Sequence association incomplete

[Tristan Croll]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10rc202505100155 (2025-05-10 01:55:54 UTC)
Description
I'm attaching two PDB files, one of which (USP6_trimmed.pdb) has a very large - ~310 residues - insert removed. If I open them then do "seq align #1,2" then the sequence alignment itself is fine, but everything past the break is treated as missing structure by the alignment viewer. Guess it's breaking some assumption about the maximum size of gaps?

OpenGL version: 3.3.0 NVIDIA 572.70
OpenGL renderer: NVIDIA GeForce RTX 3070 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_GB.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: HP
Model: HP ZBook Studio 15.6 inch G8 Mobile Workstation PC
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 34,007,068,672
MaxProcessMemory: 137,438,953,344
CPU: 16 11th Gen Intel(R) Core(TM) i7-11800H @ 2.30GHz
OSLanguage: en-GB

Installed Packages:
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File attachment: alignment_problem.zip

alignment_problem.zip​

[Tristan Croll]

Added by email2trac

[Eric Pettersen]

Fixed -- in the daily build only since it's a fairly complex change.

Fix: ​https://github.com/RBVI/ChimeraX/commit/a3f93313e3afde3a9465536d2043038358418d43