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#17714 closed defect (duplicate)

Regular PDB file opened in MD Viewer

Reported by:	chimerax-bug-report@…	Owned by:	Eric Pettersen
Priority:	normal	Milestone:
Component:	Third Party	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warnings | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
Registration file 'C:\\\Users\\\Amy
Oo\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\registration' has expired  
  
UCSF ChimeraX version: 1.7 (2023-12-19)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:/CB2/CB2_Homodimerization/Simulations/Analysis/lastframe.pdb

Summary of feedback from opening
D:/CB2/CB2_Homodimerization/Simulations/Analysis/lastframe.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK BIOVIA PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2025-05-17T14:53:51Z  
  
Chain information for lastframe.pdb #1  
---  
Chain | Description  
P R | No description available  
  

> select
> :199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

1113 atoms, 1089 bonds, 72 residues, 1 model selected  

> select
> :199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302/P

6197 atoms, 6253 bonds, 396 residues, 1 model selected  

> select
> /P:199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

557 atoms, 545 bonds, 36 residues, 1 model selected  

> set bgColor white

> lighting flat

> lighting soft

> show sel atoms

> select
> /O:199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

Nothing selected  

> select
> /P:199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

557 atoms, 545 bonds, 36 residues, 1 model selected  

> select
> /R:199,202,203,206,207,209,210,213,214,216,218,220,238,241,242,244,245,248,249,252,255,256,259,262,263,266,269,270,271,302

490 atoms, 477 bonds, 30 residues, 1 model selected  

> show sel atoms

> select
> /R:199,202,203,206,207,209,210,213,214,216,218,220,238,241,242,244,245,248,249,252,255,256,259,262,263,266,269,270,271

466 atoms, 454 bonds, 29 residues, 1 model selected  

> show sel surfaces

> hide sel atoms

> mlp sel

Map values for surface "lastframe.pdb_R SES surface": minimum -1252, mean
1.237e+32, maximum 5.12e+34  
To also show corresponding color key, enter the above mlp command and add key
true  

> select
> /R:199,202,203,206,207,209,210,213,214,216,218,220,238,241,242,244,245,248,249,252,255,256,259,262,263,266,269,270,271,302

490 atoms, 477 bonds, 30 residues, 1 model selected  

> show sel surfaces

> select
> /P:199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

557 atoms, 545 bonds, 36 residues, 1 model selected  

> show sel surfaces

> mlp sel

Map values for surface "lastframe.pdb_P SES surface": minimum -28.42, mean
5.558e+32, maximum 3.831e+35  
To also show corresponding color key, enter the above mlp command and add key
true  

> hide sel atoms

> hide sel surfaces

> select clear

> hide surfaces

> show cartoons

> hide atoms

> select ::name="9JU"

132 atoms, 140 bonds, 2 residues, 1 model selected  

> show sel atoms

> select clear

> select /P

5641 atoms, 5709 bonds, 360 residues, 1 model selected  

> show sel surfaces

> select /R

5639 atoms, 5708 bonds, 360 residues, 1 model selected  

> select clear

> lighting flat

> lighting soft

> select
> /P:199,202,203,206,207,209,210,213,214,216,220,221,223,224,225,234,238,241,244,245,248,249,252,255,256,259,262,263,266-272,302

557 atoms, 545 bonds, 36 residues, 1 model selected  

> select
> /R:199,202,203,206,207,209,210,213,214,216,218,220,238,241,242,244,245,248,249,252,255,256,259,262,263,266,269,270,271,302

490 atoms, 477 bonds, 30 residues, 1 model selected  

> select
> /R:199,202,203,206,207,209,210,213,214,216,218,220,238,241,242,244,245,248,249,252,255,256,259,262,263,266,269,270,271

466 atoms, 454 bonds, 29 residues, 1 model selected  

> show sel atoms

> view

> view sel

> style sel ball

Changed 466 atom styles  

> style sel ball

Changed 466 atom styles  

> select clear

> show surfaces

> preset "overall look" "publication 1 (silhouettes)"

Using preset: Overall Look / Publication 1 (Silhouettes)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t
    lighting depthCue f

  

> preset "overall look" interactive

Using preset: Overall Look / Interactive  
Preset expands to these ChimeraX commands:

    
    
    ~set bg
    graphics silhouettes f
    lighting depthCue t

  

> set bgColor white

> toolshed show

> ui tool show Contacts

> hide surfaces

> select :233-271

1259 atoms, 1267 bonds, 78 residues, 1 model selected  

> contacts sel restrict both interModel false intraMol false
> ignoreHiddenModels true dashes 5 radius 0.3 reveal true

28 contacts  

> hide sel atoms

> select clear

> hide atoms

> select ::name="9JU"

132 atoms, 140 bonds, 2 residues, 1 model selected  

> show sel atoms

> style sel ball

Changed 132 atom styles  

> select clear

> select :233-271

1259 atoms, 1267 bonds, 28 pseudobonds, 78 residues, 2 models selected  

> contacts sel restrict both interModel false intraMol false
> ignoreHiddenModels true dashes 5 radius 0.3 reveal true

28 contacts  

> ui tool show H-Bonds

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 3.0 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

0 hydrogen bonds found  
0 strict hydrogen bonds found  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 3.5 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

Atom specifier selects no atoms  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 3.5 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

Atom specifier selects no atoms  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 3.5 angleSlop 120.0 saltOnly true intraMol false intraRes false
> select true reveal true

Atom specifier selects no atoms  

> select :233-271

1259 atoms, 1267 bonds, 28 pseudobonds, 78 residues, 2 models selected  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 3.5 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

0 hydrogen bonds found  
0 strict hydrogen bonds found  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 4.0 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

Atom specifier selects no atoms  

> select :233-271

1259 atoms, 1267 bonds, 28 pseudobonds, 78 residues, 2 models selected  

> hbonds sel color #00ff00 showDist true restrict both interModel false
> distSlop 4.0 angleSlop 120.0 twoColors true saltOnly true intraMol false
> intraRes false select true reveal true

0 hydrogen bonds found  
0 strict hydrogen bonds found  

> select :233-271

1259 atoms, 1267 bonds, 28 pseudobonds, 78 residues, 2 models selected  

> toolshed show

Downloading bundle MolecularDynamicsViewer-1.6-py3-none-any.whl  
Installed MolecularDynamicsViewer (1.6)  

QWebEngineUrlScheme::registerScheme: Scheme "kmd" already registered  

> toolshed show

> ui tool show "Molecular Dynamics Viewer"

> select clear

> show surfaces

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\ui\gui.py",
line 375, in thread_safe  
func(*args, **kw)  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 57, in handle_scheme  
self.openFile()  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 239, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
~~~~~~~~~~~~~~~~~^^^  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 239, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
~~~~~~~~~~~~~~~~~^^^  
  
See log for complete Python traceback.  
  

> close session

> ui tool show "Molecular Dynamics Viewer"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 320, in interceptRequest  
self._callback(info)  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 93, in _intercept  
return interceptor(request_info, *args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX\bin\Lib\site-
packages\chimerax\ui\htmltool.py", line 112, in _navigate  
self.session.ui.thread_safe(self.handle_scheme, url)  
File "C:\Program Files\ChimeraX\bin\Lib\site-packages\chimerax\ui\gui.py",
line 375, in thread_safe  
func(*args, **kw)  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 57, in handle_scheme  
self.openFile()  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 239, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
~~~~~~~~~~~~~~~~~^^^  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File "C:\Users\Amy Oo\AppData\Local\UCSF\ChimeraX\1.7\Python311\site-
packages\com\kdiller\dynamics\viewer\gui.py", line 239, in openFile  
self.atomStruct.atoms.coords = self.atomLocation[0]  
~~~~~~~~~~~~~~~~~^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 Core Profile Context 22.20.20.06.231106
OpenGL renderer: AMD Radeon RX 640
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.2
Locale: en_CA.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: OptiPlex 7000
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 16,853,479,424
MaxProcessMemory: 137,438,953,344
CPU: 20 12th Gen Intel(R) Core(TM) i7-12700
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.11.17
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-Cytoscape: 0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.13
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBImages: 1.2
    ChimeraX-PDBLibrary: 1.0.3
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    comtypes: 1.1.14
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.0
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    llvmlite: 0.42.0
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    MolecularDynamicsViewer: 1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numba: 0.59.1
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    pandas: 2.2.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    plotly: 5.20.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pywin32: 305
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tenacity: 8.2.3
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.12
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 6 months ago

Component:	Unassigned → Third Party
Owner:	set to Eric Pettersen
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → Regular PDB file opened in MD Viewer

comment:2 by Eric Pettersen, 6 months ago

Resolution:	→ duplicate
Status:	accepted → closed

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