics hardware encountered an error and was reset) closed by Tom Goddard
nonchimerax: As the ChimeraX bug report panel said: "This is a known crash that we …
8:45 PM Ticket #17701 (AF3 pLDDT score not displaced correctly in ChimeraX) closed by Tom Goddard
not a bug: We discussed this multiple times on the ChimeraX mailing list in the …
8:26 PM Ticket #17710 (Crash opening AlphaFold prediction while others running) closed by Tom Goddard
can't reproduce
8:12 PM Ticket #17736 (question about ver.1.10 for Win) created by kiida@…
[…]
6:19 PM Ticket #17735 (xr is None) created by chimerax-bug-report@…
[…]
6:11 PM Ticket #17715 (Crash on Mac waking from sleep) closed by pett
duplicate
6:10 PM Ticket #17714 (Regular PDB file opened in MD Viewer) closed by pett
duplicate
4:00 PM Ticket #17711 (Crash using open dialog) closed by pett
can't reproduce
3:48 PM Ticket #17708 (Crash in event loop) closed by pett
can't reproduce
3:46 PM Ticket #17707 (Crash using open dialog) closed by pett
can't reproduce: Indian English; also was redrawing graphics
3:03 PM Ticket #17734 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
2:43 PM Ticket #17706 (Crash using open dialog) closed by pett
can't reproduce: US locale, no additional traceback (or multiple tracebacks)
2:40 PM Ticket #17705 (Crash using open dialog) closed by pett
can't reproduce
2:37 PM Ticket #17703 (UnicodeDecodeError: 'utf-8' codec can't decode byte) closed by pett
duplicate: More recent versions of ChimeraX also try utf-16 and utf-32
2:32 PM Ticket #17702 (Crash in event loop) closed by pett
can't reproduce
1:36 PM Ticket #17698 (Crash using open dialog) closed by pett
can't reproduce: Chinese locale There was a non-save-dialog traceback at the end, as usual.
1:24 PM Ticket #17697 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:12 PM Ticket #17696 (Crash on Mac waking from sleep) closed by pett
duplicate
12:14 PM Ticket #17733 (HBonds: acc_phi_psi() takes N positional arguments) created by chimerax-bug-report@…
[…]
12:09 PM Ticket #17732 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
7:18 AM Ticket #17731 (Find Cavities crash) created by chimerax-bug-report@…
[…]
7:15 AM Ticket #17730 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
6:34 AM Ticket #17729 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
6:17 AM Ticket #17728 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
6:10 AM Ticket #17727 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
5:22 AM Ticket #17726 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #17725 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
2:55 AM Ticket #17724 (Crash using open/save dialog?) created by bhargy.sharma@…
[…]
2:20 AM Ticket #17723 (Crash in event loop) created by dengjc21@…
[…]
12:41 AM Ticket #17722 (Linux: Could not find ffmpeg executable) created by r10b22039@…
[…]

May 18, 2025:

9:02 PM Ticket #17721 (DICOM: Cancer Imaging Archive timeout) created by chimerax-bug-report@…
[…]
6:25 PM Ticket #17720 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:21 AM Ticket #17719 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
9:43 AM Ticket #17718 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:57 AM Ticket #17717 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by openstomata@…
[…]

May 17, 2025:

11:11 PM Ticket #17716 (Toolshed installation of SEQCROW: subprocess.run("pip ..."): The ...) created by chimerax-bug-report@…
[…]
5:28 PM Ticket #17715 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:39 PM Ticket #17714 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…
[…]
8:39 AM Ticket #17713 (Crash in garbage collection) created by ellen_goodall@…
[…]
7:03 AM Ticket #17712 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by surendramph@…
[…]

May 16, 2025:

3:58 PM Ticket #17711 (Crash using open dialog) created by chimerax-bug-report@…
[…]
3:30 PM Ticket #17710 (Crash opening AlphaFold prediction while others running) created by chimerax-bug-report@…
[…]
1:56 PM ChangeLog edited by Elaine Meng
(diff)
12:10 PM Ticket #17709 (pip command documentation) created by Elaine Meng
The ChimeraX pip command has usage info but no manual page - I'm …
11:38 AM Ticket #17708 (Crash in event loop) created by chimerax-bug-report@…
[…]
10:43 AM Ticket #17707 (Crash using open dialog) created by chimerax-bug-report@…
[…]
9:15 AM Ticket #17706 (Crash using open dialog) created by chimerax-bug-report@…
[…]
9:15 AM Ticket #17705 (Crash using open dialog) created by chimerax-bug-report@…
[…]
8:20 AM Ticket #17704 (Linux ChimeraX can't find ffmpeg) created by Tristan Croll
[…]
7:52 AM Ticket #17703 (UnicodeDecodeError: 'utf-8' codec can't decode byte) created by chimerax-bug-report@…
[…]
6:11 AM Ticket #17702 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:26 AM Ticket #17701 (AF3 pLDDT score not displaced correctly in ChimeraX) created by Lukas.Bauer@…
[…] …
3:31 AM Ticket #17700 (Graphics hardware encountered an error and was reset) created by lp212@…
[…]
3:28 AM Ticket #17699 (Graphics hardware encountered an error and was reset) created by lp212@…
[…]
1:22 AM Ticket #17682 (Convert preferences category chooser from menu to side list) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/294dfccf73b83116bda045ed932bbe
1:14 AM Ticket #17698 (Crash using open dialog) created by chimerax-bug-report@…
[…]
1:04 AM Ticket #17697 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

May 15, 2025:

6:24 PM Ticket #17696 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:34 PM Ticket #17693 (Open sms file: query_chain is None) closed by Tom Goddard
fixed: Fixed in 1.10. This similar structure results (.sms) file refers to …
3:05 PM Ticket #17078 (Provide csv output for foldseek results table) closed by Tom Goddard
fixed: Fixed in 1.10. Added similar structures context menu entry to save …
3:00 PM Ticket #17695 (Search for text anywhere within command) created by deng.luo@…
You might even consider using/adding: if match_against in …
2:45 PM Ticket #17694 (Non-structure sequence still in match_maps) closed by pett
can't reproduce: A lot has changed since 1.9; would need a more recent (and …
2:28 PM Ticket #17692 (Cmd history lost with two instances) closed by pett
wontfix: Each instance of ChimeraX is writing out its own command history as …
1:47 PM Ticket #17691 (hbonds saveFile: Permission denied) closed by pett
fixed: Changed output permission errors into user errors
1:31 PM Ticket #17690 (Scipy symbol not found) closed by Zach Pearson
duplicate: I think this is a duplicate. We should note that the 1.9 release is …
12:59 PM Ticket #17694 (Non-structure sequence still in match_maps) created by chimerax-bug-report@…
[…]
12:41 PM Ticket #17693 (Open sms file: query_chain is None) created by Elaine Meng
[…] junk_foldseek_pdb.sms
12:31 PM Ticket #17692 (Cmd history lost with two instances) created by Roden Deng Luo
[…]
12:16 PM Ticket #17691 (hbonds saveFile: Permission denied) created by chimerax-bug-report@…
[…]
12:07 PM Ticket #17690 (Scipy symbol not found) created by chimerax-bug-report@…
[…]
11:50 AM Ticket #17689 (Unknown VR error value) closed by Tom Goddard
nonchimerax: Seems they are trying to start VR with Intel graphics which almost …
11:45 AM Ticket #17679 (Feedback & Issue with ChimeraX1.9) closed by pett
fixed: Glad 1.10 works!
11:38 AM Ticket #17688 (Crash on Mac waking from sleep) closed by pett
duplicate
11:37 AM Ticket #17687 (.gro file is missing header lines) closed by pett
not a bug
11:33 AM Ticket #17686 (Tool panel startup problems) closed by pett
duplicate: This report was submitted as requested in ticket #17679. Using the …
11:19 AM Ticket #17685 (Crash using open dialog) closed by pett
can't reproduce: Also in the log: C:\Program Files\ChimeraX …
11:18 AM Ticket #17684 (Crash on Mac waking from sleep) closed by pett
duplicate
11:16 AM Ticket #17683 (Crash on Mac waking from sleep) closed by pett
duplicate
10:09 AM Ticket #17689 (Unknown VR error value) created by chimerax-bug-report@…
[…]
9:44 AM Ticket #17681 (Reading volume data: OSError: Operation canceled) closed by Tom Goddard
nonchimerax: This is an OSError operation canceled. Which I believe means the user …
8:00 AM Ticket #17688 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:27 AM Ticket #17687 (.gro file is missing header lines) created by chimerax-bug-report@…
[…]
5:06 AM Ticket #17686 (Tool panel startup problems) created by shantanukhatri007@…
[…] Screenshot 2025-05-15 172936.png
2:51 AM Ticket #17685 (Crash using open dialog) created by chimerax-bug-report@…
[…]
12:18 AM Ticket #17684 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

May 14, 2025:

10:18 PM Ticket #17683 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:02 PM Ticket #17680 ('ScaledGrid' object has no attribute 'dicom_data') closed by pett
duplicate
5:49 PM Ticket #17682 (Convert preferences category chooser from menu to side list) created by Zach Pearson
Could we do a side category list? Would that be too much of a 90s-00s …
4:10 PM Ticket #17681 (Reading volume data: OSError: Operation canceled) created by chimerax-bug-report@…
[…]
3:45 PM Ticket #17680 ('ScaledGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
11:37 AM Ticket #17679 (Feedback & Issue with ChimeraX1.9) created by shantanukhatri007@…
[…] Screenshot 2025-05-14 235544.png
11:36 AM Ticket #17676 (Device loss detected in Present()) closed by Tom Goddard
nonchimerax
11:35 AM Ticket #17678 (Find Cavities crash) closed by pett
duplicate: Hi Elizabeth, Thanks for reporting this problem. It was fixed about …
11:29 AM Ticket #17677 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
11:25 AM Ticket #17675 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
11:22 AM Ticket #17674 (chimerax.modeller missing) closed by pett
can't reproduce: Modeller is indeed missing from the list of installed packages in the …
11:16 AM Ticket #17673 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
nonchimerax: Probably graphics driver bug, but could be machine only has 4 GB of …
11:14 AM Ticket #17668 (measure center: Array argument has non-numeric values) closed by Tom Goddard
duplicate: This bug with the measure center command is fixed in the ChimeraX …
11:10 AM Ticket #17672 (Safesave: file missing) closed by pett
duplicate: Duplicate of #16631
11:07 AM Ticket #17671 (Crash moving window between screens) closed by pett
duplicate
11:05 AM Ticket #17669 (Crash using open/save dialog) closed by Tom Goddard
duplicate: That graphics/view.py in the tracebacks suggests it was drawing the …
11:05 AM Ticket #17670 (Crash using open/save dialog) closed by pett
can't reproduce: German locale. Crash accessing a structure property during redraw.
10:59 AM Ticket #17663 (Graphics hardware encountered an error and was reset:) closed by Tom Goddard
nonchimerax: This is a known ChimeraX crash. The bug report panel now tells you …
10:39 AM Ticket #17667 (Modeller web service) closed by pett
not a bug: Hi Bhargy, The backend web-service infrastructure that the Modeller …
10:30 AM Ticket #17666 (Error setting cavity color) closed by pett
duplicate: Duplicate of #16362
9:53 AM Ticket #17678 (Find Cavities crash) created by efishman1006@…
[…]
9:43 AM Ticket #17677 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
9:13 AM Ticket #17665 (Unknown error) closed by pett
can't reproduce
8:41 AM Ticket #17676 (Device loss detected in Present()) created by chimerax-bug-report@…
[…]
8:32 AM Ticket #17675 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]
6:42 AM Ticket #17674 (chimerax.modeller missing) created by chimerax-bug-report@…
[…]
5:33 AM Ticket #17673 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #17672 (Safesave: file missing) created by chimerax-bug-report@…
[…]
12:33 AM Ticket #17671 (Crash moving window between screens) created by chimerax-bug-report@…
[…]

May 13, 2025:

11:09 PM Ticket #17670 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
11:00 PM Ticket #17669 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
10:42 PM Ticket #17668 (measure center: Array argument has non-numeric values) created by blz208813@…
[…]
9:39 PM Ticket #17667 (Modeller web service) created by bhargy.sharma@…
[…]
8:59 PM Ticket #17666 (Error setting cavity color) created by chimerax-bug-report@…
[…]
8:42 PM Ticket #17665 (Unknown error) created by chimerax-bug-report@…
[…]
6:29 PM Ticket #17664 (Linux: Could not find ffmpeg executable) created by chimerax-bug-report@…
[…]
6:14 PM Ticket #17663 (Graphics hardware encountered an error and was reset:) created by glander@…
[…]
4:14 PM Ticket #17519 (Show non-amino/nucleic chains initially) closed by pett
fixed: Daily build only. Fix: …
2:47 PM Ticket #17661 (Opening IHM model "open 8zza": No mmCIF models found) closed by Tom Goddard
fixed: In ChimeraX 1.10 or daily builds Use "open 8zza from pdbihm" or "open …
1:25 PM Ticket #17657 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by pett
duplicate
1:23 PM Ticket #17656 (Distance decimal place is negative) closed by pett
can't reproduce
12:28 PM Ticket #17662 (Segmentations: 'chimerax' misspelled) created by chimerax-bug-report@…
[…]
11:51 AM Ticket #17655 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
10:49 AM Ticket #17661 (Opening IHM model "open 8zza": No mmCIF models found) created by goddard@…
[…]
10:24 AM Ticket #17651 (Unknown OpenGL version) closed by Tom Goddard
nonchimerax: OpenGL driver problem.
10:03 AM Ticket #17654 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
10:02 AM Ticket #17660 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
9:53 AM Ticket #17653 (Crash in chem_group on Windows) closed by pett
can't reproduce: Doesn't really line up with the log, where the last command is "close".
9:42 AM Ticket #17649 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by pett
duplicate: Duplicate of #17637
9:40 AM Ticket #17648 (Crash handling event) closed by pett
can't reproduce: There were also some of the Greg shape-drawing bugs in the log, but I …
9:25 AM Ticket #17645 (traceback closing and opening a model with Boltz tool present) closed by pett
duplicate: Indeed, should work in today's builds.
9:24 AM Ticket #17644 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
9:21 AM Ticket #17643 (Crash using open/save dialog) closed by pett
can't reproduce
9:11 AM Ticket #17659 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
8:41 AM Ticket #17658 (Segmentations: volume_viewer is None) created by chimerax-bug-report@…
[…]
8:26 AM Ticket #17657 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by chimerax-bug-report@…
[…]
8:01 AM Ticket #17656 (Distance decimal place is negative) created by chimerax-bug-report@…
[…]
6:02 AM Ticket #17655 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
6:00 AM Ticket #17654 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
3:48 AM Ticket #17653 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
2:55 AM Ticket #17652 (libchutil on MacOS) created by Tristan Croll
[…]
2:10 AM Ticket #17651 (Unknown OpenGL version) created by chimerax-bug-report@…
[…]
1:11 AM Ticket #17650 (XMAS: KeyError: 'PSMID') created by chimerax-bug-report@…
[…]
12:33 AM Ticket #17649 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #17648 (Crash handling event) created by chimerax-bug-report@…
[…]

May 12, 2025:

11:48 PM Ticket #17647 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
9:51 PM Ticket #17646 (Problems with imports on Linux) created by chimerax-bug-report@…
[…]
6:06 PM Ticket #17641 (Qt/OpenGL problems when ChimeraX starts on (sleeping?) display) closed by Tom Goddard
nonchimerax: It looks like ChimeraX tried to start maybe when the display was …
6:05 PM Ticket #17645 (traceback closing and opening a model with Boltz tool present) created by Elaine Meng
[…]
4:59 PM Ticket #17644 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
4:54 PM Ticket #17643 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
3:51 PM Ticket #17642 (Prevent reporting of useless bug reports) created by Tom Goddard
In the 1.10 daily builds we reenabled reporting of Windows crashes. …
3:46 PM Dev2025-5-12 edited by Tom Goddard
(diff)
3:03 PM Dev2025-5-12 created by Tom Goddard
3:02 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:58 PM ChangeLog edited by pett
(diff)
2:53 PM Ticket #17637 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by pett
fixed: Hi Manjila, Thanks for reporting this problem. I have just committed …
2:12 PM Ticket #17639 ('BoltzPredictionGUI' object has no attribute '_save_option_defaults') closed by Tom Goddard
fixed
2:04 PM Ticket #17641 (Qt/OpenGL problems when ChimeraX starts on (sleeping?) display) created by Tony Schaefer
[…]
2:00 PM Ticket #17638 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by pett
duplicate
1:59 PM Ticket #17631 (Crash in QCursor.pos()) closed by Tom Goddard
can't reproduce: Crashed asking Qt the cursor position.
1:57 PM Ticket #17630 (glBufferData: out of memory) closed by Tom Goddard
nonchimerax: OpenGL out of memory allocating about 1.5 Mbytes at startup for …
1:39 PM Ticket #17625 (Crash in Qt event loop during AlphaFold prediction) closed by Tom Goddard
can't reproduce: This ChimeraX crash report shows the crash in the Qt window toolkit …
1:33 PM Ticket #17636 (Crash handling event) closed by pett
can't reproduce
1:30 PM Ticket #17634 (Crash in garbage collection) closed by pett
duplicate
1:27 PM Ticket #17633 (Crash moving window between screens) closed by pett
duplicate
1:19 PM Ticket #17629 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
1:18 PM Ticket #17628 (Crash using open dialog) closed by pett
can't reproduce
1:09 PM Ticket #17627 (Crash in garbage collection) closed by pett
duplicate
1:05 PM Ticket #17624 (Could not create OpenGL context) closed by pett
limitation: Remote display
1:04 PM Ticket #17623 (Crash on exit destroying OpenGL contexts) closed by pett
duplicate: From before the code was fixed
12:00 PM Ticket #17622 (Crash on Mac waking from sleep) closed by pett
duplicate
12:00 PM Ticket #17640 (Tug mouse mode: There is no registered Platform called "OpenCL") closed by Tom Goddard
fixed: Fixed. We switched to using the new PyPi OpenMM and our code was …
11:59 AM Ticket #17621 (Add Charge: boron) closed by pett
limitation: Hi Nisha, The underlying AMBER program that Add Charge uses …
11:55 AM Ticket #17640 (Tug mouse mode: There is no registered Platform called "OpenCL") created by goddard@…
[…]
11:51 AM Ticket #17639 ('BoltzPredictionGUI' object has no attribute '_save_option_defaults') created by howell@…
[…]
11:46 AM Ticket #17620 (Crash in chem_group on Windows) closed by pett
can't reproduce: With standard 1hdq and pubchem:6274 (histidine), no crash.
11:28 AM Ticket #17619 (Crash using open dialog) closed by pett
can't reproduce
11:05 AM Ticket #17638 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by manjila.bhusalp1@…
[…]
11:04 AM Ticket #17637 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by manjila.bhusalp1@…
[…]
10:48 AM Ticket #17618 (Crash in chem_group on Windows) closed by pett
can't reproduce: Probably a bad PDB file; don't know how that causes chem_group to crash
10:46 AM Ticket #17617 (Maestro: KeyError: 'i_m_residue_number') closed by pett
duplicate: Duplicate of #9215
10:44 AM Ticket #17616 (Crash on Mac waking from sleep) closed by pett
duplicate
10:42 AM Ticket #17615 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by pett
duplicate
10:36 AM Ticket #17582 (Problem saving session after adding trajectory coordinates) closed by pett
nonchimerax: Glad you worked it out. --Eric
10:23 AM Ticket #17613 (Crash in event loop) closed by pett
can't reproduce
10:22 AM Ticket #17612 (Crash in event loop) closed by pett
can't reproduce
10:21 AM Ticket #17611 (Crash in event loop) closed by pett
can't reproduce
10:20 AM Ticket #17610 (Crash using open dialog) closed by pett
can't reproduce
9:31 AM Ticket #17636 (Crash handling event) created by chimerax-bug-report@…
[…]
8:55 AM ChangeLog edited by Elaine Meng
(diff)
8:19 AM Ticket #17635 (pyproject.toml: more flexible library name search on Windows) created by Tristan Croll
[…]
8:01 AM Ticket #17634 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
7:31 AM Ticket #17633 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:25 AM Ticket #17632 (pyproject.toml: Windows libraries location) created by Tristan Croll
[…]
7:18 AM Ticket #17631 (Crash in QCursor.pos()) created by chimerax-bug-report@…
[…]
7:17 AM Ticket #17630 (glBufferData: out of memory) created by chimerax-bug-report@…
[…]
6:58 AM Ticket #17629 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
6:06 AM Ticket #17628 (Crash using open dialog) created by chimerax-bug-report@…
[…]
5:26 AM Ticket #17627 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
4:42 AM Ticket #17626 (ArtiaX: glTexImage3D: out of memory) created by pavol.harar@…
[…]
4:26 AM Ticket #17625 (Crash in Qt event loop during AlphaFold prediction) created by zryzry0801@…
[…]
3:34 AM Ticket #17624 (Could not create OpenGL context) created by chimerax-bug-report@…
[…]
12:57 AM Ticket #17623 (Crash on exit destroying OpenGL contexts) created by chimerax-bug-report@…
[…]

May 11, 2025:

11:08 PM Ticket #17622 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
11:06 AM Ticket #17621 (Add Charge: boron) created by nishaofficial19@…
[…]
10:16 AM Ticket #17620 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
10:15 AM Ticket #17619 (Crash using open dialog) created by chimerax-bug-report@…
[…]
9:42 AM Ticket #17618 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
9:04 AM Ticket #17617 (Maestro: KeyError: 'i_m_residue_number') created by chimerax-bug-report@…
[…]

May 10, 2025:

11:49 PM Ticket #17616 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:00 PM Ticket #17615 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…
[…]
11:06 AM Ticket #17614 (DSSP in ChimeraX) created by r.joosten@…
[…]
4:52 AM Ticket #17613 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:41 AM Ticket #17612 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:19 AM Ticket #17611 (Crash in event loop) created by chimerax-bug-report@…
[…]

May 9, 2025:

8:27 PM Ticket #17610 (Crash using open dialog) created by chimerax-bug-report@…
[…]
6:50 PM Ticket #17609 (Add a Stop button the the Boltz prediction tool) closed by Tom Goddard
fixed: Done. Stop button only appears when a prediction starts and …
6:47 PM Ticket #17609 (Add a Stop button the the Boltz prediction tool) created by goddard@…
[…]
6:25 PM Ticket #17608 (Make a Boltz gui single save default options button) closed by Tom Goddard
fixed: Done in 1.10. Save default options saves all the setting in the Boltz …
6:18 PM Ticket #17608 (Make a Boltz gui single save default options button) created by goddard@…
[…]
5:56 PM Ticket #17605 (Open temporary Chrome download file: UnicodeDecodeError) closed by pett
not a bug
5:42 PM Ticket #17607 (Include non-main atoms in kvfinder receptor) created by alexander.muhleip@…
I am checking out the new kvfinder tool in ChimeraX. I was wondering …
4:39 PM Ticket #15942 (Restore session: LZ4F_decompress failed with code: ...) closed by Greg Couch
fixed: Nothing we can do, so eliminated the traceback when this occurs.
4:17 PM Ticket #17606 (Install Boltz with the correct CUDA version) created by Tom Goddard
Currently the Boltz tool installs the PyPi Boltz which on Windows …
3:51 PM Ticket #17605 (Open temporary Chrome download file: UnicodeDecodeError) created by chimerax-bug-report@…
[…]
1:45 PM Ticket #17602 (color different chain using terminal and looping) closed by pett
not a bug: Hi Jinchao, The "color" commands in your script are wrong because …
1:30 PM Ticket #17604 (Don't spam the file history when opening a cluster in the similar ...) closed by Tom Goddard
fixed: Fixed. Structure is only added to the file history if just one …
1:26 PM Ticket #17604 (Don't spam the file history when opening a cluster in the similar ...) created by goddard@…
[…]
1:15 PM Ticket #17603 (Open all structures for a cluster in the similar structures tool) closed by Tom Goddard
fixed: Added to ChimeraX 1.10 and daily build. I added an entry to the …
1:09 PM Ticket #17603 (Open all structures for a cluster in the similar structures tool) created by Kliment.Verba@…
Klim Verba wants to open the similar structures for a specific …
11:43 AM Ticket #17602 (color different chain using terminal and looping) created by jg0428@…
[…]
11:37 AM Ticket #17601 (Make boltz results directory use [name] instead of [N]) closed by Tom Goddard
fixed: Done in 1.10. For compatibility with older boltz tool where users may …
11:25 AM Ticket #17601 (Make boltz results directory use [name] instead of [N]) created by meng@…
When specifying the results directory in the Boltz tool Options pane …
10:19 AM Ticket #17591 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: What we know about this ChimeraX crash was described in the bug report …
10:04 AM Ticket #17600 (Crash in chem_group on Windows) closed by pett
duplicate
10:03 AM Ticket #17599 (Crash in chem_group on Windows) closed by pett
duplicate
9:53 AM Ticket #17597 (remotecontrol: BrokenPipeError) closed by pett
can't reproduce
9:50 AM Ticket #17596 (Crash using open/save dialog) closed by pett
can't reproduce
9:46 AM Ticket #17592 (Crash using menus) closed by pett
can't reproduce
9:43 AM Ticket #17590 (Crash in event loop) closed by pett
can't reproduce
9:41 AM Ticket #17589 (Crash in chem_group on Windows) closed by pett
can't reproduce
9:38 AM Ticket #17588 ('MRCGrid' object has no attribute 'dicom_data') closed by pett
duplicate
9:36 AM Ticket #17587 (Crash moving window between screens) closed by pett
duplicate
7:48 AM Ticket #17600 (Crash in chem_group on Windows) created by aishamatadar005@…
[…]
4:30 AM Ticket #17599 (Crash in chem_group on Windows) created by aishamatadar005@…
[…]
3:30 AM Ticket #17598 (Crash in chem_group on Windows) created by aishamatadar005@…
[…] H bonds.txt
2:27 AM Ticket #17597 (remotecontrol: BrokenPipeError) created by chimerax-bug-report@…
[…]

May 8, 2025:

10:14 PM Ticket #17596 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
7:05 PM Ticket #17595 (boltz dialog uses "directory" keyword but option is "resultsDirectory") closed by Tom Goddard
fixed: Fixed in 1.10 release and daily build. Oops. I guess I renamed that …
6:55 PM Ticket #17595 (boltz dialog uses "directory" keyword but option is "resultsDirectory") created by Elaine Meng
Trying to specify a nondefault directory in the Boltz dialog options …
5:34 PM Ticket #17594 (Use a ChimeraX fork of the Boltz github repository to improve Boltz ...) created by Tom Goddard
It might be useful to have ChimeraX Boltz install use a fork of the …
5:25 PM Ticket #16868 (AtomicShapeDrawing selection sometimes inaccurate) closed by Greg Couch
fixed: Shapes added with selected atoms will start out selected
5:05 PM Ticket #16558 (Cannot 'pip install pyKVFinger') closed by Zach Pearson
fixed: Works as of some updates from the kvfinder team.
5:01 PM Ticket #17549 (Crash opening mmCIF) closed by Greg Couch
fixed: Went ahead and made changes to make this more robust.
4:42 PM Ticket #17524 (Bad version string; slow failure on dependency mismatch) closed by Zach Pearson
fixed: Thank you for investigating/reporting this. I was looking around Plato …
4:37 PM Ticket #17357 (pip install failure ("invalid requirement")) closed by Zach Pearson
fixed: I deleted pyKVFinder out of my 1.11 build user site directory and …
4:32 PM Ticket #17593 (Boltz 1.0 install fails on Mac) closed by Tom Goddard
fixed: Fixed in 1.10. Pinned Boltz install to use version 0.4.1. Also …
4:31 PM Ticket #17578 ("Webservices job finished" message issued prematurely and multiple times) closed by Zach Pearson
fixed: The wrong indentation made this run on every invocation of …
4:21 PM Ticket #17593 (Boltz 1.0 install fails on Mac) created by goddard@…
[…]
3:48 PM Ticket #17592 (Crash using menus) created by chimerax-bug-report@…
[…]
3:06 PM Ticket #17591 (Crash on Mac waking from sleep) created by chkaiser@…
[…]
2:02 PM Ticket #17580 (alphafold pae: JSONDecodeError) closed by Tom Goddard
fixed: Fixed. The user tried to open the alphafold database settings json …
1:49 PM Ticket #17590 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:39 PM Ticket #17589 (Crash in chem_group on Windows) created by chimerax-bug-report@…
[…]
12:55 PM Ticket #17588 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
12:10 PM Ticket #17579 (Save movie: No space left on device) closed by Tom Goddard
limitation: While it would be nicer to omit tracebacks and say "out of disk space" …
12:02 PM Ticket #17586 (Crash on Mac waking from sleep) closed by pett
duplicate
12:01 PM Ticket #17585 (Crash moving window between screens) closed by pett
duplicate
12:01 PM Ticket #17584 (Crash moving window between screens) closed by pett
duplicate
12:00 PM Ticket #17583 (Crash on Mac waking from sleep) closed by pett
duplicate
11:52 AM Ticket #17587 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
10:20 AM Ticket #17586 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:28 AM Ticket #17585 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
8:09 AM Ticket #17584 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
7:37 AM Ticket #17583 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:13 AM Ticket #17582 (Problem saving session after adding trajectory coordinates) created by alexandra.zahradnikova@…
[…]
3:51 AM Ticket #17581 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by chimerax-bug-report@…
[…]
2:36 AM Ticket #17580 (alphafold pae: JSONDecodeError) created by chimerax-bug-report@…
[…]

May 7, 2025:

5:36 PM Ticket #17277 (D-amino acids assigned wrong atom types) closed by pett
fixed: Fix: …
5:22 PM Ticket #17579 (Save movie: No space left on device) created by chimerax-bug-report@…
[…]
3:50 PM Ticket #17576 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
3:49 PM Ticket #17575 (Similar Structures / foldseek errors) closed by Tom Goddard
duplicate: These Foldseek errors were fixed in the daily build several months ago.
12:11 PM Ticket #17578 ("Webservices job finished" message issued prematurely and multiple times) created by pett
[…]
9:24 AM Ticket #17577 (Crash in event loop) closed by pett
can't reproduce
9:21 AM Ticket #17574 (Crash destroying OpenGL context on exit) closed by pett
duplicate: From before the fix went in
9:19 AM Ticket #17571 (Problem restoring StructureSeq from session) closed by pett
can't reproduce
2:03 AM Ticket #17577 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:30 AM Ticket #5319 (bundle_info.xml needs a doctype) closed by Greg Couch
wontfix: Moving to pyproject.toml files.
12:09 AM Ticket #17576 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

May 6, 2025:

8:50 PM Ticket #17575 (Similar Structures / foldseek errors) created by chimerax-bug-report@…
[…]
7:50 PM Ticket #17574 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…
[…]
7:31 PM Ticket #17573 (Make boltz install pytorch with cuda support on Windows with nvidia ...) created by Tom Goddard
Currently the boltz install command will install boltz which has a …
7:06 PM Ticket #17572 (Make Boltz use Nvidia GPU on Windows if available) closed by Tom Goddard
fixed: Done. I made the boltz predict command check that torch has cuda …
7:02 PM Ticket #17572 (Make Boltz use Nvidia GPU on Windows if available) created by Tom Goddard
If Boltz has torch installed with cuda support and the user has Nvidia …
5:50 PM Ticket #17571 (Problem restoring StructureSeq from session) created by chimerax-bug-report@…
[…]
1:34 PM Ticket #17527 (pyproject.toml does not check existence of source files) closed by Zach Pearson
fixed: OK, I updated bundle builder so that if it encounters a glob like …
1:20 PM Ticket #17565 (Mac ChimeraX build fails on spacenavigator) closed by Zach Pearson
fixed: You can now put 'optional = true' in [tool.chimerax.extension.foo] …
12:51 PM Ticket #17564 (Don't report known crash if no email provided) closed by Tom Goddard
fixed: Fixed in ChimeraX 1.10. If user presses Submit button on bug report …
12:46 PM Ticket #17570 (Test of crash reporter with known crash.) closed by Tom Goddard
not a bug: Seems to be working.
12:45 PM Ticket #17570 (Test of crash reporter with known crash.) created by goddard@…
[…]
12:44 PM Ticket #17569 (Testing anonymous crash reporting for not-known crash.) closed by Tom Goddard
not a bug
12:43 PM Ticket #17568 (Test of crash reporter for known crashes.) closed by Tom Goddard
not a bug
12:40 PM Ticket #17567 (Test of crash reporter for known crashes) closed by Tom Goddard
not a bug
12:39 PM Ticket #17569 (Testing anonymous crash reporting for not-known crash.) created by chimerax-bug-report@…
[…]
12:29 PM Ticket #17568 (Test of crash reporter for known crashes.) created by chimerax-bug-report@…
[…]
12:24 PM Ticket #17567 (Test of crash reporter for known crashes) created by chimerax-bug-report@…
[…]
12:22 PM Ticket #17566 (Testing crash reporter) closed by Tom Goddard
not a bug
12:21 PM Ticket #17566 (Testing crash reporter) created by chimerax-bug-report@…
[…]
11:39 AM Ticket #17563 (Crash moving window between screens) closed by Tom Goddard
duplicate: Duplicate of #17562, same reporter.
11:38 AM Ticket #17562 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel explained what we know about this crash …
11:34 AM Ticket #17565 (Mac ChimeraX build fails on spacenavigator) created by Tom Goddard
Building ChimeraX on a Mac (make build-from-scratch) now fails if …
11:02 AM Ticket #17559 (Graphics hardware encountered an error and was reset) closed by pett
duplicate
10:59 AM Ticket #17564 (Don't report known crash if no email provided) created by Tom Goddard
In ChimeraX 1.9 we had crash reporter detect known crashes and report …
10:55 AM Ticket #17558 (Crash moving window between screens) closed by pett
duplicate
10:28 AM Ticket #17556 (Crash in Bug Reporter startup: No space left on device) closed by Tom Goddard
limitation: As the messages say "No space left on device". If they don't …
10:23 AM Ticket #17563 (Crash moving window between screens) created by mrafiq@…
[…]
10:01 AM Ticket #17562 (Crash on Mac waking from sleep) created by mrafiq@…
[…]
9:58 AM Ticket #17561 (blob recognize: user provided file name instead of model ID) created by chimerax-bug-report@…
[…]
6:51 AM Ticket #17560 (QPainter::begin: Paint device returned engine == 0, type: 2) created by chimerax-bug-report@…
[…]
12:59 AM Ticket #17559 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…
[…]

May 5, 2025:

11:38 PM Ticket #17558 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
11:16 PM Ticket #15814 (ToolInstance.bundle_info is None) closed by Greg Couch
fixed: I believe Zach fixed this already.
11:14 PM Ticket #17557 (SEQCROW: 'Session' object has no attribute 'log') created by ud21003@…
[…] GDOTHH.xyz
11:03 PM Ticket #17556 (Crash in Bug Reporter startup: No space left on device) created by chimerax-bug-report@…
[…]
6:35 PM Ticket #17545 (Ribbon break at PTR) closed by pett
fixed: The PDB file was helpful and I have fixed the problem. PDB files …
6:31 PM Ticket #17555 (Optimize Boltz predictions for large structures) created by Tom Goddard
Boltz runs out of memory or takes a very long time predicting …
5:24 PM Ticket #16547 (Save X3D failure saving 2D labels) closed by Greg Couch
fixed: Fixed was easier that I expected. It will be in the next daily build.
4:55 PM Ticket #17554 (Test crash) closed by pett
not a bug: Crash via os.abort() having used open dialog once and save dialog …
4:54 PM Ticket #17553 (Test crash) closed by pett
not a bug: Crash via os.abort having used open dialog once. Still looks fine.
4:53 PM Ticket #17552 (Test crash) closed by pett
not a bug: Crashed via os.abort() with no preceding activity -- looks fine.
4:48 PM Ticket #17554 (Test crash) created by pett
[…]
4:47 PM Ticket #17553 (Test crash) created by pett
[…]
4:45 PM Ticket #17552 (Test crash) created by pett
[…]
4:30 PM Dev2025-5-5 edited by Tom Goddard
(diff)
3:31 PM Ticket #17551 (RFE: label residues with color-coded grid of column prevalences from ...) created by Elaine Meng
Idea is to label residues with color-coded grids like we already have …
2:58 PM Dev2025-5-5 edited by Tom Goddard
(diff)
2:58 PM Dev2025-5-5 edited by Tom Goddard
(diff)
2:56 PM Dev2025-5-5 edited by Tom Goddard
(diff)
2:56 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:52 PM Ticket #17550 (Improve Boltz structure prediction usability) created by Tom Goddard
I added a Boltz structure prediction tool to ChimeraX described here …
2:29 PM Ticket #16690 (Should ChimeraX structure prediction focus on Boltz-1, Chai-1, ...) closed by Tom Goddard
fixed: I made a Boltz-1 prediction tool in ChimeraX that installs Boltz on …
2:22 PM Ticket #17548 (Shader errors) closed by Tom Goddard
nonchimerax: Probably a graphics error, although the Windows Error code suggest …
2:06 PM Ticket #17547 (Segmentation cursor is None) closed by pett
duplicate: Duplicate of #17004
2:05 PM Ticket #17546 (Segmentation cursor is None) closed by pett
duplicate: Duplicate of #17004
12:55 PM Ticket #17542 (Measure center: Array argument has non-numeric values) closed by Tom Goddard
fixed: Fixed. The "measure center #21" command on a map gave this error …
11:03 AM Ticket #17549 (Crash opening mmCIF) created by khusema@…
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10:57 AM Ticket #17502 (libtheora is not installable) closed by Greg Couch
fixed: Updated package requirements for both Ubuntu and Red hat.
10:53 AM Ticket #17544 (Bad PDB file) closed by pett
not a bug
10:51 AM Ticket #17543 (Crash in event loop after "lighting soft") closed by pett
can't reproduce
10:46 AM Ticket #17541 (Crash on Mac waking from sleep) closed by pett
duplicate
9:03 AM Ticket #17548 (Shader errors) created by chimerax-bug-report@…
[…]
8:13 AM Ticket #17547 (Segmentation cursor is None) created by chimerax-bug-report@…
[…]
8:13 AM Ticket #17546 (Segmentation cursor is None) created by chimerax-bug-report@…
[…]
6:42 AM Ticket #17545 (Ribbon break at PTR) created by mukundan.ragavan@…
[…] PTR.png
6:25 AM Ticket #17544 (Bad PDB file) created by chimerax-bug-report@…
[…]

May 4, 2025:

11:57 PM Ticket #17543 (Crash in event loop after "lighting soft") created by chimerax-bug-report@…
[…]
1:36 PM Ticket #17542 (Measure center: Array argument has non-numeric values) created by zg2234@…
[…]

May 3, 2025:

2:44 AM Ticket #17541 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
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